Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33382 * 125.20147 * 2 1 4 4 C 1.38426 * 114.92241 * 179.97438 * 3 2 1 5 5 C 1.33393 * 114.91710 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20401 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47156 * 82.10534 * 6 5 4 8 8 C 1.46895 * 111.00170 * 154.72818 * 7 6 5 9 9 C 1.50696 * 109.46954 * 206.92956 * 8 7 6 10 10 H 1.07991 * 120.00123 * 5.16065 * 9 8 7 11 11 C 1.37883 * 119.99675 * 185.15830 * 9 8 7 12 12 N 1.31519 * 120.00197 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47450 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47181 * 120.00207 * 13 11 9 16 16 H 1.48498 * 109.47690 * 240.00280 * 13 11 9 17 17 C 1.46904 * 110.99626 * 278.68305 * 7 6 5 18 18 C 1.52994 * 109.47388 * 315.06891 * 17 7 6 19 19 C 1.52998 * 109.47218 * 82.10345 * 18 17 7 20 20 C 1.53000 * 109.47077 * 202.10729 * 18 17 7 21 21 C 1.53004 * 109.47069 * 322.10330 * 18 17 7 22 22 S 1.75878 * 125.20299 * 179.69930 * 2 1 3 23 23 H 1.08999 * 109.47246 * 89.99803 * 1 2 3 24 24 H 1.09000 * 109.47104 * 329.99421 * 1 2 3 25 25 H 1.09001 * 109.46938 * 209.99604 * 1 2 3 26 26 H 1.08001 * 122.54465 * 359.96326 * 3 2 1 27 27 H 1.07999 * 122.54162 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47612 * 202.10988 * 6 5 4 29 29 H 1.09005 * 109.46765 * 322.11014 * 6 5 4 30 30 H 1.09008 * 109.46963 * 326.92862 * 8 7 6 31 31 H 1.09005 * 109.46828 * 86.92375 * 8 7 6 32 32 H 0.96997 * 119.99689 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.47165 * 75.07744 * 17 7 6 34 34 H 1.09003 * 109.46442 * 195.07126 * 17 7 6 35 35 H 1.09003 * 109.46852 * 70.40266 * 19 18 17 36 36 H 1.08998 * 109.47301 * 190.40427 * 19 18 17 37 37 H 1.09003 * 109.47214 * 310.39844 * 19 18 17 38 38 H 1.08990 * 109.47607 * 60.00118 * 20 18 17 39 39 H 1.09005 * 109.47127 * 179.97438 * 20 18 17 40 40 H 1.09002 * 109.46896 * 299.99533 * 20 18 17 41 41 H 1.08995 * 109.46944 * 41.03971 * 21 18 17 42 42 H 1.09000 * 109.47200 * 161.04197 * 21 18 17 43 43 H 1.08996 * 109.47348 * 281.03644 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0016 6 6 5.3860 -0.9771 0.0018 7 7 5.9115 -0.9699 1.3736 8 6 6.9708 -1.9744 1.5369 9 6 7.0272 -2.4154 2.9767 10 1 6.2919 -2.0554 3.6810 11 6 8.0176 -3.2787 3.3950 12 7 8.9134 -3.7169 2.5375 13 14 8.0880 -3.8249 5.1799 14 1 6.9755 -3.1942 5.9348 15 1 7.9586 -5.3025 5.2510 16 1 9.3854 -3.4126 5.7731 17 6 6.3921 0.3674 1.7462 18 6 7.2221 0.9487 0.5999 19 6 6.2884 1.5577 -0.4480 20 6 8.1544 2.0330 1.1442 21 6 8.0537 -0.1633 -0.0426 22 16 2.5210 -1.4371 0.0075 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 0.8899 0.5139 25 1 -0.3633 -0.8900 0.5138 26 1 1.8670 2.0895 -0.0006 27 1 4.3721 1.6351 0.0002 28 1 5.3918 -1.9964 -0.3842 29 1 6.0110 -0.3458 -0.6300 30 1 6.7573 -2.8341 0.9016 31 1 7.9295 -1.5411 1.2516 32 1 9.6099 -4.3245 2.8317 33 1 5.5400 1.0176 1.9440 34 1 7.0096 0.2951 2.6415 35 1 5.8330 2.4630 -0.0465 36 1 6.8589 1.8043 -1.3435 37 1 5.5082 0.8397 -0.7007 38 1 8.8195 1.5992 1.8906 39 1 8.7460 2.4469 0.3276 40 1 7.5619 2.8252 1.6019 41 1 7.4502 -1.0672 -0.1243 42 1 8.3744 0.1505 -1.0360 43 1 8.9290 -0.3653 0.5746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = 94.815980 kcal Electronic energy + Delta-G solvation = -21033.661751 eV Core-core repulsion = 18208.284853 eV Total energy + Delta-G solvation = -2825.376898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09481 -37.34939 -33.99610 -32.83189 -31.81023 -28.89839 -27.70285 -26.90734 -26.48813 -24.94450 -23.37825 -22.14113 -20.51608 -18.80392 -18.27842 -16.66664 -16.18530 -15.47835 -14.95826 -14.82009 -14.39899 -14.03196 -13.79784 -13.46318 -13.19724 -12.94829 -12.78716 -12.27444 -12.19461 -11.92179 -11.76354 -11.47766 -11.24815 -11.13927 -11.06383 -10.98453 -10.78151 -10.69493 -10.49063 -10.38742 -10.29440 -9.92330 -9.74084 -9.57447 -9.11960 -8.36270 -8.12262 -8.08202 -7.03072 -5.97050 -3.97213 1.33316 1.96674 2.39108 3.05832 3.33135 3.40964 3.46837 4.46952 4.99551 5.03150 5.16864 5.21707 5.30618 5.33696 5.36940 5.44769 5.51225 5.60541 5.69467 5.81803 5.87970 5.94230 5.96213 6.02004 6.08512 6.09224 6.19719 6.28011 6.36935 6.38704 6.48627 6.61146 6.63623 6.70666 6.82389 6.87139 6.87530 7.22682 7.43904 7.89357 8.14833 8.23520 8.59531 9.11253 9.66054 11.12022 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.005839 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.222557 B = 4794.103648 C = 5969.542329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.203 4.203 3 C -0.135 4.135 4 C -0.176 4.176 5 C -0.133 4.133 6 C 0.074 3.926 7 N -0.523 5.523 8 C 0.162 3.838 9 C -0.497 4.497 10 H 0.061 0.939 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.072 3.928 18 C -0.101 4.101 19 C -0.189 4.189 20 C -0.134 4.134 21 C -0.165 4.165 22 S 0.100 5.900 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.129 0.871 27 H 0.158 0.842 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 10.315 -7.669 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.320 4.320 3 C -0.166 4.166 4 C -0.206 4.206 5 C -0.252 4.252 6 C -0.055 4.055 7 N -0.246 5.246 8 C 0.038 3.962 9 C -0.536 4.536 10 H 0.080 0.920 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.057 4.057 18 C -0.103 4.103 19 C -0.245 4.245 20 C -0.192 4.192 21 C -0.222 4.222 22 S 0.364 5.636 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.175 0.825 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.426 8.483 -7.334 15.312 hybrid contribution 1.097 1.348 0.557 1.825 sum -9.330 9.831 -6.776 15.153 Atomic orbital electron populations 1.20246 0.88551 1.02662 1.02069 1.24405 0.99510 0.96453 1.11661 1.20027 0.93213 0.98592 1.04733 1.20878 0.96491 0.97119 1.06094 1.24618 0.98688 0.95895 1.05950 1.21619 0.88957 1.01040 0.93907 1.62193 1.37697 1.05391 1.19282 1.20548 0.89197 0.88889 0.97539 1.21268 1.11493 1.26224 0.94644 0.92028 1.24953 0.95658 0.96543 0.97504 1.69956 1.16220 1.33880 1.34125 0.86507 0.77735 0.78333 0.85245 1.19734 1.21171 1.21229 1.22191 0.96729 0.89992 0.96799 1.21177 0.96078 0.95951 0.97065 1.23301 1.01219 1.01380 0.98570 1.21828 0.98967 0.97973 1.00432 1.22778 1.00965 0.99389 0.99042 1.84272 0.96937 1.09445 1.72933 0.91371 0.91098 0.91672 0.85296 0.82457 0.91068 0.88581 0.96301 0.94257 0.93148 0.92355 0.90202 0.92771 0.93319 0.87671 0.92408 0.93473 0.93195 0.89465 0.94303 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.38 36.01 0.37 -0.40 16 2 C -0.20 -2.73 6.51 -36.00 -0.23 -2.96 16 3 C -0.13 -1.82 10.05 -41.21 -0.41 -2.23 16 4 C -0.18 -2.60 7.99 -41.21 -0.33 -2.93 16 5 C -0.13 -2.19 5.73 -36.00 -0.21 -2.39 16 6 C 0.07 1.32 4.01 -4.97 -0.02 1.30 16 7 N -0.52 -10.91 4.47 -237.52 -1.06 -11.97 16 8 C 0.16 4.03 3.45 -4.98 -0.02 4.01 16 9 C -0.50 -13.85 8.92 -34.44 -0.31 -14.16 16 10 H 0.06 1.76 7.81 -52.49 -0.41 1.34 16 11 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 13 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.07 1.34 4.76 -3.82 -0.02 1.32 16 18 C -0.10 -1.59 0.77 -154.51 -0.12 -1.71 16 19 C -0.19 -2.55 6.06 37.16 0.23 -2.32 16 20 C -0.13 -1.92 8.26 37.16 0.31 -1.61 16 21 C -0.17 -2.89 6.31 37.16 0.23 -2.66 16 22 S 0.10 1.55 23.31 -107.50 -2.51 -0.96 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.16 2.14 3.80 -52.49 -0.20 1.94 16 28 H 0.07 1.33 7.40 -51.93 -0.38 0.95 16 29 H 0.10 1.58 2.50 -51.93 -0.13 1.45 16 30 H 0.02 0.51 7.39 -51.92 -0.38 0.12 16 31 H 0.04 1.00 4.04 -51.93 -0.21 0.79 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.06 1.03 7.16 -51.93 -0.37 0.66 16 34 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 35 H 0.05 0.66 7.05 -51.93 -0.37 0.30 16 36 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 37 H 0.11 1.48 1.95 -51.93 -0.10 1.38 16 38 H 0.06 0.89 8.11 -51.93 -0.42 0.46 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.68 3.00 -51.93 -0.16 1.52 16 42 H 0.04 0.59 7.84 -51.93 -0.41 0.19 16 43 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -29.10 328.15 -9.91 -39.00 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.38 Total: 3.11 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.62 Total: -25.33 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.33 Total: -37.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.10 -9.91 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.819 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds