Wall clock time and date at job start Tue Mar 31 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38428 * 122.54222 * 2 1 4 4 C 1.33386 * 114.92330 * 179.97438 * 3 2 1 5 5 S 1.75880 * 109.59273 * 0.02562 * 4 3 2 6 6 C 1.33392 * 122.53974 * 179.97438 * 2 1 3 7 7 C 1.50692 * 125.20448 * 0.05770 * 6 2 1 8 8 N 1.46906 * 109.47181 * 81.28031 * 7 6 2 9 9 C 1.46897 * 111.00135 * 54.67627 * 8 7 6 10 10 C 1.50699 * 109.47056 * 190.00380 * 9 8 7 11 11 H 1.07996 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99975 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99742 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00037 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47036 * 60.00066 * 14 12 10 16 16 H 1.48498 * 109.46959 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46665 * 300.00012 * 14 12 10 18 18 C 1.46904 * 111.00107 * 178.63316 * 8 7 6 19 19 C 1.52999 * 109.47215 * 82.20783 * 18 8 7 20 20 C 1.52997 * 109.46903 * 51.15197 * 19 18 8 21 21 C 1.53000 * 109.46796 * 171.15176 * 19 18 8 22 22 C 1.52996 * 109.47210 * 291.14804 * 19 18 8 23 23 H 1.08994 * 109.47097 * 263.06342 * 1 2 3 24 24 H 1.08997 * 109.46969 * 23.06762 * 1 2 3 25 25 H 1.09003 * 109.46915 * 143.06832 * 1 2 3 26 26 H 1.08002 * 122.53344 * 359.96022 * 3 2 1 27 27 H 1.08000 * 125.19704 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47715 * 201.27596 * 7 6 2 29 29 H 1.09004 * 109.47367 * 321.27853 * 7 6 2 30 30 H 1.09009 * 109.46732 * 309.99944 * 9 8 7 31 31 H 1.08999 * 109.47457 * 69.99687 * 9 8 7 32 32 H 0.96999 * 119.99933 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46720 * 202.21063 * 18 8 7 34 34 H 1.09004 * 109.46559 * 322.20955 * 18 8 7 35 35 H 1.08999 * 109.47404 * 59.99910 * 20 19 18 36 36 H 1.09006 * 109.46981 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47786 * 299.99782 * 20 19 18 38 38 H 1.08998 * 109.47370 * 60.00290 * 21 19 18 39 39 H 1.08997 * 109.46851 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47252 * 300.00278 * 21 19 18 41 41 H 1.09007 * 109.46730 * 72.40346 * 22 19 18 42 42 H 1.09001 * 109.47334 * 192.39618 * 22 19 18 43 43 H 1.08999 * 109.47579 * 312.40253 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0001 8 7 1.2751 -2.8927 -1.3695 9 6 2.4094 -2.7384 -2.2900 10 6 1.9282 -2.8902 -3.7100 11 1 0.8843 -3.0825 -3.9088 12 6 2.8208 -2.7835 -4.7556 13 7 4.0920 -2.5488 -4.5135 14 14 2.2244 -2.9723 -6.5157 15 1 1.2048 -1.9329 -6.8070 16 1 3.3711 -2.8162 -7.4462 17 1 1.6235 -4.3187 -6.6929 18 6 0.7435 -4.2615 -1.4139 19 6 -0.7320 -4.2489 -1.0096 20 6 -1.4782 -3.1992 -1.8355 21 6 -1.3428 -5.6281 -1.2659 22 6 -0.8506 -3.9070 0.4770 23 1 -0.3633 -0.1241 1.0201 24 1 -0.3633 0.9455 -0.4026 25 1 -0.3633 -0.8215 -0.6175 26 1 1.7965 2.1464 -0.0006 27 1 4.3077 1.7823 0.0010 28 1 2.4020 -3.2183 0.3733 29 1 0.7735 -2.5519 0.6420 30 1 2.8512 -1.7504 -2.1597 31 1 3.1574 -3.5019 -2.0762 32 1 4.7200 -2.4741 -5.2490 33 1 0.8398 -4.6559 -2.4255 34 1 1.3042 -4.8915 -0.7233 35 1 -1.3937 -3.4429 -2.8946 36 1 -2.5295 -3.1906 -1.5478 37 1 -1.0431 -2.2166 -1.6530 38 1 -0.8112 -6.3760 -0.6775 39 1 -2.3941 -5.6191 -0.9783 40 1 -1.2582 -5.8718 -2.3250 41 1 -0.6225 -2.8516 0.6263 42 1 -1.8660 -4.1108 0.8169 43 1 -0.1478 -4.5148 1.0468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:20 Heat of formation + Delta-G solvation = 27.427856 kcal Electronic energy + Delta-G solvation = -21233.665309 eV Core-core repulsion = 18405.366243 eV Total energy + Delta-G solvation = -2828.299067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.73011 -37.38080 -34.63939 -32.47182 -30.70144 -28.60858 -27.33767 -26.71650 -26.63914 -24.99559 -23.44251 -22.10617 -20.48707 -18.36281 -17.70364 -16.72750 -16.26292 -15.21007 -14.67169 -14.55254 -14.50365 -13.99886 -13.49228 -13.11293 -13.09279 -12.69063 -12.44046 -12.24518 -12.00879 -11.86671 -11.76183 -11.60856 -11.42396 -11.26942 -11.16332 -10.84059 -10.80899 -10.64652 -10.55391 -10.23790 -10.15190 -10.02666 -9.89120 -9.51648 -9.12415 -8.38803 -8.02889 -7.70798 -7.16254 -5.95444 -3.95662 1.52957 2.20405 2.56513 3.20509 3.35672 3.40009 3.42694 4.47215 4.97852 5.27837 5.31087 5.33057 5.37693 5.40464 5.53408 5.70197 5.82797 5.87585 5.89719 5.97209 6.01617 6.04328 6.07542 6.10872 6.11059 6.25105 6.33166 6.43229 6.46057 6.52097 6.56227 6.63723 6.73084 6.91802 6.94160 7.07618 7.19736 7.40809 7.42188 7.86552 8.17679 8.27039 8.61030 9.11290 9.67031 11.15023 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.008775 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.143869 B = 3189.964068 C = 4953.330391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.226 4.226 5 S 0.099 5.901 6 C -0.149 4.149 7 C 0.106 3.894 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.503 4.503 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.070 3.930 19 C -0.064 4.064 20 C -0.126 4.126 21 C -0.139 4.139 22 C -0.147 4.147 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.025 0.975 29 H 0.098 0.902 30 H 0.043 0.957 31 H -0.016 1.016 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.019 0.981 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 1.725 11.067 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.162 4.162 4 C -0.362 4.362 5 S 0.365 5.635 6 C -0.267 4.267 7 C -0.024 4.024 8 N -0.244 5.244 9 C 0.062 3.938 10 C -0.542 4.542 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.204 1.204 18 C -0.059 4.059 19 C -0.064 4.064 20 C -0.183 4.183 21 C -0.197 4.197 22 C -0.204 4.204 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.002 0.998 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.653 1.222 10.816 12.265 hybrid contribution -0.552 0.287 -0.924 1.114 sum -6.205 1.509 9.892 11.774 Atomic orbital electron populations 1.20552 0.90195 1.03120 1.01348 1.18670 0.97241 0.91297 1.04268 1.19957 0.92869 0.98919 1.04420 1.25430 0.99624 0.99252 1.11850 1.84370 1.06934 0.99959 1.72228 1.24200 0.94841 0.99146 1.08504 1.21093 0.98452 0.88921 0.93885 1.62196 1.35600 1.22833 1.03816 1.19878 0.86463 0.97045 0.90425 1.21102 0.94755 1.48041 0.90255 0.91939 1.24952 0.94867 0.95691 0.98960 1.69960 1.02148 1.49644 1.31730 0.86657 0.78089 0.78556 0.84665 1.20268 1.21494 1.20411 1.22130 0.92498 0.89519 1.01723 1.20543 0.96122 0.94926 0.94855 1.21722 0.97074 1.00096 0.99446 1.21849 0.99695 0.96592 1.01534 1.22207 1.00378 1.01792 0.95998 0.92490 0.92429 0.89711 0.85142 0.82681 0.95723 0.88415 0.93884 0.99793 0.93064 0.89483 0.96281 0.92982 0.94859 0.90713 0.93371 0.93256 0.92648 0.91272 0.93617 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.57 36.00 0.34 -1.00 16 2 C -0.10 -1.73 5.80 -106.25 -0.62 -2.35 16 3 C -0.13 -2.07 9.96 -41.21 -0.41 -2.48 16 4 C -0.23 -3.62 11.23 29.04 0.33 -3.29 16 5 S 0.10 1.80 22.29 -107.50 -2.40 -0.60 16 6 C -0.15 -2.74 4.54 -36.01 -0.16 -2.90 16 7 C 0.11 1.90 4.37 -4.98 -0.02 1.87 16 8 N -0.52 -10.60 3.31 -237.51 -0.79 -11.39 16 9 C 0.19 4.78 4.48 -4.98 -0.02 4.75 16 10 C -0.50 -13.88 8.16 -34.44 -0.28 -14.16 16 11 H 0.06 1.70 7.41 -52.49 -0.39 1.31 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 C 0.07 1.30 4.01 -3.82 -0.02 1.28 16 19 C -0.06 -0.96 0.85 -154.51 -0.13 -1.09 16 20 C -0.13 -1.99 8.18 37.16 0.30 -1.68 16 21 C -0.14 -1.86 8.43 37.16 0.31 -1.54 16 22 C -0.15 -1.93 7.16 37.16 0.27 -1.66 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.08 1.33 5.67 -51.93 -0.29 1.04 16 26 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.02 0.46 8.03 -51.93 -0.42 0.04 16 29 H 0.10 1.53 3.75 -51.93 -0.19 1.33 16 30 H 0.04 1.18 5.69 -51.92 -0.30 0.89 16 31 H -0.02 -0.44 8.12 -51.93 -0.42 -0.86 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.85 6.58 -51.93 -0.34 1.51 16 34 H 0.02 0.35 7.70 -51.93 -0.40 -0.05 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.27 5.37 -51.93 -0.28 0.99 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.93 5.50 -51.92 -0.29 0.64 16 42 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 43 H 0.05 0.60 7.99 -51.93 -0.42 0.18 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -29.40 343.22 -9.59 -39.00 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.09 Total: -0.29 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -0.21 Total: -22.74 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.05 Total: -37.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.40 Total: -0.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.40 -9.59 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.424 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds