Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99907 * 2 1 4 4 C 1.53006 * 109.46821 * 76.47536 * 3 2 1 5 5 C 1.50703 * 109.46501 * 179.97438 * 4 3 2 6 6 C 1.33390 * 125.20180 * 90.00733 * 5 4 3 7 7 C 1.38421 * 114.91925 * 179.97438 * 6 5 4 8 8 C 1.33386 * 114.92206 * 359.97438 * 7 6 5 9 9 S 1.75879 * 109.59316 * 359.76334 * 8 7 6 10 10 C 1.46895 * 111.00151 * 236.04546 * 2 1 3 11 11 C 1.52998 * 109.47176 * 210.71168 * 10 2 1 12 12 C 1.52999 * 109.47345 * 294.43189 * 11 10 2 13 13 C 1.52997 * 109.46940 * 54.43238 * 11 10 2 14 14 C 1.53000 * 109.47425 * 174.42851 * 11 10 2 15 15 C 1.50691 * 109.47409 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00005 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00386 * 180.02562 * 15 14 11 18 18 N 1.31505 * 120.00158 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99496 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46789 * 90.00512 * 19 17 15 21 21 H 1.48501 * 109.47018 * 210.00623 * 19 17 15 22 22 H 1.48500 * 109.47328 * 330.00585 * 19 17 15 23 23 H 1.09004 * 109.46746 * 64.11964 * 1 2 3 24 24 H 1.09005 * 109.46985 * 184.11602 * 1 2 3 25 25 H 1.08994 * 109.47123 * 304.12124 * 1 2 3 26 26 H 1.08998 * 109.47041 * 316.47991 * 3 2 1 27 27 H 1.08997 * 109.47221 * 196.47388 * 3 2 1 28 28 H 1.08990 * 109.47124 * 60.00186 * 4 3 2 29 29 H 1.09004 * 109.46985 * 299.99582 * 4 3 2 30 30 H 1.07994 * 122.54316 * 359.94422 * 6 5 4 31 31 H 1.08005 * 122.54149 * 180.02562 * 7 6 5 32 32 H 1.08008 * 125.20632 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47072 * 330.71258 * 10 2 1 34 34 H 1.08994 * 109.47198 * 90.71131 * 10 2 1 35 35 H 1.09004 * 109.46846 * 70.58445 * 12 11 10 36 36 H 1.08994 * 109.47279 * 190.59001 * 12 11 10 37 37 H 1.08997 * 109.46966 * 310.58915 * 12 11 10 38 38 H 1.09006 * 109.47537 * 65.04976 * 13 11 10 39 39 H 1.09005 * 109.47215 * 185.05175 * 13 11 10 40 40 H 1.08998 * 109.47359 * 305.04762 * 13 11 10 41 41 H 1.08998 * 109.47182 * 300.00714 * 14 11 10 42 42 H 1.09005 * 109.46985 * 59.99998 * 14 11 10 43 43 H 0.97008 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8633 1.9684 1.4026 5 6 2.4039 3.3751 1.4026 6 6 1.6906 4.4731 1.1478 7 6 2.4033 5.6583 1.2061 8 6 3.6952 5.5229 1.5090 9 16 4.0700 3.8211 1.7472 10 6 1.9955 -0.7660 -1.1375 11 6 3.3361 -1.3947 -0.7523 12 6 4.3672 -0.2902 -0.5120 13 6 3.1644 -2.2189 0.5252 14 6 3.8172 -2.3039 -1.8849 15 6 5.1373 -2.9237 -1.5052 16 1 5.5882 -2.6920 -0.5517 17 6 5.7699 -3.7858 -2.3756 18 7 6.9216 -4.3271 -2.0440 19 14 4.9902 -4.1861 -4.0253 20 1 5.4577 -3.2112 -5.0433 21 1 5.3810 -5.5582 -4.4376 22 1 3.5121 -4.1071 -3.9064 23 1 -0.3633 0.4486 -0.9246 24 1 -0.3633 -1.0251 0.0738 25 1 -0.3633 0.5764 0.8507 26 1 1.4300 1.9777 -0.7076 27 1 3.0457 1.3575 -0.2914 28 1 2.4287 1.3623 2.1102 29 1 0.8130 1.9824 1.6940 30 1 0.6369 4.4399 0.9131 31 1 1.9477 6.6199 1.0214 32 1 4.4022 6.3345 1.5987 33 1 1.2890 -1.5518 -1.4045 34 1 2.1376 -0.1005 -1.9890 35 1 4.1227 0.2411 0.4078 36 1 5.3594 -0.7325 -0.4235 37 1 4.3538 0.4076 -1.3492 38 1 2.4985 -3.0592 0.3288 39 1 4.1355 -2.5930 0.8495 40 1 2.7370 -1.5917 1.3075 41 1 3.0826 -3.0908 -2.0561 42 1 3.9395 -1.7168 -2.7951 43 1 7.3665 -4.9339 -2.6563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093685654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = 10.154818 kcal Electronic energy + Delta-G solvation = -20229.999210 eV Core-core repulsion = 17400.951128 eV Total energy + Delta-G solvation = -2829.048082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97628 -38.69920 -36.72210 -34.35644 -33.29275 -29.84811 -29.14526 -27.98380 -27.58143 -26.02110 -24.61460 -23.41933 -21.88153 -20.09375 -19.49442 -18.84432 -17.95530 -16.78467 -16.37823 -16.20326 -16.18734 -15.38060 -15.11840 -14.85597 -14.42881 -14.15789 -13.94961 -13.90265 -13.67988 -13.48814 -13.15656 -12.99882 -12.95290 -12.80353 -12.49799 -12.39031 -12.26648 -12.19610 -11.99228 -11.72086 -11.68484 -11.43688 -11.28013 -10.90002 -10.75674 -10.68263 -9.52096 -9.38747 -9.12062 -8.20218 -6.20231 0.13179 0.77278 1.17694 1.36159 1.37904 1.49083 1.88826 2.40572 3.03125 3.14794 3.96287 4.09222 4.12411 4.17006 4.28663 4.36671 4.40397 4.55106 4.58622 4.66628 4.71678 4.78316 4.79599 4.86836 4.92753 4.99667 5.03710 5.06208 5.12787 5.18607 5.24750 5.30973 5.41166 5.43307 5.47734 5.58127 5.65764 5.66887 5.78076 5.85222 6.18274 6.28243 6.45057 6.87054 7.41956 8.96160 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.003949 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.202266 B = 7089.234392 C = 7735.284061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.049 3.951 4 C -0.035 4.035 5 C -0.176 4.176 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.221 4.221 9 S 0.062 5.938 10 C 0.073 3.927 11 C -0.043 4.043 12 C -0.121 4.121 13 C -0.105 4.105 14 C -0.003 4.003 15 C -0.502 4.502 16 H 0.043 0.957 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.248 1.248 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.014 0.986 42 H 0.009 0.991 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 19.438 6.136 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.080 4.080 4 C -0.075 4.075 5 C -0.294 4.294 6 C -0.176 4.176 7 C -0.170 4.170 8 C -0.356 4.356 9 S 0.325 5.675 10 C -0.055 4.055 11 C -0.044 4.044 12 C -0.178 4.178 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.540 4.540 16 H 0.061 0.939 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.172 1.172 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.032 0.968 42 H 0.027 0.973 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.333 18.312 6.884 23.675 hybrid contribution -0.938 0.532 -1.879 2.167 sum -14.271 18.844 5.004 24.162 Atomic orbital electron populations 1.22499 0.86371 1.02553 1.00912 1.61808 1.08436 1.13047 1.43207 1.22451 1.01329 0.88047 0.96127 1.20020 1.01908 0.88285 0.97272 1.24604 0.96131 0.99911 1.08751 1.20401 1.02172 0.91115 1.03935 1.20465 0.93471 1.00257 1.02814 1.25905 1.00896 0.98802 1.09984 1.84730 1.10822 1.02371 1.69594 1.22100 0.95973 0.96514 0.90915 1.20309 0.93625 0.94765 0.95715 1.21835 0.98649 0.97261 1.00093 1.21466 0.99273 0.98408 0.97063 1.19604 0.94810 0.94782 0.94890 1.21423 1.04599 1.24934 1.03071 0.93914 1.25922 0.95255 0.96047 1.02258 1.70068 1.18034 1.33156 1.38466 0.85802 0.80356 0.77293 0.80030 1.19676 1.21447 1.17180 0.95524 0.91338 0.89990 0.94362 0.90510 0.90994 0.88684 0.82837 0.82151 0.80199 0.91200 0.94711 0.91927 0.94814 0.93909 0.94520 0.95831 0.91175 0.96752 0.97260 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.24 127.69 1.18 1.66 16 2 N -0.54 -13.66 3.43 -922.45 -3.16 -16.82 16 3 C 0.05 1.15 4.10 86.30 0.35 1.50 16 4 C -0.04 -0.72 5.83 29.85 0.17 -0.55 16 5 C -0.18 -3.64 5.76 24.59 0.14 -3.50 16 6 C -0.15 -2.58 10.05 21.22 0.21 -2.37 16 7 C -0.14 -2.27 10.18 21.21 0.22 -2.05 16 8 C -0.22 -3.86 11.23 66.72 0.75 -3.11 16 9 S 0.06 1.34 23.33 -56.49 -1.32 0.03 16 10 C 0.07 2.24 4.23 86.30 0.37 2.60 16 11 C -0.04 -1.67 0.61 -52.18 -0.03 -1.70 16 12 C -0.12 -4.62 6.81 71.98 0.49 -4.13 16 13 C -0.10 -4.03 7.97 71.98 0.57 -3.46 16 14 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 15 C -0.50 -28.64 8.12 25.60 0.21 -28.43 16 16 H 0.04 2.68 5.99 -2.91 -0.02 2.67 16 17 C 0.00 0.04 5.47 84.66 0.46 0.51 16 18 N -0.96 -60.74 13.96 21.45 0.30 -60.44 16 19 Si 0.94 45.09 27.47 68.60 1.88 46.98 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 23 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.07 1.33 8.06 -2.38 -0.02 1.31 16 25 H 0.08 1.30 6.80 -2.39 -0.02 1.28 16 26 H 0.04 0.85 7.99 -2.39 -0.02 0.83 16 27 H 0.08 2.11 4.28 -2.39 -0.01 2.10 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 1.61 6.90 -2.38 -0.02 1.59 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.07 2.08 7.72 -2.39 -0.02 2.06 16 34 H 0.03 1.06 7.79 -2.39 -0.02 1.04 16 35 H 0.06 2.11 6.39 -2.39 -0.02 2.10 16 36 H 0.03 1.51 6.34 -2.39 -0.02 1.49 16 37 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.02 1.02 6.79 -2.38 -0.02 1.01 16 40 H 0.07 2.38 7.29 -2.39 -0.02 2.36 16 41 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 42 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16 43 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -65.58 343.20 3.81 -61.77 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.91 Total: 11.57 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 5.19 Total: -43.08 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.86 Total: -77.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.32 Total: 0.03 kcal Total: -65.58 3.81 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093685654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.925 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds