Wall clock time and date at job start Tue Mar 31 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99907 * 2 1 4 4 C 1.53006 * 109.46821 * 76.47536 * 3 2 1 5 5 C 1.50703 * 109.46501 * 179.97438 * 4 3 2 6 6 C 1.33390 * 125.20180 * 90.00733 * 5 4 3 7 7 C 1.38421 * 114.91925 * 179.97438 * 6 5 4 8 8 C 1.33386 * 114.92206 * 359.97438 * 7 6 5 9 9 S 1.75879 * 109.59316 * 359.76334 * 8 7 6 10 10 C 1.46895 * 111.00151 * 236.04546 * 2 1 3 11 11 C 1.52998 * 109.47176 * 210.71168 * 10 2 1 12 12 C 1.52999 * 109.47345 * 294.43189 * 11 10 2 13 13 C 1.52997 * 109.46940 * 54.43238 * 11 10 2 14 14 C 1.53000 * 109.47425 * 174.42851 * 11 10 2 15 15 C 1.50691 * 109.47409 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00005 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00386 * 180.02562 * 15 14 11 18 18 N 1.31505 * 120.00158 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99496 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46789 * 90.00512 * 19 17 15 21 21 H 1.48501 * 109.47018 * 210.00623 * 19 17 15 22 22 H 1.48500 * 109.47328 * 330.00585 * 19 17 15 23 23 H 1.09004 * 109.46746 * 64.11964 * 1 2 3 24 24 H 1.09005 * 109.46985 * 184.11602 * 1 2 3 25 25 H 1.08994 * 109.47123 * 304.12124 * 1 2 3 26 26 H 1.08998 * 109.47041 * 316.47991 * 3 2 1 27 27 H 1.08997 * 109.47221 * 196.47388 * 3 2 1 28 28 H 1.08990 * 109.47124 * 60.00186 * 4 3 2 29 29 H 1.09004 * 109.46985 * 299.99582 * 4 3 2 30 30 H 1.07994 * 122.54316 * 359.94422 * 6 5 4 31 31 H 1.08005 * 122.54149 * 180.02562 * 7 6 5 32 32 H 1.08008 * 125.20632 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47072 * 330.71258 * 10 2 1 34 34 H 1.08994 * 109.47198 * 90.71131 * 10 2 1 35 35 H 1.09004 * 109.46846 * 70.58445 * 12 11 10 36 36 H 1.08994 * 109.47279 * 190.59001 * 12 11 10 37 37 H 1.08997 * 109.46966 * 310.58915 * 12 11 10 38 38 H 1.09006 * 109.47537 * 65.04976 * 13 11 10 39 39 H 1.09005 * 109.47215 * 185.05175 * 13 11 10 40 40 H 1.08998 * 109.47359 * 305.04762 * 13 11 10 41 41 H 1.08998 * 109.47182 * 300.00714 * 14 11 10 42 42 H 1.09005 * 109.46985 * 59.99998 * 14 11 10 43 43 H 0.97008 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8633 1.9684 1.4026 5 6 2.4039 3.3751 1.4026 6 6 1.6906 4.4731 1.1478 7 6 2.4033 5.6583 1.2061 8 6 3.6952 5.5229 1.5090 9 16 4.0700 3.8211 1.7472 10 6 1.9955 -0.7660 -1.1375 11 6 3.3361 -1.3947 -0.7523 12 6 4.3672 -0.2902 -0.5120 13 6 3.1644 -2.2189 0.5252 14 6 3.8172 -2.3039 -1.8849 15 6 5.1373 -2.9237 -1.5052 16 1 5.5882 -2.6920 -0.5517 17 6 5.7699 -3.7858 -2.3756 18 7 6.9216 -4.3271 -2.0440 19 14 4.9902 -4.1861 -4.0253 20 1 5.4577 -3.2112 -5.0433 21 1 5.3810 -5.5582 -4.4376 22 1 3.5121 -4.1071 -3.9064 23 1 -0.3633 0.4486 -0.9246 24 1 -0.3633 -1.0251 0.0738 25 1 -0.3633 0.5764 0.8507 26 1 1.4300 1.9777 -0.7076 27 1 3.0457 1.3575 -0.2914 28 1 2.4287 1.3623 2.1102 29 1 0.8130 1.9824 1.6940 30 1 0.6369 4.4399 0.9131 31 1 1.9477 6.6199 1.0214 32 1 4.4022 6.3345 1.5987 33 1 1.2890 -1.5518 -1.4045 34 1 2.1376 -0.1005 -1.9890 35 1 4.1227 0.2411 0.4078 36 1 5.3594 -0.7325 -0.4235 37 1 4.3538 0.4076 -1.3492 38 1 2.4985 -3.0592 0.3288 39 1 4.1355 -2.5930 0.8495 40 1 2.7370 -1.5917 1.3075 41 1 3.0826 -3.0908 -2.0561 42 1 3.9395 -1.7168 -2.7951 43 1 7.3665 -4.9339 -2.6563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093685654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:54 Heat of formation + Delta-G solvation = 25.877281 kcal Electronic energy + Delta-G solvation = -20229.317433 eV Core-core repulsion = 17400.951128 eV Total energy + Delta-G solvation = -2828.366305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.77555 -37.80849 -35.30896 -32.59396 -32.01218 -28.25431 -27.90994 -26.58857 -26.22794 -24.93428 -23.25772 -22.08605 -20.77438 -19.32406 -17.92471 -17.11366 -16.71621 -15.74485 -15.32127 -15.15918 -14.45976 -13.98818 -13.74732 -13.42508 -13.07855 -12.97332 -12.88084 -12.59898 -12.33866 -12.20498 -12.16778 -12.04656 -11.59218 -11.44083 -11.11867 -10.91960 -10.81661 -10.76291 -10.45565 -10.41366 -10.20822 -9.75731 -9.61251 -9.18448 -8.90071 -8.71146 -8.55695 -8.46436 -8.02842 -5.96758 -3.92403 0.90640 1.56243 1.94500 2.62989 3.34016 3.41727 3.45238 4.08653 4.51050 4.83972 4.93343 5.04637 5.23417 5.30256 5.36516 5.40348 5.43111 5.48924 5.60765 5.65581 5.79250 5.86961 5.94074 5.97055 6.06765 6.11040 6.18689 6.20909 6.27807 6.41309 6.51890 6.67837 6.74547 6.87401 7.14748 7.21460 7.22825 7.27653 7.38908 7.42395 7.55567 7.89473 8.63967 9.09835 9.66620 11.16413 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.003949 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.202266 B = 7089.234392 C = 7735.284061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.045 3.955 4 C -0.045 4.045 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.134 4.134 8 C -0.225 4.225 9 S 0.109 5.891 10 C 0.063 3.937 11 C -0.043 4.043 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.005 4.005 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.013 0.987 42 H 0.007 0.993 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 17.604 6.811 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.084 4.084 4 C -0.084 4.084 5 C -0.280 4.280 6 C -0.180 4.180 7 C -0.165 4.165 8 C -0.360 4.360 9 S 0.373 5.627 10 C -0.065 4.065 11 C -0.043 4.043 12 C -0.190 4.190 13 C -0.172 4.172 14 C -0.043 4.043 15 C -0.543 4.543 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.025 0.975 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.375 16.460 7.548 20.870 hybrid contribution -1.869 1.015 -2.187 3.051 sum -12.244 17.475 5.361 22.000 Atomic orbital electron populations 1.22441 0.88386 1.01920 0.99687 1.61893 1.06655 1.12637 1.44555 1.22519 1.02499 0.88430 0.94932 1.20136 1.01132 0.88453 0.98701 1.24599 0.96531 0.99626 1.07278 1.20091 1.01292 0.91286 1.05290 1.20131 0.93598 0.99330 1.03460 1.25627 1.00212 0.99653 1.10523 1.84559 1.09506 1.00125 1.68537 1.22367 0.97964 0.96105 0.90044 1.20360 0.91521 0.95208 0.97257 1.21962 1.00883 0.97392 0.98797 1.21575 1.01088 0.98151 0.96427 1.19645 0.97135 0.94230 0.93298 1.21139 1.03095 1.25465 1.04579 0.90380 1.25012 0.94715 0.95853 0.97998 1.69909 1.16124 1.31787 1.36758 0.86864 0.80366 0.77513 0.85004 1.20535 1.21592 1.19173 0.96253 0.91480 0.91904 0.95084 0.88576 0.89785 0.90354 0.84670 0.84663 0.82163 0.91688 0.94876 0.93798 0.91038 0.94608 0.94475 0.92552 0.93251 0.96837 0.97512 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.24 60.07 0.56 0.83 16 2 N -0.53 -7.43 3.43 -242.92 -0.83 -8.26 16 3 C 0.04 0.58 4.10 -3.82 -0.02 0.56 16 4 C -0.04 -0.50 5.83 -27.88 -0.16 -0.67 16 5 C -0.16 -1.82 5.76 -36.00 -0.21 -2.03 16 6 C -0.15 -1.53 10.05 -41.21 -0.41 -1.95 16 7 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 8 C -0.22 -2.18 11.23 29.04 0.33 -1.85 16 9 S 0.11 1.22 23.33 -107.50 -2.51 -1.29 16 10 C 0.06 1.03 4.23 -3.83 -0.02 1.01 16 11 C -0.04 -0.83 0.61 -154.51 -0.09 -0.93 16 12 C -0.13 -2.51 6.81 37.16 0.25 -2.26 16 13 C -0.12 -2.22 7.97 37.16 0.30 -1.92 16 14 C -0.01 -0.12 3.11 -27.89 -0.09 -0.21 16 15 C -0.50 -13.99 8.12 -34.44 -0.28 -14.27 16 16 H 0.08 2.31 5.99 -52.49 -0.31 2.00 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.89 13.96 55.43 0.77 -27.11 16 19 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.76 8.06 -51.93 -0.42 0.35 16 25 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 26 H 0.03 0.39 7.99 -51.93 -0.41 -0.02 16 27 H 0.10 1.39 4.28 -51.93 -0.22 1.16 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.79 6.90 -51.93 -0.36 0.43 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 34 H 0.03 0.54 7.79 -51.93 -0.40 0.14 16 35 H 0.04 0.74 6.39 -51.93 -0.33 0.40 16 36 H 0.07 1.54 6.34 -51.93 -0.33 1.21 16 37 H 0.03 0.64 7.54 -51.93 -0.39 0.25 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.20 6.79 -51.93 -0.35 0.85 16 40 H 0.05 0.86 7.29 -51.93 -0.38 0.48 16 41 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 42 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.81 343.20 -9.57 -39.38 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.14 Total: -1.49 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.36 Total: -23.59 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.06 Total: -35.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.81 -9.57 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093685654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.254 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds