Wall clock time and date at job start Tue Mar 31 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47038 * 2 1 4 4 C 1.53002 * 109.47454 * 306.07847 * 3 2 1 5 5 C 1.53003 * 109.47059 * 295.34432 * 4 3 2 6 6 C 1.53001 * 109.47204 * 66.08111 * 3 2 1 7 7 N 1.46895 * 109.47074 * 91.32722 * 6 3 2 8 8 C 1.46908 * 110.99748 * 283.08635 * 7 6 3 9 9 C 1.50700 * 109.47276 * 301.88785 * 8 7 6 10 10 H 1.08001 * 119.99765 * 4.59816 * 9 8 7 11 11 C 1.37877 * 120.00028 * 184.59326 * 9 8 7 12 12 N 1.31513 * 119.99613 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99969 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46966 * 60.00202 * 13 11 9 15 15 H 1.48499 * 109.46908 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47243 * 300.00437 * 13 11 9 17 17 C 1.46901 * 111.00019 * 159.13613 * 7 6 3 18 18 C 1.50698 * 109.47264 * 197.07240 * 17 7 6 19 19 C 1.33395 * 125.20130 * 92.98127 * 18 17 7 20 20 C 1.38423 * 114.91913 * 179.97438 * 19 18 17 21 21 C 1.33386 * 114.92536 * 359.97438 * 20 19 18 22 22 S 1.75888 * 125.20540 * 272.67531 * 18 17 7 23 23 H 1.08998 * 109.47407 * 185.27374 * 1 2 3 24 24 H 1.09004 * 109.46791 * 305.27140 * 1 2 3 25 25 H 1.08997 * 109.47030 * 65.26844 * 1 2 3 26 26 H 1.08999 * 109.46795 * 240.00478 * 2 1 3 27 27 H 1.08995 * 109.47462 * 120.00624 * 2 1 3 28 28 H 1.09001 * 109.47297 * 186.07741 * 3 2 1 29 29 H 1.08994 * 109.47379 * 55.34793 * 4 3 2 30 30 H 1.08998 * 109.47223 * 175.35051 * 4 3 2 31 31 H 1.09010 * 109.46595 * 65.32250 * 5 4 3 32 32 H 1.08991 * 109.47069 * 185.31711 * 5 4 3 33 33 H 1.08997 * 109.47574 * 305.32280 * 5 4 3 34 34 H 1.08994 * 109.46920 * 331.32552 * 6 3 2 35 35 H 1.09002 * 109.47097 * 211.32291 * 6 3 2 36 36 H 1.08996 * 109.47103 * 61.89178 * 8 7 6 37 37 H 1.08999 * 109.46591 * 181.88993 * 8 7 6 38 38 H 0.97006 * 119.99694 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.47351 * 317.07540 * 17 7 6 40 40 H 1.09005 * 109.47237 * 77.07291 * 17 7 6 41 41 H 1.07997 * 122.53560 * 359.95464 * 19 18 17 42 42 H 1.08008 * 122.53457 * 180.02562 * 20 19 18 43 43 H 1.07999 * 125.20561 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4091 2.2065 -1.1658 5 6 1.8839 1.6015 -2.4885 6 6 1.6586 2.1183 1.3186 7 7 2.7440 1.9397 2.2922 8 6 2.7330 0.5805 2.8495 9 6 1.4002 0.3155 3.5011 10 1 0.6121 1.0511 3.4370 11 6 1.1871 -0.8660 4.1790 12 7 2.1470 -1.7615 4.2573 13 14 -0.4647 -1.1942 4.9873 14 1 -1.5331 -1.1745 3.9559 15 1 -0.4378 -2.5248 5.6460 16 1 -0.7367 -0.1444 6.0017 17 6 2.6653 2.9467 3.3589 18 6 3.9837 3.0124 4.0859 19 6 4.9809 3.8496 3.7958 20 6 6.0987 3.7272 4.6031 21 6 6.0091 2.7912 5.5491 22 16 4.4400 2.0023 5.4516 23 1 -0.3634 -1.0233 0.0945 24 1 -0.3633 0.5935 0.8391 25 1 -0.3633 0.4299 -0.9334 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.1246 1.4444 -0.1088 29 1 0.3234 2.1346 -1.1023 30 1 1.7073 3.2538 -1.1177 31 1 1.5053 0.5833 -2.5789 32 1 1.5110 2.2027 -3.3176 33 1 2.9736 1.5873 -2.5113 34 1 0.7449 1.6682 1.7065 35 1 1.4953 3.1823 1.1476 36 1 2.8963 -0.1415 2.0495 37 1 3.5255 0.4858 3.5918 38 1 1.9972 -2.5927 4.7345 39 1 2.4415 3.9206 2.9235 40 1 1.8770 2.6724 4.0600 41 1 4.9207 4.5681 2.9918 42 1 6.9765 4.3437 4.4771 43 1 6.7804 2.5563 6.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:51 Heat of formation + Delta-G solvation = 21.476027 kcal Electronic energy + Delta-G solvation = -20858.132349 eV Core-core repulsion = 18029.575192 eV Total energy + Delta-G solvation = -2828.557157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.28869 -37.14947 -35.18291 -32.46095 -30.77775 -29.92251 -27.92078 -26.54870 -24.65940 -23.87576 -22.67271 -22.41050 -20.10594 -18.60042 -18.37805 -16.75055 -16.04594 -15.41386 -15.04572 -14.77302 -14.45668 -14.23073 -13.68594 -13.15025 -12.80902 -12.51022 -12.34719 -12.23721 -12.03817 -11.97108 -11.83161 -11.60258 -11.12296 -11.02077 -10.91387 -10.80716 -10.62840 -10.49090 -10.45265 -10.12387 -9.95710 -9.74417 -9.70589 -9.53891 -9.33946 -8.40601 -8.10337 -7.76612 -7.12667 -6.00703 -4.08730 1.59314 2.29612 2.70262 3.27331 3.27742 3.33070 3.35282 4.40712 5.00492 5.29785 5.34246 5.43073 5.47401 5.50701 5.56948 5.76668 5.86127 5.93175 5.96304 5.98407 6.08319 6.15464 6.17866 6.24240 6.29374 6.38026 6.43233 6.47047 6.57126 6.64725 6.69822 6.83479 6.86386 6.88783 7.06442 7.09050 7.19755 7.39942 7.62750 7.96507 8.07901 8.27144 8.34343 9.00071 9.56735 11.03730 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.007826 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.457216 B = 3576.817837 C = 5538.696365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C -0.075 4.075 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.057 3.943 7 N -0.536 5.536 8 C 0.174 3.826 9 C -0.544 4.544 10 H 0.054 0.946 11 C 0.071 3.929 12 N -0.885 5.885 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.122 3.878 18 C -0.137 4.137 19 C -0.153 4.153 20 C -0.137 4.137 21 C -0.249 4.249 22 S 0.144 5.856 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 8.443 -4.621 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.094 4.094 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.071 4.071 7 N -0.260 5.260 8 C 0.049 3.951 9 C -0.583 4.583 10 H 0.072 0.928 11 C -0.132 4.132 12 N -0.523 5.523 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.007 4.007 18 C -0.255 4.255 19 C -0.184 4.184 20 C -0.169 4.169 21 C -0.385 4.385 22 S 0.409 5.591 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.054 7.158 -3.967 8.438 hybrid contribution -0.905 0.621 0.171 1.111 sum 1.149 7.779 -3.797 8.732 Atomic orbital electron populations 1.21786 0.96890 1.00948 1.00582 1.21771 0.95556 0.96522 1.02548 1.21091 1.00207 0.94848 0.93246 1.21641 1.00627 0.98842 0.94607 1.21773 1.01053 1.00816 0.96969 1.22213 0.94824 0.97845 0.92228 1.62586 1.43899 1.05640 1.13840 1.20084 0.96348 0.83534 0.95155 1.21580 0.99529 1.02757 1.34455 0.92809 1.24858 0.96076 0.96221 0.96011 1.69927 1.31963 1.08272 1.42124 0.86878 0.85142 0.77507 0.79867 1.20276 1.21267 1.20384 1.20464 0.90812 0.95936 0.93534 1.24556 1.01079 0.99633 1.00262 1.19946 0.93254 1.02899 1.02277 1.20000 0.99508 1.00279 0.97071 1.25699 1.03060 1.03742 1.06021 1.84979 1.08244 1.36941 1.28956 0.93813 0.92139 0.94038 0.93732 0.88858 0.90994 0.92032 0.92837 0.92690 0.93719 0.92992 0.92103 0.93636 0.94278 0.94155 0.92842 0.91387 0.92517 0.85173 0.85523 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.09 37.16 0.34 -2.11 16 2 C -0.13 -2.27 5.15 -26.73 -0.14 -2.40 16 3 C -0.07 -1.25 2.13 -90.62 -0.19 -1.45 16 4 C -0.12 -1.65 4.91 -26.73 -0.13 -1.78 16 5 C -0.15 -1.84 9.53 37.16 0.35 -1.49 16 6 C 0.06 1.05 4.54 -3.83 -0.02 1.03 16 7 N -0.54 -10.97 4.50 -237.52 -1.07 -12.04 16 8 C 0.17 4.20 4.50 -4.97 -0.02 4.18 16 9 C -0.54 -13.86 7.03 -34.44 -0.24 -14.10 16 10 H 0.05 1.37 6.08 -52.49 -0.32 1.06 16 11 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 12 N -0.88 -24.86 13.29 55.43 0.74 -24.12 16 13 Si 0.88 20.84 29.54 -169.99 -5.02 15.81 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.12 2.34 5.35 -4.98 -0.03 2.31 16 18 C -0.14 -2.55 5.54 -36.00 -0.20 -2.74 16 19 C -0.15 -2.53 10.05 -41.21 -0.41 -2.94 16 20 C -0.14 -2.09 10.18 -41.21 -0.42 -2.51 16 21 C -0.25 -3.93 11.23 29.04 0.33 -3.60 16 22 S 0.14 2.73 21.71 -107.50 -2.33 0.39 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.10 6.17 -51.93 -0.32 0.78 16 25 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 26 H 0.04 0.73 6.99 -51.93 -0.36 0.37 16 27 H 0.09 2.03 4.86 -51.93 -0.25 1.78 16 28 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 29 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 30 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 31 H 0.05 0.69 6.97 -51.92 -0.36 0.33 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.24 3.62 -51.93 -0.19 1.05 16 35 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.04 1.02 5.30 -51.93 -0.28 0.74 16 37 H 0.04 1.06 5.92 -51.93 -0.31 0.75 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.07 1.14 7.64 -51.93 -0.40 0.75 16 40 H 0.06 1.20 6.68 -51.93 -0.35 0.85 16 41 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -26.89 338.15 -10.14 -37.04 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.67 Total: 3.62 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -0.88 Total: -25.80 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.33 Total: -36.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.33 Total: 0.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.89 -10.14 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.513 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds