Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.52992 * 109.47564 * 64.99903 * 3 2 1 5 5 C 1.53000 * 109.47004 * 58.50378 * 4 3 2 6 6 C 1.53003 * 109.46759 * 185.00304 * 3 2 1 7 7 N 1.46903 * 109.47105 * 177.22612 * 6 3 2 8 8 C 1.46902 * 111.00172 * 169.99591 * 7 6 3 9 9 C 1.50696 * 109.46881 * 290.75088 * 8 7 6 10 10 H 1.07996 * 120.00387 * 3.24480 * 9 8 7 11 11 C 1.37881 * 119.99515 * 183.25133 * 9 8 7 12 12 N 1.31511 * 119.99995 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47115 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47146 * 119.99846 * 13 11 9 16 16 H 1.48492 * 109.46995 * 239.99851 * 13 11 9 17 17 C 1.46903 * 110.99714 * 293.94995 * 7 6 3 18 18 C 1.50699 * 109.47195 * 163.67025 * 17 7 6 19 19 C 1.38426 * 122.53486 * 95.72209 * 18 17 7 20 20 C 1.33391 * 114.91895 * 179.97438 * 19 18 17 21 21 S 1.75880 * 109.59455 * 0.02562 * 20 19 18 22 22 C 1.33384 * 122.54200 * 275.70344 * 18 17 7 23 23 H 1.09002 * 109.47162 * 60.00145 * 1 2 3 24 24 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46911 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.47264 * 239.99343 * 2 1 3 27 27 H 1.09002 * 109.47162 * 119.99855 * 2 1 3 28 28 H 1.09002 * 109.46932 * 304.99706 * 3 2 1 29 29 H 1.08998 * 109.47264 * 178.50196 * 4 3 2 30 30 H 1.09005 * 109.47425 * 298.50776 * 4 3 2 31 31 H 1.08999 * 109.47551 * 304.73127 * 5 4 3 32 32 H 1.08998 * 109.47250 * 64.73562 * 5 4 3 33 33 H 1.09004 * 109.47257 * 184.73165 * 5 4 3 34 34 H 1.08992 * 109.47845 * 57.22394 * 6 3 2 35 35 H 1.09003 * 109.47003 * 297.22264 * 6 3 2 36 36 H 1.08996 * 109.46654 * 50.75119 * 8 7 6 37 37 H 1.08997 * 109.46994 * 170.74728 * 8 7 6 38 38 H 0.97006 * 119.99846 * 180.02562 * 12 11 9 39 39 H 1.09006 * 109.46779 * 43.67542 * 17 7 6 40 40 H 1.08992 * 109.47213 * 283.67373 * 17 7 6 41 41 H 1.07997 * 122.53974 * 359.71285 * 19 18 17 42 42 H 1.07996 * 125.20467 * 179.97438 * 20 19 18 43 43 H 1.08003 * 125.20724 * 0.05222 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1266 1.3072 5 6 2.2145 1.3486 2.4905 6 6 3.5649 1.4443 -0.1258 7 7 4.0491 2.8296 -0.1926 8 6 5.5125 2.8820 -0.0753 9 6 5.9180 2.5004 1.3250 10 1 5.1687 2.1938 2.0397 11 6 7.2460 2.5426 1.6938 12 7 8.1585 2.9155 0.8233 13 14 7.7487 2.0702 3.4298 14 1 6.5424 1.6916 4.2087 15 1 8.6862 0.9197 3.3778 16 1 8.4170 3.2242 4.0828 17 6 3.5960 3.4867 -1.4259 18 6 3.7538 4.9789 -1.2872 19 6 4.8640 5.6573 -1.7599 20 6 4.8458 6.9755 -1.5567 21 16 3.3623 7.4237 -0.7249 22 6 2.8342 5.7462 -0.6999 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8419 29 1 2.0214 3.1458 1.3186 30 1 0.5482 2.1490 1.3843 31 1 1.8957 0.3079 2.4322 32 1 3.3029 1.3974 2.4597 33 1 1.8574 1.7862 3.4228 34 1 3.8554 0.9138 -1.0325 35 1 4.0015 0.9482 0.7410 36 1 5.9590 2.1861 -0.7854 37 1 5.8582 3.8930 -0.2909 38 1 9.0928 2.9449 1.0827 39 1 2.5471 3.2470 -1.6010 40 1 4.1943 3.1346 -2.2661 41 1 5.6846 5.1566 -2.2521 42 1 5.6235 7.6624 -1.8563 43 1 1.9075 5.3915 -0.2735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = 3.899184 kcal Electronic energy + Delta-G solvation = -20809.591184 eV Core-core repulsion = 17980.271838 eV Total energy + Delta-G solvation = -2829.319346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08730 -38.51481 -36.35490 -34.51339 -31.88697 -31.09367 -29.80936 -28.57612 -26.59105 -24.90608 -24.48484 -23.67694 -21.76768 -19.81507 -19.44369 -18.62609 -18.21001 -16.97521 -16.53359 -16.21148 -15.88910 -15.84799 -15.14421 -14.67006 -14.11969 -13.98856 -13.84594 -13.73934 -13.56741 -13.43221 -13.26894 -13.03575 -12.83839 -12.73423 -12.69822 -12.45202 -12.37946 -12.07112 -11.94782 -11.72828 -11.55525 -11.28407 -11.15110 -10.95582 -10.90934 -10.56076 -9.58841 -9.17806 -8.87336 -8.15945 -6.23048 0.20798 0.88678 1.13681 1.38045 1.39437 1.51837 1.85704 2.41454 3.16787 3.45893 4.01171 4.06438 4.13530 4.21868 4.24271 4.43846 4.46957 4.57562 4.61411 4.68191 4.74806 4.80264 4.83392 4.88264 4.93868 5.02147 5.09785 5.18856 5.19825 5.25191 5.29983 5.39941 5.41892 5.47099 5.53969 5.56674 5.64999 5.70275 5.76805 5.82877 6.15063 6.47743 6.71741 6.94477 7.45213 8.95110 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.008390 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.143848 B = 3336.348548 C = 5648.961213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.074 4.074 4 C -0.100 4.100 5 C -0.153 4.153 6 C 0.067 3.933 7 N -0.522 5.522 8 C 0.209 3.791 9 C -0.508 4.508 10 H 0.064 0.936 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.957 3.043 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.282 1.282 17 C 0.110 3.890 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.220 4.220 21 S 0.105 5.895 22 C -0.194 4.194 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.063 0.937 36 H -0.051 1.051 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.098 0.902 40 H 0.019 0.981 41 H 0.120 0.880 42 H 0.178 0.822 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 1.812 -3.221 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.093 4.093 4 C -0.137 4.137 5 C -0.210 4.210 6 C -0.061 4.061 7 N -0.245 5.245 8 C 0.082 3.918 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.196 4.196 12 N -0.576 5.576 13 Si 0.782 3.218 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.020 4.020 18 C -0.112 4.112 19 C -0.172 4.172 20 C -0.355 4.355 21 S 0.367 5.633 22 C -0.330 4.330 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.082 0.918 36 H -0.033 1.033 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.037 0.963 41 H 0.138 0.862 42 H 0.195 0.805 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.757 3.470 -2.322 16.301 hybrid contribution 2.291 -1.980 -0.537 3.076 sum -13.466 1.489 -2.858 13.846 Atomic orbital electron populations 1.21741 0.94309 1.01904 1.02166 1.21595 0.97044 0.95550 1.01730 1.21183 0.92881 0.96665 0.98585 1.21311 0.99718 0.99272 0.93442 1.21850 1.00506 1.00492 0.98108 1.22114 0.95993 0.88819 0.99149 1.62070 1.12223 1.16122 1.34135 1.19393 0.82969 0.94636 0.94768 1.21524 0.92230 1.43224 0.97715 0.91771 1.25804 0.96779 0.95749 1.01236 1.70093 1.01388 1.49799 1.36337 0.85512 0.78377 0.77754 0.80115 1.18665 1.20633 1.20763 1.20795 1.00899 0.89356 0.90980 1.18861 0.94458 0.96685 1.01223 1.20199 0.99120 0.94266 1.03569 1.25732 1.03113 0.99183 1.07470 1.83727 1.13935 1.07754 1.57845 1.25527 1.05084 0.95624 1.06784 0.92477 0.92188 0.92155 0.92618 0.91977 0.90971 0.92746 0.90982 0.91878 0.94657 0.93154 0.97458 0.91849 1.03320 0.96522 0.93052 0.88364 0.96300 0.86213 0.80491 0.80528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.67 71.98 0.70 -1.94 16 2 C -0.12 -2.85 5.16 30.60 0.16 -2.70 16 3 C -0.07 -2.08 2.08 -10.80 -0.02 -2.10 16 4 C -0.10 -2.78 5.32 30.59 0.16 -2.62 16 5 C -0.15 -4.54 9.22 71.98 0.66 -3.88 16 6 C 0.07 2.52 3.97 86.30 0.34 2.86 16 7 N -0.52 -21.85 3.74 -905.37 -3.39 -25.24 16 8 C 0.21 11.10 4.57 85.56 0.39 11.49 16 9 C -0.51 -28.83 8.47 25.60 0.22 -28.61 16 10 H 0.06 3.58 6.06 -2.91 -0.02 3.56 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 C 0.11 3.93 5.11 85.56 0.44 4.37 16 18 C -0.10 -3.52 4.82 -20.92 -0.10 -3.62 16 19 C -0.14 -5.08 8.64 21.22 0.18 -4.90 16 20 C -0.22 -6.79 11.23 66.72 0.75 -6.04 16 21 S 0.10 2.86 23.34 -56.49 -1.32 1.54 16 22 C -0.19 -5.90 10.99 66.72 0.73 -5.17 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.07 6.60 -2.39 -0.02 1.05 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.53 6.04 -2.39 -0.01 1.51 16 28 H 0.07 1.88 6.17 -2.39 -0.01 1.86 16 29 H 0.05 1.76 7.64 -2.39 -0.02 1.74 16 30 H 0.07 1.63 6.64 -2.38 -0.02 1.62 16 31 H 0.06 1.65 6.04 -2.39 -0.01 1.63 16 32 H 0.03 1.31 5.43 -2.39 -0.01 1.29 16 33 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.01 0.28 8.12 -2.39 -0.02 0.26 16 35 H 0.06 2.68 5.13 -2.39 -0.01 2.67 16 36 H -0.05 -2.99 8.09 -2.39 -0.02 -3.01 16 37 H 0.02 0.96 6.17 -2.39 -0.01 0.95 16 38 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 39 H 0.10 2.94 5.89 -2.38 -0.01 2.92 16 40 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 41 H 0.12 4.60 8.05 -2.91 -0.02 4.58 16 42 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -63.69 343.00 3.65 -60.04 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.98 Total: 15.51 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 5.07 Total: -42.30 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -3.11 Total: -81.96 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.54 kcal Total: -63.69 3.65 -60.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.939 kcal (2) G-P(sol) polarization free energy of solvation -63.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds