Wall clock time and date at job start Tue Mar 31 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36059 * 117.00084 * 2 1 4 4 C 1.38638 * 119.98793 * 0.02562 * 3 2 1 5 5 C 1.38140 * 120.04428 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.01997 * 359.97438 * 5 4 3 7 7 N 1.39931 * 120.00971 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99643 * 185.76524 * 7 6 5 9 9 C 1.52997 * 109.47345 * 270.00186 * 8 7 6 10 10 C 1.50696 * 109.47324 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99932 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00236 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00055 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46907 * 60.00542 * 14 12 10 16 16 H 1.48498 * 109.47045 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47082 * 300.00473 * 14 12 10 18 18 C 1.46499 * 120.00308 * 5.76867 * 7 6 5 19 19 C 1.52999 * 109.46955 * 235.35194 * 18 7 6 20 20 C 1.53000 * 109.46783 * 115.35391 * 18 7 6 21 21 C 1.38841 * 119.97566 * 0.28514 * 6 5 4 22 22 C 1.38296 * 119.95703 * 359.41651 * 21 6 5 23 23 F 1.35103 * 120.01021 * 180.27802 * 22 21 6 24 24 H 1.09001 * 109.47330 * 59.99619 * 1 2 3 25 25 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46985 * 299.99909 * 1 2 3 27 27 H 1.08001 * 119.97710 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.99278 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47335 * 30.00355 * 8 7 6 30 30 H 1.09003 * 109.47040 * 150.00483 * 8 7 6 31 31 H 1.09000 * 109.47042 * 300.00349 * 9 8 7 32 32 H 1.09003 * 109.46809 * 60.00156 * 9 8 7 33 33 H 0.96998 * 120.00297 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.46574 * 355.35461 * 18 7 6 35 35 H 1.08993 * 109.46980 * 299.99785 * 19 18 7 36 36 H 1.08999 * 109.46522 * 179.97438 * 19 18 7 37 37 H 1.08998 * 109.46674 * 60.00388 * 19 18 7 38 38 H 1.09008 * 109.46771 * 180.02562 * 20 18 7 39 39 H 1.09006 * 109.46960 * 299.99653 * 20 18 7 40 40 H 1.08994 * 109.47244 * 60.00160 * 20 18 7 41 41 H 1.08003 * 120.02212 * 179.70096 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9173 3.6063 0.0000 6 6 3.3040 3.6808 -0.0005 7 7 3.9378 4.9283 -0.0005 8 6 5.3950 5.0095 -0.1286 9 6 6.0321 4.9718 1.2620 10 6 7.5310 5.0547 1.1302 11 1 7.9839 5.1275 0.1525 12 6 8.3241 5.0387 2.2579 13 7 7.7726 4.9506 3.4486 14 14 10.1822 5.1407 2.0946 15 1 10.5504 6.4088 1.4151 16 1 10.8004 5.1043 3.4443 17 1 10.6727 3.9899 1.2947 18 6 3.1444 6.1532 0.1275 19 6 3.4468 7.0822 -1.0499 20 6 3.5018 6.8576 1.4379 21 6 4.0612 2.5171 -0.0065 22 6 3.4336 1.2847 0.0003 23 9 4.1694 0.1517 0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3177 0.0014 28 1 1.3281 4.5114 0.0000 29 1 5.7557 4.1655 -0.7165 30 1 5.6647 5.9409 -0.6266 31 1 5.6714 5.8158 1.8499 32 1 5.7625 4.0404 1.7600 33 1 8.3305 4.9390 4.2419 34 1 2.0841 5.9007 0.1282 35 1 4.5071 7.3345 -1.0505 36 1 2.8561 7.9932 -0.9548 37 1 3.1922 6.5802 -1.9833 38 1 2.9111 7.7687 1.5334 39 1 3.2863 6.1957 2.2767 40 1 4.5621 7.1100 1.4372 41 1 5.1397 2.5742 -0.0118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101567486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:46 Heat of formation + Delta-G solvation = -71.855137 kcal Electronic energy + Delta-G solvation = -22426.140289 eV Core-core repulsion = 19027.322813 eV Total energy + Delta-G solvation = -3398.817476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.81886 -41.07592 -39.68648 -37.30777 -35.35156 -33.52269 -31.95505 -31.39553 -29.31374 -28.13059 -27.83639 -26.35530 -24.03767 -23.26289 -22.48532 -20.65160 -19.50845 -18.59501 -18.10966 -17.77019 -17.04256 -16.98681 -16.56709 -15.96223 -15.80801 -15.62995 -15.24550 -15.03247 -14.72111 -14.42616 -14.20828 -13.73917 -13.68327 -13.41186 -13.26021 -13.16157 -12.82232 -12.67897 -12.60401 -12.55879 -12.33404 -12.11282 -11.98642 -11.65496 -11.61053 -11.57106 -11.07787 -10.51787 -10.16788 -9.79803 -8.21811 -7.92816 -6.30946 0.18680 0.53251 1.38693 1.41596 1.48972 2.17363 2.40264 2.45632 2.71118 3.13920 3.33800 3.74315 3.92265 4.07092 4.23429 4.26163 4.30939 4.42599 4.49118 4.52383 4.56177 4.70563 4.77311 4.77892 4.82220 4.85645 4.95139 5.02472 5.07335 5.10697 5.24217 5.26007 5.36304 5.44676 5.52458 5.62087 5.69619 5.85462 6.15142 6.43745 6.49983 6.69802 6.87695 7.38066 8.91275 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.005079 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.074188 B = 5511.482805 C = 6768.870972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.020 3.980 4 C -0.117 4.117 5 C -0.168 4.168 6 C 0.213 3.787 7 N -0.617 5.617 8 C 0.139 3.861 9 C 0.015 3.985 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.140 3.860 19 C -0.157 4.157 20 C -0.163 4.163 21 C -0.217 4.217 22 C 0.088 3.912 23 F -0.152 7.152 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.175 0.825 28 H 0.163 0.837 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.013 0.987 32 H -0.022 1.022 33 H 0.262 0.738 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.041 0.959 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 -0.335 -8.950 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C -0.027 4.027 4 C -0.135 4.135 5 C -0.191 4.191 6 C 0.109 3.891 7 N -0.326 5.326 8 C 0.016 3.984 9 C -0.023 4.023 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.785 3.215 15 H -0.188 1.188 16 H -0.211 1.211 17 H -0.196 1.196 18 C 0.038 3.962 19 C -0.214 4.214 20 C -0.221 4.221 21 C -0.241 4.241 22 C 0.068 3.932 23 F -0.130 7.130 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.192 0.808 28 H 0.180 0.820 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.031 0.969 32 H -0.003 1.003 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.806 -0.378 -8.785 19.858 hybrid contribution 1.641 -0.383 0.573 1.780 sum -16.164 -0.761 -8.211 18.146 Atomic orbital electron populations 1.23352 0.76184 1.05457 1.02529 1.86075 1.23711 1.25821 1.90105 1.18733 0.89726 0.86725 1.07492 1.21172 1.01199 0.89544 1.01628 1.20874 0.91246 0.99171 1.07764 1.17723 0.92196 0.85005 0.94147 1.47020 1.05569 1.02540 1.77466 1.21366 0.78471 1.01076 0.97482 1.19463 0.94150 0.95309 0.93357 1.21583 0.93130 1.50456 0.92981 0.92062 1.25892 1.03749 0.94754 0.94963 1.70102 1.37237 1.51381 0.98359 0.85580 0.79516 0.79203 0.77239 1.18766 1.21071 1.19593 1.21248 0.96294 0.83645 0.95030 1.22130 1.02141 0.99788 0.97385 1.22293 1.01803 1.00803 0.97167 1.20513 1.00468 0.90443 1.12632 1.16967 0.87030 0.81735 1.07506 1.91411 1.77517 1.49727 1.94388 0.91080 0.86717 0.91526 0.80823 0.81987 0.92798 0.90540 0.96860 1.00315 0.92946 0.87062 0.93536 0.89201 0.91869 0.89372 0.94531 0.93986 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.63 10.36 -94.22 -0.98 -10.61 16 3 C 0.02 0.62 6.69 22.52 0.15 0.77 16 4 C -0.12 -2.74 9.03 22.34 0.20 -2.54 16 5 C -0.17 -4.28 9.31 22.40 0.21 -4.07 16 6 C 0.21 7.18 6.54 38.14 0.25 7.43 16 7 N -0.62 -20.88 2.54 -673.22 -1.71 -22.59 16 8 C 0.14 5.66 4.52 86.38 0.39 6.05 16 9 C 0.02 0.80 5.00 29.85 0.15 0.95 16 10 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 14 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.14 3.65 3.20 44.99 0.14 3.79 16 19 C -0.16 -3.42 9.08 71.98 0.65 -2.76 16 20 C -0.16 -4.81 8.42 71.98 0.61 -4.20 16 21 C -0.22 -8.43 9.08 22.43 0.20 -8.23 16 22 C 0.09 3.30 7.31 22.44 0.16 3.46 16 23 F -0.15 -6.16 17.11 44.97 0.77 -5.39 16 24 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.07 0.85 7.66 -2.38 -0.02 0.83 16 27 H 0.17 2.54 6.29 -2.91 -0.02 2.52 16 28 H 0.16 2.99 5.74 -2.91 -0.02 2.97 16 29 H 0.05 2.25 6.44 -2.39 -0.02 2.24 16 30 H 0.08 2.93 6.19 -2.39 -0.01 2.91 16 31 H 0.01 0.72 5.42 -2.39 -0.01 0.71 16 32 H -0.02 -1.29 8.02 -2.39 -0.02 -1.31 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.11 2.23 5.31 -2.39 -0.01 2.22 16 35 H 0.05 1.19 6.53 -2.39 -0.02 1.18 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.04 1.21 8.14 -2.38 -0.02 1.20 16 40 H 0.04 1.53 6.01 -2.39 -0.01 1.51 16 41 H 0.12 5.21 6.20 -2.91 -0.02 5.19 16 Total: -1.00 -71.07 330.95 6.36 -64.71 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.04 Total: 11.89 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.93 Total: -27.69 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.43 Total: -79.62 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.98 Total: -10.61 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.77 Total: -5.39 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.07 6.36 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101567486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.148 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds