Wall clock time and date at job start Tue Mar 31 2020 05:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33392 * 125.20491 * 2 1 4 4 C 1.38422 * 114.92373 * 179.97438 * 3 2 1 5 5 C 1.33384 * 114.91877 * 0.02562 * 4 3 2 6 6 C 1.50709 * 125.20087 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47323 * 89.99779 * 6 5 4 8 8 C 1.46903 * 110.99983 * 66.04143 * 7 6 5 9 9 C 1.50699 * 109.46946 * 62.84010 * 8 7 6 10 10 H 1.08005 * 119.99676 * 4.65018 * 9 8 7 11 11 C 1.37875 * 120.00351 * 184.64163 * 9 8 7 12 12 N 1.31513 * 120.00380 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99474 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47523 * 90.00084 * 13 11 9 15 15 H 1.48512 * 109.46882 * 209.99812 * 13 11 9 16 16 H 1.48496 * 109.47324 * 329.99455 * 13 11 9 17 17 C 1.46895 * 111.00192 * 190.00356 * 7 6 5 18 18 C 1.52994 * 109.47500 * 163.94914 * 17 7 6 19 19 C 1.53004 * 109.47205 * 178.05010 * 18 17 7 20 20 C 1.52994 * 109.46954 * 65.00045 * 19 18 17 21 21 C 1.52998 * 109.46727 * 184.99692 * 19 18 17 22 22 S 1.75879 * 109.59518 * 359.75203 * 5 4 3 23 23 H 1.08999 * 109.46724 * 89.99951 * 1 2 3 24 24 H 1.08999 * 109.47423 * 330.00084 * 1 2 3 25 25 H 1.08997 * 109.47021 * 209.99914 * 1 2 3 26 26 H 1.08002 * 122.53700 * 359.95430 * 3 2 1 27 27 H 1.07997 * 122.53988 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46709 * 209.99880 * 6 5 4 29 29 H 1.08992 * 109.47015 * 329.99487 * 6 5 4 30 30 H 1.09001 * 109.46928 * 182.83670 * 8 7 6 31 31 H 1.08998 * 109.47524 * 302.83617 * 8 7 6 32 32 H 0.96999 * 119.99836 * 180.02562 * 12 11 9 33 33 H 1.09007 * 109.46508 * 283.94374 * 17 7 6 34 34 H 1.09000 * 109.47436 * 43.94220 * 17 7 6 35 35 H 1.08999 * 109.47272 * 298.05202 * 18 17 7 36 36 H 1.09007 * 109.47584 * 58.04876 * 18 17 7 37 37 H 1.08997 * 109.46993 * 304.99665 * 19 18 17 38 38 H 1.08997 * 109.47581 * 59.99980 * 20 19 18 39 39 H 1.08998 * 109.47456 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.46950 * 300.00026 * 20 19 18 41 41 H 1.09000 * 109.47574 * 60.00491 * 21 19 18 42 42 H 1.09008 * 109.46998 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.47800 * 299.99766 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8446 -1.1491 1.3854 8 6 5.0771 -2.1997 2.0673 9 6 5.3072 -3.5189 1.3760 10 1 6.0157 -3.5863 0.5636 11 6 4.6136 -4.6396 1.7806 12 7 4.8140 -5.7907 1.1769 13 14 3.3879 -4.5226 3.1854 14 1 2.0452 -4.1913 2.6447 15 1 3.3269 -5.8238 3.8987 16 1 3.8172 -3.4601 4.1298 17 6 7.2848 -1.4349 1.4315 18 6 7.8034 -1.2138 2.8538 19 6 9.2930 -1.5582 2.9128 20 6 10.0780 -0.5781 2.0389 21 6 9.7827 -1.4573 4.3588 22 16 2.5210 -1.4371 0.0068 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6350 0.0002 28 1 5.4136 -1.9379 -0.5134 29 1 6.0388 -0.2714 -0.5134 30 1 5.4026 -2.2718 3.1051 31 1 4.0159 -1.9532 2.0357 32 1 4.3256 -6.5790 1.4614 33 1 7.4592 -2.4701 1.1380 34 1 7.8094 -0.7695 0.7459 35 1 7.6603 -0.1704 3.1347 36 1 7.2547 -1.8544 3.5444 37 1 9.4458 -2.5737 2.5475 38 1 9.9251 0.4374 2.4042 39 1 11.1392 -0.8231 2.0812 40 1 9.7290 -0.6500 1.0088 41 1 9.2235 -2.1556 4.9815 42 1 10.8441 -1.7022 4.4008 43 1 9.6299 -0.4418 4.7242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:45 Heat of formation + Delta-G solvation = -2.846986 kcal Electronic energy + Delta-G solvation = -20338.965696 eV Core-core repulsion = 17509.353813 eV Total energy + Delta-G solvation = -2829.611882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58272 -38.44910 -36.76274 -34.55623 -33.09229 -30.49711 -30.05727 -27.95665 -27.55433 -25.19072 -24.56508 -23.42463 -21.50700 -20.75275 -19.44912 -19.04129 -17.66452 -16.83453 -16.61028 -16.10658 -15.88183 -15.67412 -14.80293 -14.75261 -14.54164 -14.35407 -14.25371 -13.82423 -13.55928 -13.43129 -13.27645 -12.99582 -12.85165 -12.76224 -12.58716 -12.52583 -12.35646 -12.06843 -12.04528 -11.84682 -11.71802 -11.43796 -11.38660 -11.33023 -11.19728 -10.77212 -9.34727 -9.27811 -8.93292 -8.31568 -6.32734 0.18739 0.82441 1.28899 1.30598 1.31338 1.40298 1.94976 2.30904 3.05327 3.35021 3.99440 4.05405 4.07727 4.11072 4.18463 4.46418 4.48111 4.50714 4.60448 4.69814 4.75972 4.81626 4.83599 4.84620 4.92404 4.94412 5.01627 5.06375 5.09432 5.13124 5.15490 5.24770 5.27037 5.37114 5.40765 5.47100 5.51487 5.56250 5.62412 5.80132 6.08914 6.33485 6.41825 6.71402 7.32893 8.84598 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.006495 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.323287 B = 4310.273470 C = 5789.625655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.195 4.195 3 C -0.142 4.142 4 C -0.125 4.125 5 C -0.166 4.166 6 C 0.129 3.871 7 N -0.524 5.524 8 C 0.159 3.841 9 C -0.530 4.530 10 H 0.038 0.962 11 C 0.026 3.974 12 N -0.943 5.943 13 Si 0.918 3.082 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.252 1.252 17 C 0.061 3.939 18 C -0.095 4.095 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.141 4.141 22 S 0.042 5.958 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.166 0.834 27 H 0.158 0.842 28 H 0.022 0.978 29 H 0.101 0.899 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.015 0.985 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 15.538 0.460 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.312 4.312 3 C -0.172 4.172 4 C -0.156 4.156 5 C -0.283 4.283 6 C 0.000 4.000 7 N -0.246 5.246 8 C 0.031 3.969 9 C -0.569 4.569 10 H 0.056 0.944 11 C -0.173 4.173 12 N -0.584 5.584 13 Si 0.743 3.257 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.176 1.176 17 C -0.067 4.067 18 C -0.133 4.133 19 C -0.116 4.116 20 C -0.197 4.197 21 C -0.198 4.198 22 S 0.305 5.695 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.184 0.816 27 H 0.175 0.825 28 H 0.040 0.960 29 H 0.119 0.881 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.621 14.257 0.717 14.288 hybrid contribution -0.088 -0.438 -0.002 0.447 sum -0.710 13.818 0.715 13.855 Atomic orbital electron populations 1.20392 0.86114 1.03644 1.03519 1.24994 1.01173 0.95226 1.09829 1.20304 0.92371 0.99930 1.04605 1.20297 0.97043 0.95224 1.02991 1.24301 0.97511 0.96453 1.10082 1.20409 0.90188 0.98656 0.90772 1.62535 1.04014 1.44149 1.13916 1.20077 0.94446 0.88044 0.94311 1.21702 1.23278 0.94240 1.17695 0.94426 1.25603 0.98288 0.94886 0.98495 1.70045 1.43949 1.00842 1.43541 0.86120 0.80737 0.78015 0.80859 1.18825 1.20898 1.17575 1.22081 0.87624 0.98687 0.98295 1.21467 0.94981 1.01311 0.95563 1.21079 0.94210 0.99303 0.97006 1.21814 0.99651 0.99062 0.99159 1.21783 1.01057 1.01986 0.94960 1.85300 0.99057 1.11457 1.73642 0.89643 0.88494 0.92124 0.81629 0.82480 0.95961 0.88136 0.96086 0.95205 0.92719 0.96615 0.90192 0.90982 0.94408 0.93246 0.91753 0.91930 0.93073 0.93847 0.91627 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.38 71.24 0.74 -0.95 16 2 C -0.19 -5.74 6.51 24.59 0.16 -5.58 16 3 C -0.14 -3.80 10.05 21.22 0.21 -3.58 16 4 C -0.12 -3.73 10.05 21.21 0.21 -3.52 16 5 C -0.17 -6.11 5.26 24.59 0.13 -5.98 16 6 C 0.13 5.02 5.27 85.56 0.45 5.48 16 7 N -0.52 -21.52 4.66 -905.38 -4.22 -25.74 16 8 C 0.16 7.72 3.82 85.56 0.33 8.04 16 9 C -0.53 -29.93 7.89 25.60 0.20 -29.73 16 10 H 0.04 2.36 6.20 -2.91 -0.02 2.34 16 11 C 0.03 1.50 5.47 84.65 0.46 1.96 16 12 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 13 Si 0.92 45.17 27.38 68.60 1.88 47.05 16 14 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 16 H -0.25 -11.80 6.68 99.48 0.66 -11.14 16 17 C 0.06 2.29 4.51 86.30 0.39 2.68 16 18 C -0.10 -3.17 4.76 30.59 0.15 -3.02 16 19 C -0.10 -2.69 2.92 -10.80 -0.03 -2.73 16 20 C -0.14 -3.15 8.95 71.98 0.64 -2.51 16 21 C -0.14 -3.33 9.19 71.98 0.66 -2.66 16 22 S 0.04 1.62 21.79 -56.49 -1.23 0.39 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.02 1.03 6.58 -2.39 -0.02 1.01 16 29 H 0.10 3.26 7.86 -2.39 -0.02 3.24 16 30 H 0.02 1.06 6.01 -2.39 -0.01 1.04 16 31 H 0.03 1.48 5.05 -2.39 -0.01 1.47 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.02 0.71 6.16 -2.38 -0.01 0.69 16 34 H 0.08 2.56 6.32 -2.39 -0.02 2.55 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.45 6.68 -2.38 -0.02 1.43 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.20 6.61 -2.39 -0.02 1.18 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -66.19 347.01 2.36 -63.82 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.93 Total: 15.32 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 4.71 Total: -42.10 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.92 Total: -84.48 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.23 Total: 0.39 kcal Total: -66.19 2.36 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.976 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds