Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.52992 * 109.47564 * 64.99903 * 3 2 1 5 5 C 1.53000 * 109.47004 * 58.50378 * 4 3 2 6 6 C 1.53003 * 109.46759 * 185.00304 * 3 2 1 7 7 N 1.46903 * 109.47105 * 177.22612 * 6 3 2 8 8 C 1.46902 * 111.00172 * 169.99591 * 7 6 3 9 9 C 1.50696 * 109.46881 * 290.75088 * 8 7 6 10 10 H 1.07996 * 120.00387 * 3.24480 * 9 8 7 11 11 C 1.37881 * 119.99515 * 183.25133 * 9 8 7 12 12 N 1.31511 * 119.99995 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47115 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47146 * 119.99846 * 13 11 9 16 16 H 1.48492 * 109.46995 * 239.99851 * 13 11 9 17 17 C 1.46903 * 110.99714 * 293.94995 * 7 6 3 18 18 C 1.50699 * 109.47195 * 163.67025 * 17 7 6 19 19 C 1.38426 * 122.53486 * 95.72209 * 18 17 7 20 20 C 1.33391 * 114.91895 * 179.97438 * 19 18 17 21 21 S 1.75880 * 109.59455 * 0.02562 * 20 19 18 22 22 C 1.33384 * 122.54200 * 275.70344 * 18 17 7 23 23 H 1.09002 * 109.47162 * 60.00145 * 1 2 3 24 24 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46911 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.47264 * 239.99343 * 2 1 3 27 27 H 1.09002 * 109.47162 * 119.99855 * 2 1 3 28 28 H 1.09002 * 109.46932 * 304.99706 * 3 2 1 29 29 H 1.08998 * 109.47264 * 178.50196 * 4 3 2 30 30 H 1.09005 * 109.47425 * 298.50776 * 4 3 2 31 31 H 1.08999 * 109.47551 * 304.73127 * 5 4 3 32 32 H 1.08998 * 109.47250 * 64.73562 * 5 4 3 33 33 H 1.09004 * 109.47257 * 184.73165 * 5 4 3 34 34 H 1.08992 * 109.47845 * 57.22394 * 6 3 2 35 35 H 1.09003 * 109.47003 * 297.22264 * 6 3 2 36 36 H 1.08996 * 109.46654 * 50.75119 * 8 7 6 37 37 H 1.08997 * 109.46994 * 170.74728 * 8 7 6 38 38 H 0.97006 * 119.99846 * 180.02562 * 12 11 9 39 39 H 1.09006 * 109.46779 * 43.67542 * 17 7 6 40 40 H 1.08992 * 109.47213 * 283.67373 * 17 7 6 41 41 H 1.07997 * 122.53974 * 359.71285 * 19 18 17 42 42 H 1.07996 * 125.20467 * 179.97438 * 20 19 18 43 43 H 1.08003 * 125.20724 * 0.05222 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1266 1.3072 5 6 2.2145 1.3486 2.4905 6 6 3.5649 1.4443 -0.1258 7 7 4.0491 2.8296 -0.1926 8 6 5.5125 2.8820 -0.0753 9 6 5.9180 2.5004 1.3250 10 1 5.1687 2.1938 2.0397 11 6 7.2460 2.5426 1.6938 12 7 8.1585 2.9155 0.8233 13 14 7.7487 2.0702 3.4298 14 1 6.5424 1.6916 4.2087 15 1 8.6862 0.9197 3.3778 16 1 8.4170 3.2242 4.0828 17 6 3.5960 3.4867 -1.4259 18 6 3.7538 4.9789 -1.2872 19 6 4.8640 5.6573 -1.7599 20 6 4.8458 6.9755 -1.5567 21 16 3.3623 7.4237 -0.7249 22 6 2.8342 5.7462 -0.6999 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8419 29 1 2.0214 3.1458 1.3186 30 1 0.5482 2.1490 1.3843 31 1 1.8957 0.3079 2.4322 32 1 3.3029 1.3974 2.4597 33 1 1.8574 1.7862 3.4228 34 1 3.8554 0.9138 -1.0325 35 1 4.0015 0.9482 0.7410 36 1 5.9590 2.1861 -0.7854 37 1 5.8582 3.8930 -0.2909 38 1 9.0928 2.9449 1.0827 39 1 2.5471 3.2470 -1.6010 40 1 4.1943 3.1346 -2.2661 41 1 5.6846 5.1566 -2.2521 42 1 5.6235 7.6624 -1.8563 43 1 1.9075 5.3915 -0.2735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = 18.577070 kcal Electronic energy + Delta-G solvation = -20808.954704 eV Core-core repulsion = 17980.271838 eV Total energy + Delta-G solvation = -2828.682865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.66558 -37.25722 -34.82404 -32.45634 -30.81093 -29.68576 -28.19498 -27.03073 -25.06483 -23.49525 -22.90937 -22.46111 -20.15745 -18.53369 -18.13681 -17.16519 -16.30238 -15.56777 -14.95895 -14.86715 -14.38012 -14.29506 -13.68627 -13.14189 -12.81873 -12.65881 -12.48548 -12.40836 -12.26096 -11.88347 -11.72196 -11.68649 -11.50740 -11.30034 -11.07885 -10.92142 -10.82967 -10.63631 -10.38270 -10.27271 -10.03104 -9.99503 -9.84173 -9.47378 -9.11707 -8.40927 -8.28686 -7.92666 -7.16560 -5.98840 -3.98417 1.48988 2.11386 2.40762 3.21497 3.32158 3.39986 3.44202 4.45976 4.91368 5.18252 5.29232 5.30616 5.37007 5.44180 5.54867 5.59619 5.69235 5.76750 5.80805 5.91427 5.97925 6.06782 6.09462 6.14250 6.15185 6.21831 6.25583 6.30310 6.46509 6.53680 6.56434 6.68308 6.75433 6.87131 6.94800 7.00316 7.04635 7.36637 7.39554 7.87546 8.16271 8.28145 8.59936 9.09489 9.64957 11.12155 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.008390 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.143848 B = 3336.348548 C = 5648.961213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.085 4.085 4 C -0.105 4.105 5 C -0.156 4.156 6 C 0.066 3.934 7 N -0.524 5.524 8 C 0.191 3.809 9 C -0.499 4.499 10 H 0.064 0.936 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.106 3.894 18 C -0.075 4.075 19 C -0.112 4.112 20 C -0.215 4.215 21 S 0.053 5.947 22 C -0.191 4.191 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.015 0.985 35 H 0.088 0.912 36 H -0.015 1.015 37 H 0.039 0.961 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.702 1.533 -4.208 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.104 4.104 4 C -0.142 4.142 5 C -0.213 4.213 6 C -0.062 4.062 7 N -0.248 5.248 8 C 0.066 3.934 9 C -0.538 4.538 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.024 4.024 18 C -0.088 4.088 19 C -0.143 4.143 20 C -0.350 4.350 21 S 0.315 5.685 22 C -0.327 4.327 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.106 0.894 36 H 0.002 0.998 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.302 3.193 -3.306 14.074 hybrid contribution 1.561 -1.942 -0.191 2.499 sum -11.741 1.251 -3.497 12.315 Atomic orbital electron populations 1.21784 0.96433 1.00803 1.01627 1.21622 0.95309 0.97334 1.01887 1.21258 0.96185 0.94877 0.98095 1.21355 0.98207 1.00772 0.93900 1.21901 1.03000 0.99143 0.97264 1.22092 0.93171 0.90291 1.00689 1.62137 1.15606 1.14727 1.32323 1.19788 0.79887 0.97171 0.96571 1.21210 0.91986 1.43747 0.96862 0.91765 1.24954 0.96683 0.95735 0.97195 1.69962 1.01059 1.48585 1.34284 0.86543 0.78556 0.78003 0.84954 1.19644 1.21235 1.21128 1.20759 0.99860 0.89014 0.92782 1.18846 0.93622 0.96810 0.99494 1.20178 0.98930 0.93218 1.01950 1.25386 1.01898 0.99477 1.08275 1.83931 1.15675 1.09510 1.59383 1.25229 1.04889 0.94650 1.07946 0.93224 0.93465 0.92539 0.92646 0.91467 0.92079 0.90623 0.93789 0.93496 0.90960 0.94009 0.96680 0.89392 0.99760 0.94249 0.93151 0.91054 0.95090 0.84484 0.82461 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.12 -1.58 5.16 -26.73 -0.14 -1.72 16 3 C -0.09 -1.25 2.08 -90.62 -0.19 -1.44 16 4 C -0.10 -1.56 5.32 -26.74 -0.14 -1.70 16 5 C -0.16 -2.42 9.22 37.16 0.34 -2.07 16 6 C 0.07 1.21 3.97 -3.82 -0.02 1.19 16 7 N -0.52 -10.66 3.74 -237.52 -0.89 -11.55 16 8 C 0.19 4.82 4.57 -4.98 -0.02 4.80 16 9 C -0.50 -13.70 8.47 -34.44 -0.29 -14.00 16 10 H 0.06 1.74 6.06 -52.49 -0.32 1.42 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.11 1.88 5.11 -4.97 -0.03 1.85 16 18 C -0.08 -1.32 4.82 -106.25 -0.51 -1.83 16 19 C -0.11 -1.96 8.64 -41.21 -0.36 -2.32 16 20 C -0.22 -3.38 11.23 29.04 0.33 -3.06 16 21 S 0.05 0.78 23.34 -107.50 -2.51 -1.73 16 22 C -0.19 -3.05 10.99 29.04 0.32 -2.73 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.88 6.04 -51.93 -0.31 0.57 16 28 H 0.06 0.87 6.17 -51.93 -0.32 0.55 16 29 H 0.08 1.28 7.64 -51.93 -0.40 0.88 16 30 H 0.04 0.58 6.64 -51.93 -0.34 0.23 16 31 H 0.05 0.65 6.04 -51.93 -0.31 0.34 16 32 H 0.07 1.34 5.43 -51.93 -0.28 1.06 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.09 1.79 5.13 -51.93 -0.27 1.53 16 36 H -0.02 -0.42 8.09 -51.93 -0.42 -0.84 16 37 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 1.11 5.89 -51.93 -0.31 0.80 16 40 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 41 H 0.14 2.43 8.05 -52.49 -0.42 2.01 16 42 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.16 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -28.79 343.00 -9.83 -38.62 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.88 Total: 1.49 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.44 Total: -22.84 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.15 Total: -37.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.79 -9.83 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds