Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36059 * 117.00084 * 2 1 4 4 C 1.38638 * 119.98793 * 0.02562 * 3 2 1 5 5 C 1.38140 * 120.04428 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.01997 * 359.97438 * 5 4 3 7 7 N 1.39931 * 120.00971 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99643 * 185.76524 * 7 6 5 9 9 C 1.52997 * 109.47345 * 270.00186 * 8 7 6 10 10 C 1.50696 * 109.47324 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99932 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00236 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00055 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46907 * 60.00542 * 14 12 10 16 16 H 1.48498 * 109.47045 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47082 * 300.00473 * 14 12 10 18 18 C 1.46499 * 120.00308 * 5.76867 * 7 6 5 19 19 C 1.52999 * 109.46955 * 235.35194 * 18 7 6 20 20 C 1.53000 * 109.46783 * 115.35391 * 18 7 6 21 21 C 1.38841 * 119.97566 * 0.28514 * 6 5 4 22 22 C 1.38296 * 119.95703 * 359.41651 * 21 6 5 23 23 F 1.35103 * 120.01021 * 180.27802 * 22 21 6 24 24 H 1.09001 * 109.47330 * 59.99619 * 1 2 3 25 25 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46985 * 299.99909 * 1 2 3 27 27 H 1.08001 * 119.97710 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.99278 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47335 * 30.00355 * 8 7 6 30 30 H 1.09003 * 109.47040 * 150.00483 * 8 7 6 31 31 H 1.09000 * 109.47042 * 300.00349 * 9 8 7 32 32 H 1.09003 * 109.46809 * 60.00156 * 9 8 7 33 33 H 0.96998 * 120.00297 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.46574 * 355.35461 * 18 7 6 35 35 H 1.08993 * 109.46980 * 299.99785 * 19 18 7 36 36 H 1.08999 * 109.46522 * 179.97438 * 19 18 7 37 37 H 1.08998 * 109.46674 * 60.00388 * 19 18 7 38 38 H 1.09008 * 109.46771 * 180.02562 * 20 18 7 39 39 H 1.09006 * 109.46960 * 299.99653 * 20 18 7 40 40 H 1.08994 * 109.47244 * 60.00160 * 20 18 7 41 41 H 1.08003 * 120.02212 * 179.70096 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9173 3.6063 0.0000 6 6 3.3040 3.6808 -0.0005 7 7 3.9378 4.9283 -0.0005 8 6 5.3950 5.0095 -0.1286 9 6 6.0321 4.9718 1.2620 10 6 7.5310 5.0547 1.1302 11 1 7.9839 5.1275 0.1525 12 6 8.3241 5.0387 2.2579 13 7 7.7726 4.9506 3.4486 14 14 10.1822 5.1407 2.0946 15 1 10.5504 6.4088 1.4151 16 1 10.8004 5.1043 3.4443 17 1 10.6727 3.9899 1.2947 18 6 3.1444 6.1532 0.1275 19 6 3.4468 7.0822 -1.0499 20 6 3.5018 6.8576 1.4379 21 6 4.0612 2.5171 -0.0065 22 6 3.4336 1.2847 0.0003 23 9 4.1694 0.1517 0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3177 0.0014 28 1 1.3281 4.5114 0.0000 29 1 5.7557 4.1655 -0.7165 30 1 5.6647 5.9409 -0.6266 31 1 5.6714 5.8158 1.8499 32 1 5.7625 4.0404 1.7600 33 1 8.3305 4.9390 4.2419 34 1 2.0841 5.9007 0.1282 35 1 4.5071 7.3345 -1.0505 36 1 2.8561 7.9932 -0.9548 37 1 3.1922 6.5802 -1.9833 38 1 2.9111 7.7687 1.5334 39 1 3.2863 6.1957 2.2767 40 1 4.5621 7.1100 1.4372 41 1 5.1397 2.5742 -0.0118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101567486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -54.574659 kcal Electronic energy + Delta-G solvation = -22425.390951 eV Core-core repulsion = 19027.322813 eV Total energy + Delta-G solvation = -3398.068139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.40565 -39.87251 -38.49390 -36.07983 -33.41240 -32.08083 -30.53526 -29.90765 -28.13150 -27.02417 -26.63092 -24.66110 -22.68002 -21.86770 -20.96055 -19.34381 -18.29980 -17.04741 -16.65051 -16.19775 -15.87065 -15.70535 -14.78511 -14.58903 -14.45468 -14.43195 -14.03104 -13.69354 -13.56450 -12.92008 -12.52649 -12.40211 -12.33292 -12.19641 -11.90861 -11.75460 -11.54182 -11.44747 -11.12812 -11.01738 -10.89526 -10.86352 -10.67890 -10.27845 -9.87381 -9.79239 -9.14590 -8.88610 -8.47631 -8.35293 -6.65253 -6.02684 -4.06721 1.44578 1.77795 3.31581 3.35484 3.36845 3.39118 3.55491 3.95847 4.43845 4.58372 4.84445 5.03799 5.08786 5.13746 5.27379 5.33057 5.37016 5.41721 5.50060 5.52524 5.69525 5.84560 5.85935 5.97029 6.07299 6.11099 6.17007 6.28448 6.33199 6.41435 6.51164 6.53826 6.69606 6.83240 6.88594 7.51110 7.58615 7.67474 7.76629 7.98732 8.04246 8.36384 9.00405 9.57671 11.07764 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.005079 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.074188 B = 5511.482805 C = 6768.870972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C 0.016 3.984 4 C -0.131 4.131 5 C -0.186 4.186 6 C 0.232 3.768 7 N -0.612 5.612 8 C 0.120 3.880 9 C 0.004 3.996 10 C -0.526 4.526 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.144 3.856 19 C -0.163 4.163 20 C -0.168 4.168 21 C -0.194 4.194 22 C 0.122 3.878 23 F -0.135 7.135 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -1.366 -7.676 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C -0.031 4.031 4 C -0.150 4.150 5 C -0.209 4.209 6 C 0.127 3.873 7 N -0.320 5.320 8 C -0.001 4.001 9 C -0.034 4.034 10 C -0.565 4.565 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.040 3.960 19 C -0.221 4.221 20 C -0.226 4.226 21 C -0.217 4.217 22 C 0.102 3.898 23 F -0.114 7.114 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.221 -1.406 -7.492 17.023 hybrid contribution 0.995 0.005 0.151 1.007 sum -14.226 -1.400 -7.341 16.069 Atomic orbital electron populations 1.22945 0.79175 1.03354 1.00911 1.86091 1.20608 1.26190 1.90344 1.18605 0.90501 0.85252 1.08709 1.20715 0.99253 0.91042 1.03997 1.20492 0.92617 0.97430 1.10381 1.17489 0.90877 0.85724 0.93195 1.47068 1.06728 1.01344 1.76906 1.21854 0.76378 1.00948 1.00953 1.19634 0.94716 0.98276 0.90801 1.21091 0.91517 1.51232 0.92639 0.92738 1.24973 0.98603 0.95126 0.95342 1.69956 1.35422 1.50032 0.97557 0.86677 0.85648 0.78638 0.77157 1.20262 1.21292 1.20178 1.20963 0.95311 0.84658 0.95057 1.22182 1.02837 0.99051 0.98057 1.22352 1.03503 0.99645 0.97074 1.20650 1.01616 0.89041 1.10434 1.16659 0.85623 0.82349 1.05180 1.91472 1.76870 1.49017 1.94003 0.93089 0.88735 0.93017 0.85240 0.85398 0.92045 0.91634 0.95303 0.96263 0.92901 0.90059 0.91642 0.92034 0.92652 0.92746 0.92267 0.90530 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.73 10.36 -19.93 -0.21 -4.94 16 3 C 0.02 0.25 6.69 -39.20 -0.26 -0.01 16 4 C -0.13 -1.77 9.03 -39.47 -0.36 -2.12 16 5 C -0.19 -2.66 9.31 -39.39 -0.37 -3.03 16 6 C 0.23 3.93 6.54 -83.70 -0.55 3.38 16 7 N -0.61 -10.36 2.54 -164.14 -0.42 -10.78 16 8 C 0.12 2.35 4.52 -4.04 -0.02 2.33 16 9 C 0.00 0.09 5.00 -27.89 -0.14 -0.05 16 10 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 C 0.14 2.02 3.20 -67.93 -0.22 1.81 16 19 C -0.16 -2.00 9.08 37.16 0.34 -1.67 16 20 C -0.17 -2.54 8.42 37.16 0.31 -2.23 16 21 C -0.19 -3.56 9.08 -39.34 -0.36 -3.91 16 22 C 0.12 2.20 7.31 -39.32 -0.29 1.92 16 23 F -0.14 -2.57 17.11 2.25 0.04 -2.53 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.13 1.33 6.29 -52.49 -0.33 1.00 16 28 H 0.13 1.53 5.74 -52.48 -0.30 1.23 16 29 H 0.06 1.21 6.44 -51.93 -0.33 0.87 16 30 H 0.07 1.23 6.19 -51.93 -0.32 0.90 16 31 H 0.03 0.74 5.42 -51.93 -0.28 0.46 16 32 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 0.99 5.31 -51.93 -0.28 0.72 16 35 H 0.06 0.89 6.53 -51.93 -0.34 0.55 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.36 6.01 -51.93 -0.31 1.05 16 41 H 0.15 2.94 6.20 -52.48 -0.33 2.61 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -30.56 330.95 -6.89 -37.45 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.69 Total: 0.42 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.32 Total: -15.30 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.32 Total: -36.44 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.21 Total: -4.94 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.56 -6.89 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101567486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.126 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds