Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33382 * 125.20147 * 2 1 4 4 C 1.38426 * 114.92241 * 179.97438 * 3 2 1 5 5 C 1.33393 * 114.91710 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20401 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47156 * 82.10534 * 6 5 4 8 8 C 1.46895 * 111.00170 * 154.72818 * 7 6 5 9 9 C 1.50696 * 109.46954 * 206.92956 * 8 7 6 10 10 H 1.07991 * 120.00123 * 5.16065 * 9 8 7 11 11 C 1.37883 * 119.99675 * 185.15830 * 9 8 7 12 12 N 1.31519 * 120.00197 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47450 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47181 * 120.00207 * 13 11 9 16 16 H 1.48498 * 109.47690 * 240.00280 * 13 11 9 17 17 C 1.46904 * 110.99626 * 278.68305 * 7 6 5 18 18 C 1.52994 * 109.47388 * 315.06891 * 17 7 6 19 19 C 1.52998 * 109.47218 * 82.10345 * 18 17 7 20 20 C 1.53000 * 109.47077 * 202.10729 * 18 17 7 21 21 C 1.53004 * 109.47069 * 322.10330 * 18 17 7 22 22 S 1.75878 * 125.20299 * 179.69930 * 2 1 3 23 23 H 1.08999 * 109.47246 * 89.99803 * 1 2 3 24 24 H 1.09000 * 109.47104 * 329.99421 * 1 2 3 25 25 H 1.09001 * 109.46938 * 209.99604 * 1 2 3 26 26 H 1.08001 * 122.54465 * 359.96326 * 3 2 1 27 27 H 1.07999 * 122.54162 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47612 * 202.10988 * 6 5 4 29 29 H 1.09005 * 109.46765 * 322.11014 * 6 5 4 30 30 H 1.09008 * 109.46963 * 326.92862 * 8 7 6 31 31 H 1.09005 * 109.46828 * 86.92375 * 8 7 6 32 32 H 0.96997 * 119.99689 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.47165 * 75.07744 * 17 7 6 34 34 H 1.09003 * 109.46442 * 195.07126 * 17 7 6 35 35 H 1.09003 * 109.46852 * 70.40266 * 19 18 17 36 36 H 1.08998 * 109.47301 * 190.40427 * 19 18 17 37 37 H 1.09003 * 109.47214 * 310.39844 * 19 18 17 38 38 H 1.08990 * 109.47607 * 60.00118 * 20 18 17 39 39 H 1.09005 * 109.47127 * 179.97438 * 20 18 17 40 40 H 1.09002 * 109.46896 * 299.99533 * 20 18 17 41 41 H 1.08995 * 109.46944 * 41.03971 * 21 18 17 42 42 H 1.09000 * 109.47200 * 161.04197 * 21 18 17 43 43 H 1.08996 * 109.47348 * 281.03644 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0016 6 6 5.3860 -0.9771 0.0018 7 7 5.9115 -0.9699 1.3736 8 6 6.9708 -1.9744 1.5369 9 6 7.0272 -2.4154 2.9767 10 1 6.2919 -2.0554 3.6810 11 6 8.0176 -3.2787 3.3950 12 7 8.9134 -3.7169 2.5375 13 14 8.0880 -3.8249 5.1799 14 1 6.9755 -3.1942 5.9348 15 1 7.9586 -5.3025 5.2510 16 1 9.3854 -3.4126 5.7731 17 6 6.3921 0.3674 1.7462 18 6 7.2221 0.9487 0.5999 19 6 6.2884 1.5577 -0.4480 20 6 8.1544 2.0330 1.1442 21 6 8.0537 -0.1633 -0.0426 22 16 2.5210 -1.4371 0.0075 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 0.8899 0.5139 25 1 -0.3633 -0.8900 0.5138 26 1 1.8670 2.0895 -0.0006 27 1 4.3721 1.6351 0.0002 28 1 5.3918 -1.9964 -0.3842 29 1 6.0110 -0.3458 -0.6300 30 1 6.7573 -2.8341 0.9016 31 1 7.9295 -1.5411 1.2516 32 1 9.6099 -4.3245 2.8317 33 1 5.5400 1.0176 1.9440 34 1 7.0096 0.2951 2.6415 35 1 5.8330 2.4630 -0.0465 36 1 6.8589 1.8043 -1.3435 37 1 5.5082 0.8397 -0.7007 38 1 8.8195 1.5992 1.8906 39 1 8.7460 2.4469 0.3276 40 1 7.5619 2.8252 1.6019 41 1 7.4502 -1.0672 -0.1243 42 1 8.3744 0.1505 -1.0360 43 1 8.9290 -0.3653 0.5746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = 78.680051 kcal Electronic energy + Delta-G solvation = -21034.361458 eV Core-core repulsion = 18208.284853 eV Total energy + Delta-G solvation = -2826.076605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51235 -38.49856 -35.62651 -34.50238 -33.24402 -30.17907 -29.28316 -28.28164 -27.95105 -26.29261 -24.89346 -23.44653 -22.15281 -20.04570 -19.52726 -18.49286 -17.64526 -16.87638 -16.69368 -16.18693 -15.93320 -15.52966 -14.96559 -14.64711 -14.55387 -14.27152 -13.94443 -13.80698 -13.42181 -13.15855 -13.04591 -12.92157 -12.85444 -12.55089 -12.50930 -12.35938 -12.30119 -12.24636 -12.08972 -11.85230 -11.57399 -11.52526 -11.40812 -11.08660 -10.90617 -10.49304 -9.29903 -9.24875 -8.69192 -8.12001 -6.22503 0.19604 0.82576 1.25581 1.38013 1.39433 1.52363 1.95221 2.41868 3.15963 3.48643 3.88260 3.93914 4.02831 4.09910 4.13773 4.25872 4.44651 4.53728 4.59398 4.67857 4.73667 4.79337 4.82215 4.85575 4.87285 4.93395 4.96097 5.09564 5.13006 5.17517 5.19483 5.30263 5.31887 5.39986 5.44105 5.49830 5.50614 5.56803 5.73816 5.78988 6.17783 6.49077 6.68941 6.93525 7.45425 8.93923 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.005839 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.222557 B = 4794.103648 C = 5969.542329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.187 4.187 3 C -0.145 4.145 4 C -0.160 4.160 5 C -0.164 4.164 6 C 0.082 3.918 7 N -0.536 5.536 8 C 0.179 3.821 9 C -0.515 4.515 10 H 0.049 0.951 11 C 0.005 3.995 12 N -0.932 5.932 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.277 1.277 17 C 0.075 3.925 18 C -0.096 4.096 19 C -0.184 4.184 20 C -0.130 4.130 21 C -0.162 4.162 22 S 0.053 5.947 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.162 0.838 27 H 0.173 0.827 28 H 0.048 0.952 29 H 0.114 0.886 30 H -0.013 1.013 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 12.870 -7.866 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.304 4.304 3 C -0.175 4.175 4 C -0.190 4.190 5 C -0.281 4.281 6 C -0.046 4.046 7 N -0.259 5.259 8 C 0.054 3.946 9 C -0.554 4.554 10 H 0.067 0.933 11 C -0.192 4.192 12 N -0.573 5.573 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.203 1.203 17 C -0.053 4.053 18 C -0.097 4.097 19 C -0.239 4.239 20 C -0.188 4.188 21 C -0.218 4.218 22 S 0.317 5.683 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.179 0.821 27 H 0.190 0.810 28 H 0.066 0.934 29 H 0.131 0.869 30 H 0.005 0.995 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.930 11.052 -7.537 17.924 hybrid contribution 1.488 0.584 0.580 1.701 sum -10.442 11.635 -6.957 17.112 Atomic orbital electron populations 1.20399 0.85990 1.03748 1.03536 1.24856 1.00985 0.94843 1.09754 1.20354 0.92528 1.00039 1.04592 1.21148 0.97670 0.96481 1.03724 1.24392 0.97676 0.96743 1.09318 1.21530 0.90490 1.00330 0.92288 1.62071 1.36324 1.05762 1.21745 1.20205 0.90205 0.88917 0.95287 1.21558 1.11309 1.26558 0.95943 0.93286 1.25744 0.95261 0.96515 1.01704 1.70063 1.16770 1.34418 1.36034 0.85494 0.77959 0.77915 0.80205 1.19440 1.20616 1.20284 1.22149 0.97171 0.89195 0.96829 1.21105 0.96234 0.95746 0.96641 1.23200 1.00596 1.01772 0.98359 1.21787 0.98716 0.97688 1.00610 1.22666 0.99780 0.99396 1.00000 1.84422 0.98146 1.11801 1.73947 0.89625 0.89007 0.91528 0.82104 0.81022 0.93392 0.86886 0.99535 0.94903 0.92914 0.90920 0.93257 0.90507 0.91544 0.88432 0.94422 0.91649 0.91288 0.91751 0.91844 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.38 71.24 0.74 -0.58 16 2 C -0.19 -4.57 6.51 24.59 0.16 -4.41 16 3 C -0.15 -3.43 10.05 21.22 0.21 -3.22 16 4 C -0.16 -4.33 7.99 21.22 0.17 -4.16 16 5 C -0.16 -5.31 5.73 24.59 0.14 -5.17 16 6 C 0.08 3.01 4.01 85.55 0.34 3.35 16 7 N -0.54 -23.22 4.47 -905.36 -4.05 -27.27 16 8 C 0.18 9.42 3.45 85.56 0.29 9.71 16 9 C -0.51 -29.91 8.92 25.60 0.23 -29.68 16 10 H 0.05 2.90 7.81 -2.92 -0.02 2.88 16 11 C 0.01 0.31 5.46 84.66 0.46 0.77 16 12 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 13 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 C 0.07 2.81 4.76 86.30 0.41 3.22 16 18 C -0.10 -2.92 0.77 -52.18 -0.04 -2.96 16 19 C -0.18 -4.39 6.06 71.98 0.44 -3.95 16 20 C -0.13 -3.49 8.26 71.98 0.59 -2.90 16 21 C -0.16 -5.75 6.31 71.98 0.45 -5.29 16 22 S 0.05 1.65 23.31 -56.49 -1.32 0.33 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.17 4.05 3.80 -2.91 -0.01 4.04 16 28 H 0.05 1.93 7.40 -2.39 -0.02 1.91 16 29 H 0.11 3.71 2.50 -2.38 -0.01 3.70 16 30 H -0.01 -0.77 7.39 -2.38 -0.02 -0.79 16 31 H 0.03 1.78 4.04 -2.38 -0.01 1.77 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.07 2.49 7.16 -2.39 -0.02 2.47 16 34 H 0.05 2.12 7.42 -2.39 -0.02 2.10 16 35 H 0.08 1.53 7.05 -2.39 -0.02 1.51 16 36 H 0.07 1.40 7.91 -2.39 -0.02 1.38 16 37 H 0.10 2.53 1.95 -2.39 0.00 2.53 16 38 H 0.04 1.14 8.11 -2.39 -0.02 1.12 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.06 2.59 3.00 -2.39 -0.01 2.58 16 42 H 0.06 1.89 7.84 -2.39 -0.02 1.87 16 43 H 0.04 1.49 7.11 -2.39 -0.02 1.47 16 Total: -1.00 -65.25 328.15 2.56 -62.68 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.01 Total: 17.72 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.61 Total: -45.26 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.76 Total: -83.09 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -65.25 2.56 -62.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.364 kcal (2) G-P(sol) polarization free energy of solvation -65.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds