Wall clock time and date at job start Tue Mar 31 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38429 * 122.53672 * 2 1 4 4 C 1.33382 * 114.92280 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59389 * 359.97438 * 4 3 2 6 6 C 1.33382 * 122.54238 * 179.97438 * 2 1 3 7 7 C 1.50694 * 125.20514 * 0.06140 * 6 2 1 8 8 N 1.46903 * 109.47534 * 83.70475 * 7 6 2 9 9 C 1.46900 * 110.99652 * 75.91903 * 8 7 6 10 10 C 1.50703 * 109.46848 * 282.84548 * 9 8 7 11 11 H 1.07997 * 120.00364 * 354.89402 * 10 9 8 12 12 C 1.37878 * 119.99741 * 174.90256 * 10 9 8 13 13 N 1.31522 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47097 * 59.99587 * 14 12 10 16 16 H 1.48498 * 109.47177 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46517 * 299.99417 * 14 12 10 18 18 C 1.46901 * 110.99950 * 199.87030 * 8 7 6 19 19 C 1.52994 * 109.46884 * 75.36902 * 18 8 7 20 20 C 1.53004 * 109.47242 * 184.85102 * 19 18 8 21 21 C 1.52993 * 109.47442 * 174.99999 * 20 19 18 22 22 C 1.53004 * 109.46656 * 295.00004 * 20 19 18 23 23 H 1.09007 * 109.46976 * 273.29687 * 1 2 3 24 24 H 1.08998 * 109.47678 * 33.29900 * 1 2 3 25 25 H 1.09003 * 109.47158 * 153.29978 * 1 2 3 26 26 H 1.08006 * 122.53739 * 359.95800 * 3 2 1 27 27 H 1.08001 * 125.20814 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.47334 * 203.70886 * 7 6 2 29 29 H 1.09003 * 109.46880 * 323.70393 * 7 6 2 30 30 H 1.08997 * 109.47264 * 42.84298 * 9 8 7 31 31 H 1.09002 * 109.46866 * 162.84742 * 9 8 7 32 32 H 0.96995 * 120.00208 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.46721 * 195.36588 * 18 8 7 34 34 H 1.08995 * 109.47157 * 315.36590 * 18 8 7 35 35 H 1.09007 * 109.47402 * 304.84802 * 19 18 8 36 36 H 1.09004 * 109.47659 * 64.84875 * 19 18 8 37 37 H 1.09002 * 109.47136 * 54.99471 * 20 19 18 38 38 H 1.09002 * 109.47386 * 59.99626 * 21 20 19 39 39 H 1.09000 * 109.47197 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46858 * 299.99822 * 21 20 19 41 41 H 1.09000 * 109.46821 * 179.97438 * 22 20 19 42 42 H 1.09002 * 109.46913 * 299.99603 * 22 20 19 43 43 H 1.08996 * 109.47521 * 59.99457 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9903 0.0005 5 16 3.9387 -0.7302 0.0018 6 6 2.2245 -1.1244 0.0005 7 6 1.6538 -2.5191 -0.0002 8 7 1.3290 -2.9147 -1.3772 9 6 2.5445 -3.2614 -2.1258 10 6 3.2598 -1.9994 -2.5345 11 1 2.8116 -1.0368 -2.3377 12 6 4.4864 -2.0739 -3.1597 13 7 5.0324 -3.2462 -3.3990 14 14 5.3734 -0.5097 -3.6656 15 1 5.6333 0.3228 -2.4637 16 1 6.6631 -0.8594 -4.3133 17 1 4.5291 0.2509 -4.6216 18 6 0.3665 -4.0244 -1.3930 19 6 -1.0271 -3.4956 -1.0482 20 6 -2.0062 -4.6669 -0.9459 21 6 -3.3697 -4.1527 -0.4799 22 6 -2.1526 -5.3303 -2.3168 23 1 -0.3633 0.0591 1.0260 24 1 -0.3634 0.8589 -0.5642 25 1 -0.3634 -0.9181 -0.4618 26 1 1.7963 2.1465 -0.0007 27 1 4.3077 1.7824 0.0010 28 1 2.3867 -3.2118 0.4136 29 1 0.7491 -2.5418 0.6073 30 1 3.2000 -3.8628 -1.4960 31 1 2.2734 -3.8298 -3.0155 32 1 5.8955 -3.2986 -3.8385 33 1 0.3488 -4.4758 -2.3850 34 1 0.6631 -4.7730 -0.6584 35 1 -0.9902 -2.9685 -0.0948 36 1 -1.3595 -2.8113 -1.8289 37 1 -1.6278 -5.3950 -0.2284 38 1 -3.7480 -3.4245 -1.1973 39 1 -4.0673 -4.9871 -0.4074 40 1 -3.2653 -3.6800 0.4967 41 1 -2.8498 -6.1650 -2.2438 42 1 -2.5310 -4.6021 -3.0342 43 1 -1.1813 -5.6966 -2.6489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:15 Heat of formation + Delta-G solvation = 17.386333 kcal Electronic energy + Delta-G solvation = -20828.979745 eV Core-core repulsion = 18000.245246 eV Total energy + Delta-G solvation = -2828.734500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.24993 -37.00599 -35.33045 -32.50752 -30.62494 -29.29136 -28.01310 -27.09358 -26.10493 -24.17216 -22.37831 -21.82850 -20.26706 -19.70895 -17.50697 -16.53659 -16.28590 -15.31282 -14.88131 -14.44886 -14.35979 -13.93088 -13.81327 -13.28521 -13.15309 -12.74769 -12.50908 -12.33239 -12.08217 -11.90420 -11.77753 -11.45868 -11.42131 -11.11807 -11.06814 -10.98773 -10.96040 -10.66415 -10.48541 -10.46054 -10.30326 -10.12490 -9.78658 -9.56032 -9.18960 -8.37400 -7.65603 -7.29942 -7.24179 -5.95864 -3.88900 1.85960 2.59957 2.97342 3.37746 3.41291 3.45800 3.47456 4.49007 4.81849 5.03348 5.09266 5.28604 5.41089 5.58566 5.60730 5.62154 5.68790 5.78106 5.84507 5.87752 5.93364 5.99142 6.03314 6.07079 6.09642 6.13713 6.20797 6.25113 6.30033 6.32900 6.38172 6.53237 6.61988 6.70047 6.86290 7.17750 7.25868 7.31312 7.37846 7.91210 8.11343 8.19064 8.57728 9.13849 9.69283 11.14718 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.006525 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.968667 B = 4290.126715 C = 5487.865482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.120 4.120 3 C -0.138 4.138 4 C -0.252 4.252 5 S 0.166 5.834 6 C -0.134 4.134 7 C 0.136 3.864 8 N -0.530 5.530 9 C 0.190 3.810 10 C -0.486 4.486 11 H 0.068 0.932 12 C 0.064 3.936 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.278 1.278 18 C 0.056 3.944 19 C -0.109 4.109 20 C -0.097 4.097 21 C -0.145 4.145 22 C -0.148 4.148 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.032 0.968 29 H 0.072 0.928 30 H -0.004 1.004 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 1.185 7.831 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.171 4.171 4 C -0.389 4.389 5 S 0.436 5.564 6 C -0.253 4.253 7 C 0.006 3.994 8 N -0.255 5.255 9 C 0.066 3.934 10 C -0.526 4.526 11 H 0.087 0.913 12 C -0.137 4.137 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.204 1.204 18 C -0.073 4.073 19 C -0.147 4.147 20 C -0.116 4.116 21 C -0.202 4.202 22 C -0.205 4.205 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.165 0.835 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.013 0.987 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.354 0.640 7.528 12.024 hybrid contribution -0.121 1.068 -0.235 1.100 sum -9.476 1.708 7.293 12.079 Atomic orbital electron populations 1.20425 0.90944 1.02765 1.00388 1.18502 0.96614 0.91522 1.06678 1.19739 0.92837 0.98427 1.06093 1.25548 0.99577 1.00752 1.12998 1.84465 1.06151 0.97779 1.68009 1.23978 0.95563 0.98271 1.07445 1.20342 0.97547 0.90248 0.91219 1.62081 1.15678 1.36261 1.11444 1.19862 0.84591 0.96573 0.92416 1.21259 1.02096 0.93162 1.36108 0.91345 1.24812 0.97333 0.95497 0.96035 1.69940 1.17797 1.23159 1.43291 0.86853 0.78923 0.84409 0.79287 1.19347 1.21607 1.20368 1.22132 0.92189 0.92400 1.00572 1.21690 0.94180 0.97014 1.01788 1.21121 0.95461 0.97702 0.97324 1.21822 0.96692 1.00704 1.00989 1.21875 1.01700 1.00064 0.96863 0.93027 0.92701 0.90763 0.86037 0.83526 0.94978 0.90989 0.98666 0.95772 0.93082 0.91099 0.96106 0.92253 0.91363 0.91712 0.92750 0.93220 0.92925 0.93417 0.92695 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 9.71 36.00 0.35 -0.97 16 2 C -0.12 -2.22 5.80 -106.25 -0.62 -2.83 16 3 C -0.14 -2.47 9.98 -41.21 -0.41 -2.88 16 4 C -0.25 -4.69 11.23 29.04 0.33 -4.37 16 5 S 0.17 3.45 20.54 -107.50 -2.21 1.24 16 6 C -0.13 -2.66 4.07 -36.01 -0.15 -2.81 16 7 C 0.14 2.60 4.50 -4.98 -0.02 2.57 16 8 N -0.53 -10.94 4.36 -237.52 -1.04 -11.97 16 9 C 0.19 4.80 4.77 -4.97 -0.02 4.78 16 10 C -0.49 -13.13 6.11 -34.44 -0.21 -13.34 16 11 H 0.07 1.90 6.05 -52.49 -0.32 1.58 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 14 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 18 C 0.06 0.95 4.60 -3.83 -0.02 0.93 16 19 C -0.11 -1.51 4.31 -26.73 -0.12 -1.63 16 20 C -0.10 -1.13 2.92 -90.62 -0.26 -1.39 16 21 C -0.14 -1.45 9.19 37.15 0.34 -1.11 16 22 C -0.15 -1.69 8.95 37.16 0.33 -1.36 16 23 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.17 5.95 -51.93 -0.31 0.86 16 26 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 27 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.03 0.64 7.71 -51.93 -0.40 0.24 16 29 H 0.07 1.19 5.85 -51.93 -0.30 0.89 16 30 H 0.00 -0.12 7.70 -51.93 -0.40 -0.52 16 31 H 0.02 0.65 7.57 -51.93 -0.39 0.26 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.07 1.26 6.26 -51.93 -0.32 0.93 16 34 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 35 H 0.06 0.81 5.95 -51.92 -0.31 0.50 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.73 6.67 -51.93 -0.35 0.38 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -28.82 346.09 -10.19 -39.01 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.31 Total: -1.92 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -0.58 Total: -22.71 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.30 Total: -37.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.21 Total: 1.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.82 -10.19 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.401 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds