Wall clock time and date at job start Tue Mar 31 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47038 * 2 1 4 4 C 1.53002 * 109.47454 * 306.07847 * 3 2 1 5 5 C 1.53003 * 109.47059 * 295.34432 * 4 3 2 6 6 C 1.53001 * 109.47204 * 66.08111 * 3 2 1 7 7 N 1.46895 * 109.47074 * 91.32722 * 6 3 2 8 8 C 1.46908 * 110.99748 * 283.08635 * 7 6 3 9 9 C 1.50700 * 109.47276 * 301.88785 * 8 7 6 10 10 H 1.08001 * 119.99765 * 4.59816 * 9 8 7 11 11 C 1.37877 * 120.00028 * 184.59326 * 9 8 7 12 12 N 1.31513 * 119.99613 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99969 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46966 * 60.00202 * 13 11 9 15 15 H 1.48499 * 109.46908 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47243 * 300.00437 * 13 11 9 17 17 C 1.46901 * 111.00019 * 159.13613 * 7 6 3 18 18 C 1.50698 * 109.47264 * 197.07240 * 17 7 6 19 19 C 1.33395 * 125.20130 * 92.98127 * 18 17 7 20 20 C 1.38423 * 114.91913 * 179.97438 * 19 18 17 21 21 C 1.33386 * 114.92536 * 359.97438 * 20 19 18 22 22 S 1.75888 * 125.20540 * 272.67531 * 18 17 7 23 23 H 1.08998 * 109.47407 * 185.27374 * 1 2 3 24 24 H 1.09004 * 109.46791 * 305.27140 * 1 2 3 25 25 H 1.08997 * 109.47030 * 65.26844 * 1 2 3 26 26 H 1.08999 * 109.46795 * 240.00478 * 2 1 3 27 27 H 1.08995 * 109.47462 * 120.00624 * 2 1 3 28 28 H 1.09001 * 109.47297 * 186.07741 * 3 2 1 29 29 H 1.08994 * 109.47379 * 55.34793 * 4 3 2 30 30 H 1.08998 * 109.47223 * 175.35051 * 4 3 2 31 31 H 1.09010 * 109.46595 * 65.32250 * 5 4 3 32 32 H 1.08991 * 109.47069 * 185.31711 * 5 4 3 33 33 H 1.08997 * 109.47574 * 305.32280 * 5 4 3 34 34 H 1.08994 * 109.46920 * 331.32552 * 6 3 2 35 35 H 1.09002 * 109.47097 * 211.32291 * 6 3 2 36 36 H 1.08996 * 109.47103 * 61.89178 * 8 7 6 37 37 H 1.08999 * 109.46591 * 181.88993 * 8 7 6 38 38 H 0.97006 * 119.99694 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.47351 * 317.07540 * 17 7 6 40 40 H 1.09005 * 109.47237 * 77.07291 * 17 7 6 41 41 H 1.07997 * 122.53560 * 359.95464 * 19 18 17 42 42 H 1.08008 * 122.53457 * 180.02562 * 20 19 18 43 43 H 1.07999 * 125.20561 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4091 2.2065 -1.1658 5 6 1.8839 1.6015 -2.4885 6 6 1.6586 2.1183 1.3186 7 7 2.7440 1.9397 2.2922 8 6 2.7330 0.5805 2.8495 9 6 1.4002 0.3155 3.5011 10 1 0.6121 1.0511 3.4370 11 6 1.1871 -0.8660 4.1790 12 7 2.1470 -1.7615 4.2573 13 14 -0.4647 -1.1942 4.9873 14 1 -1.5331 -1.1745 3.9559 15 1 -0.4378 -2.5248 5.6460 16 1 -0.7367 -0.1444 6.0017 17 6 2.6653 2.9467 3.3589 18 6 3.9837 3.0124 4.0859 19 6 4.9809 3.8496 3.7958 20 6 6.0987 3.7272 4.6031 21 6 6.0091 2.7912 5.5491 22 16 4.4400 2.0023 5.4516 23 1 -0.3634 -1.0233 0.0945 24 1 -0.3633 0.5935 0.8391 25 1 -0.3633 0.4299 -0.9334 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.1246 1.4444 -0.1088 29 1 0.3234 2.1346 -1.1023 30 1 1.7073 3.2538 -1.1177 31 1 1.5053 0.5833 -2.5789 32 1 1.5110 2.2027 -3.3176 33 1 2.9736 1.5873 -2.5113 34 1 0.7449 1.6682 1.7065 35 1 1.4953 3.1823 1.1476 36 1 2.8963 -0.1415 2.0495 37 1 3.5255 0.4858 3.5918 38 1 1.9972 -2.5927 4.7345 39 1 2.4415 3.9206 2.9235 40 1 1.8770 2.6724 4.0600 41 1 4.9207 4.5681 2.9918 42 1 6.9765 4.3437 4.4771 43 1 6.7804 2.5563 6.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:50 Heat of formation + Delta-G solvation = 7.949101 kcal Electronic energy + Delta-G solvation = -20858.718920 eV Core-core repulsion = 18029.575192 eV Total energy + Delta-G solvation = -2829.143729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79493 -38.45071 -36.66331 -34.45692 -32.01183 -31.33211 -29.57502 -28.12796 -26.15871 -25.54511 -24.03570 -23.70504 -21.73617 -19.97953 -19.71825 -18.53083 -17.65705 -16.96439 -16.63629 -16.13667 -16.10668 -15.63928 -15.23108 -14.65452 -14.26038 -13.94053 -13.77300 -13.60612 -13.37591 -13.35379 -13.23830 -13.02015 -12.78451 -12.75579 -12.42817 -12.26159 -12.22002 -11.99919 -11.93761 -11.75773 -11.46916 -11.32635 -11.16731 -11.05014 -10.88435 -10.43986 -9.45476 -9.21991 -8.86433 -8.04721 -6.19540 0.26968 0.93236 1.35517 1.36750 1.37916 1.42645 2.01223 2.40569 3.21190 3.52687 4.05966 4.11683 4.19298 4.22971 4.33686 4.52877 4.56008 4.60063 4.65876 4.68199 4.77360 4.85065 4.92708 4.96413 4.98006 5.07301 5.14759 5.21181 5.27966 5.33632 5.37733 5.40865 5.45994 5.54161 5.55155 5.56889 5.74075 5.79986 5.80255 5.99615 6.18023 6.36063 6.65629 6.99421 7.48468 8.96628 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.007826 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.457216 B = 3576.817837 C = 5538.696365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C -0.068 4.068 4 C -0.112 4.112 5 C -0.147 4.147 6 C 0.057 3.943 7 N -0.535 5.535 8 C 0.192 3.808 9 C -0.532 4.532 10 H 0.051 0.949 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.931 3.069 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.126 3.874 18 C -0.160 4.160 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.232 4.232 22 S 0.057 5.943 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 10.723 -6.034 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.150 4.150 5 C -0.204 4.204 6 C -0.071 4.071 7 N -0.258 5.258 8 C 0.065 3.935 9 C -0.571 4.571 10 H 0.069 0.931 11 C -0.176 4.176 12 N -0.559 5.559 13 Si 0.758 3.242 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.003 4.003 18 C -0.278 4.278 19 C -0.170 4.170 20 C -0.166 4.166 21 C -0.367 4.367 22 S 0.320 5.680 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.172 0.828 42 H 0.184 0.816 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.297 9.460 -5.389 11.127 hybrid contribution -0.894 0.001 0.583 1.067 sum 1.403 9.460 -4.806 10.704 Atomic orbital electron populations 1.21725 0.95988 1.00442 1.01390 1.21662 0.96290 0.97177 1.00896 1.21022 0.99507 0.94328 0.93814 1.21583 1.00613 0.99045 0.93762 1.21751 1.00992 1.00899 0.96744 1.22295 0.93240 0.99266 0.92305 1.62567 1.44820 1.04126 1.14322 1.19704 0.94887 0.85257 0.93642 1.21732 0.99885 1.02153 1.33330 0.93141 1.25511 0.98826 0.96358 0.96923 1.70045 1.33674 1.08692 1.43442 0.86022 0.81897 0.77197 0.79100 1.19597 1.21271 1.20110 1.20451 0.90715 0.96488 0.92680 1.24506 1.01786 1.00810 1.00677 1.20330 0.92651 1.01828 1.02213 1.20407 1.00196 1.00052 0.95914 1.25959 1.01261 1.02823 1.06689 1.85260 1.12080 1.39603 1.31019 0.94562 0.93790 0.91065 0.92431 0.93402 0.92369 0.91513 0.91591 0.93042 0.91620 0.93196 0.94202 0.91236 0.96603 0.96367 0.93130 0.88603 0.95279 0.82755 0.81644 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.09 71.98 0.65 -3.95 16 2 C -0.12 -4.43 5.15 30.59 0.16 -4.27 16 3 C -0.07 -2.21 2.13 -10.79 -0.02 -2.24 16 4 C -0.11 -2.80 4.91 30.60 0.15 -2.65 16 5 C -0.15 -3.21 9.53 71.98 0.69 -2.52 16 6 C 0.06 2.05 4.54 86.30 0.39 2.44 16 7 N -0.54 -22.11 4.50 -905.36 -4.07 -26.18 16 8 C 0.19 9.64 4.50 85.56 0.39 10.02 16 9 C -0.53 -28.11 7.03 25.60 0.18 -27.93 16 10 H 0.05 2.66 6.08 -2.91 -0.02 2.64 16 11 C 0.02 1.29 5.46 84.65 0.46 1.75 16 12 N -0.92 -53.81 13.29 21.45 0.28 -53.52 16 13 Si 0.93 43.84 29.54 68.60 2.03 45.86 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 C 0.13 4.81 5.35 85.56 0.46 5.27 16 18 C -0.16 -5.89 5.54 24.59 0.14 -5.76 16 19 C -0.14 -4.25 10.05 21.22 0.21 -4.04 16 20 C -0.14 -3.68 10.18 21.22 0.22 -3.46 16 21 C -0.23 -6.90 11.23 66.72 0.75 -6.15 16 22 S 0.06 2.21 21.71 -56.49 -1.23 0.98 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.60 6.17 -2.38 -0.01 1.58 16 25 H 0.07 1.92 6.56 -2.39 -0.02 1.91 16 26 H 0.06 1.88 6.99 -2.39 -0.02 1.86 16 27 H 0.05 2.18 4.86 -2.39 -0.01 2.17 16 28 H 0.06 2.07 8.02 -2.39 -0.02 2.05 16 29 H 0.07 1.61 6.18 -2.39 -0.01 1.60 16 30 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 31 H 0.05 1.16 6.97 -2.38 -0.02 1.14 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 1.63 3.62 -2.39 -0.01 1.62 16 35 H 0.07 2.17 7.20 -2.39 -0.02 2.15 16 36 H 0.02 0.89 5.30 -2.39 -0.01 0.87 16 37 H 0.02 1.01 5.92 -2.39 -0.01 0.99 16 38 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 39 H 0.10 3.06 7.64 -2.39 -0.02 3.04 16 40 H 0.03 1.26 6.68 -2.38 -0.02 1.25 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.18 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -60.51 338.15 2.82 -57.70 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.99 Total: 18.63 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 4.82 Total: -43.47 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -3.79 Total: -79.70 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.23 Total: 0.98 kcal Total: -60.51 2.82 -57.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.645 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds