Wall clock time and date at job start Tue Mar 31 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38429 * 122.53672 * 2 1 4 4 C 1.33382 * 114.92280 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59389 * 359.97438 * 4 3 2 6 6 C 1.33382 * 122.54238 * 179.97438 * 2 1 3 7 7 C 1.50694 * 125.20514 * 0.06140 * 6 2 1 8 8 N 1.46903 * 109.47534 * 83.70475 * 7 6 2 9 9 C 1.46900 * 110.99652 * 75.91903 * 8 7 6 10 10 C 1.50703 * 109.46848 * 282.84548 * 9 8 7 11 11 H 1.07997 * 120.00364 * 354.89402 * 10 9 8 12 12 C 1.37878 * 119.99741 * 174.90256 * 10 9 8 13 13 N 1.31522 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47097 * 59.99587 * 14 12 10 16 16 H 1.48498 * 109.47177 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46517 * 299.99417 * 14 12 10 18 18 C 1.46901 * 110.99950 * 199.87030 * 8 7 6 19 19 C 1.52994 * 109.46884 * 75.36902 * 18 8 7 20 20 C 1.53004 * 109.47242 * 184.85102 * 19 18 8 21 21 C 1.52993 * 109.47442 * 174.99999 * 20 19 18 22 22 C 1.53004 * 109.46656 * 295.00004 * 20 19 18 23 23 H 1.09007 * 109.46976 * 273.29687 * 1 2 3 24 24 H 1.08998 * 109.47678 * 33.29900 * 1 2 3 25 25 H 1.09003 * 109.47158 * 153.29978 * 1 2 3 26 26 H 1.08006 * 122.53739 * 359.95800 * 3 2 1 27 27 H 1.08001 * 125.20814 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.47334 * 203.70886 * 7 6 2 29 29 H 1.09003 * 109.46880 * 323.70393 * 7 6 2 30 30 H 1.08997 * 109.47264 * 42.84298 * 9 8 7 31 31 H 1.09002 * 109.46866 * 162.84742 * 9 8 7 32 32 H 0.96995 * 120.00208 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.46721 * 195.36588 * 18 8 7 34 34 H 1.08995 * 109.47157 * 315.36590 * 18 8 7 35 35 H 1.09007 * 109.47402 * 304.84802 * 19 18 8 36 36 H 1.09004 * 109.47659 * 64.84875 * 19 18 8 37 37 H 1.09002 * 109.47136 * 54.99471 * 20 19 18 38 38 H 1.09002 * 109.47386 * 59.99626 * 21 20 19 39 39 H 1.09000 * 109.47197 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46858 * 299.99822 * 21 20 19 41 41 H 1.09000 * 109.46821 * 179.97438 * 22 20 19 42 42 H 1.09002 * 109.46913 * 299.99603 * 22 20 19 43 43 H 1.08996 * 109.47521 * 59.99457 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9903 0.0005 5 16 3.9387 -0.7302 0.0018 6 6 2.2245 -1.1244 0.0005 7 6 1.6538 -2.5191 -0.0002 8 7 1.3290 -2.9147 -1.3772 9 6 2.5445 -3.2614 -2.1258 10 6 3.2598 -1.9994 -2.5345 11 1 2.8116 -1.0368 -2.3377 12 6 4.4864 -2.0739 -3.1597 13 7 5.0324 -3.2462 -3.3990 14 14 5.3734 -0.5097 -3.6656 15 1 5.6333 0.3228 -2.4637 16 1 6.6631 -0.8594 -4.3133 17 1 4.5291 0.2509 -4.6216 18 6 0.3665 -4.0244 -1.3930 19 6 -1.0271 -3.4956 -1.0482 20 6 -2.0062 -4.6669 -0.9459 21 6 -3.3697 -4.1527 -0.4799 22 6 -2.1526 -5.3303 -2.3168 23 1 -0.3633 0.0591 1.0260 24 1 -0.3634 0.8589 -0.5642 25 1 -0.3634 -0.9181 -0.4618 26 1 1.7963 2.1465 -0.0007 27 1 4.3077 1.7824 0.0010 28 1 2.3867 -3.2118 0.4136 29 1 0.7491 -2.5418 0.6073 30 1 3.2000 -3.8628 -1.4960 31 1 2.2734 -3.8298 -3.0155 32 1 5.8955 -3.2986 -3.8385 33 1 0.3488 -4.4758 -2.3850 34 1 0.6631 -4.7730 -0.6584 35 1 -0.9902 -2.9685 -0.0948 36 1 -1.3595 -2.8113 -1.8289 37 1 -1.6278 -5.3950 -0.2284 38 1 -3.7480 -3.4245 -1.1973 39 1 -4.0673 -4.9871 -0.4074 40 1 -3.2653 -3.6800 0.4967 41 1 -2.8498 -6.1650 -2.2438 42 1 -2.5310 -4.6021 -3.0342 43 1 -1.1813 -5.6966 -2.6489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:15 Heat of formation + Delta-G solvation = 2.464366 kcal Electronic energy + Delta-G solvation = -20829.626810 eV Core-core repulsion = 18000.245246 eV Total energy + Delta-G solvation = -2829.381565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73370 -38.32665 -36.65788 -34.56098 -32.03789 -30.68577 -29.63363 -27.98722 -27.72835 -25.67625 -24.07766 -23.25471 -21.85768 -20.74028 -18.98607 -18.38869 -18.01531 -16.81703 -16.27304 -16.25127 -15.71301 -15.26468 -15.15891 -14.60994 -14.45424 -14.18274 -14.08572 -13.64076 -13.54110 -13.14905 -13.05639 -13.01306 -12.83653 -12.70983 -12.52393 -12.40819 -12.33779 -12.20301 -12.09331 -11.82736 -11.51790 -11.39438 -11.31424 -11.18470 -11.01768 -10.51151 -9.17621 -9.01008 -8.84071 -8.10616 -6.08084 0.37908 1.09416 1.38209 1.39671 1.46419 1.51404 2.05009 2.44819 3.24892 3.36362 4.01540 4.07532 4.12914 4.21008 4.25962 4.33833 4.50297 4.53948 4.65799 4.75246 4.78489 4.83038 4.86697 4.90770 4.93384 5.02583 5.06356 5.10405 5.18401 5.20929 5.24332 5.29545 5.32795 5.41729 5.45797 5.55298 5.62378 5.78467 5.83729 5.96990 6.16570 6.35799 6.67154 6.98616 7.53477 9.00235 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.006525 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.968667 B = 4290.126715 C = 5487.865482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.245 4.245 5 S 0.085 5.915 6 C -0.151 4.151 7 C 0.140 3.860 8 N -0.532 5.532 9 C 0.206 3.794 10 C -0.476 4.476 11 H 0.064 0.936 12 C 0.020 3.980 13 N -0.938 5.938 14 Si 0.924 3.076 15 H -0.254 1.254 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.055 3.945 19 C -0.096 4.096 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.156 0.844 27 H 0.169 0.831 28 H 0.015 0.985 29 H 0.103 0.897 30 H -0.036 1.036 31 H -0.002 1.002 32 H 0.258 0.742 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.074 3.097 8.798 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C -0.169 4.169 4 C -0.381 4.381 5 S 0.353 5.647 6 C -0.269 4.269 7 C 0.011 3.989 8 N -0.256 5.256 9 C 0.080 3.920 10 C -0.516 4.516 11 H 0.082 0.918 12 C -0.177 4.177 13 N -0.581 5.581 14 Si 0.750 3.250 15 H -0.178 1.178 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.198 4.198 22 C -0.205 4.205 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.033 0.967 29 H 0.121 0.879 30 H -0.019 1.019 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.742 2.561 8.505 14.724 hybrid contribution 0.527 0.499 -0.476 0.868 sum -11.215 3.060 8.030 14.129 Atomic orbital electron populations 1.20496 0.88399 1.03127 1.02306 1.19006 0.98468 0.91084 1.04442 1.20159 0.92518 0.99724 1.04537 1.25772 1.00599 0.99105 1.12611 1.84713 1.08667 1.00990 1.70288 1.24063 0.94513 0.99036 1.09291 1.20365 0.98377 0.89779 0.90368 1.62046 1.13820 1.37425 1.12276 1.19507 0.85922 0.95185 0.91373 1.21333 1.01981 0.93224 1.35035 0.91819 1.25437 0.98169 0.97749 0.96357 1.70054 1.18197 1.25046 1.44767 0.86091 0.77860 0.81681 0.79333 1.17807 1.21626 1.20237 1.22233 0.93272 0.91705 1.00120 1.21583 0.92234 0.97779 1.01766 1.21098 0.95936 0.96764 0.97473 1.21780 0.95527 1.01232 1.01238 1.21875 1.01216 1.00624 0.96811 0.90339 0.91223 0.91409 0.82656 0.81364 0.96724 0.87890 1.01859 0.98401 0.93282 0.92394 0.95816 0.91378 0.92036 0.91454 0.92656 0.91942 0.92242 0.91770 0.92818 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.24 9.71 71.24 0.69 -1.55 16 2 C -0.12 -3.99 5.80 -20.92 -0.12 -4.11 16 3 C -0.14 -4.45 9.98 21.22 0.21 -4.23 16 4 C -0.24 -8.58 11.23 66.72 0.75 -7.83 16 5 S 0.09 3.54 20.54 -56.49 -1.16 2.38 16 6 C -0.15 -5.88 4.07 24.58 0.10 -5.78 16 7 C 0.14 5.31 4.50 85.55 0.39 5.70 16 8 N -0.53 -22.10 4.36 -905.36 -3.95 -26.05 16 9 C 0.21 10.83 4.77 85.56 0.41 11.24 16 10 C -0.48 -26.23 6.11 25.60 0.16 -26.08 16 11 H 0.06 3.54 6.05 -2.91 -0.02 3.52 16 12 C 0.02 1.15 5.46 84.65 0.46 1.61 16 13 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 14 Si 0.92 45.02 29.54 68.60 2.03 47.04 16 15 H -0.25 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 18 C 0.05 1.86 4.60 86.30 0.40 2.26 16 19 C -0.10 -2.50 4.31 30.59 0.13 -2.37 16 20 C -0.09 -1.98 2.92 -10.79 -0.03 -2.01 16 21 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 22 C -0.15 -3.19 8.95 71.98 0.64 -2.55 16 23 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.90 5.95 -2.39 -0.01 1.89 16 26 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 27 H 0.17 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.01 0.60 7.71 -2.39 -0.02 0.58 16 29 H 0.10 3.21 5.85 -2.39 -0.01 3.19 16 30 H -0.04 -2.11 7.70 -2.39 -0.02 -2.13 16 31 H 0.00 -0.12 7.57 -2.39 -0.02 -0.14 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.06 2.12 6.26 -2.38 -0.01 2.10 16 34 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 35 H 0.07 1.66 5.95 -2.38 -0.01 1.65 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.04 6.67 -2.39 -0.02 1.03 16 Total: -1.00 -63.41 346.09 3.01 -60.39 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.96 Total: 10.20 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.85 Total: -37.41 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.66 Total: -82.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.16 Total: 2.38 kcal Total: -63.41 3.01 -60.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds