Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00075 * 2 1 4 4 C 1.53000 * 109.47364 * 66.03783 * 3 2 1 5 5 C 1.53000 * 109.46791 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46937 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00500 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46819 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47153 * 119.99715 * 10 8 6 13 13 H 1.48495 * 109.47361 * 239.99892 * 10 8 6 14 14 C 1.46891 * 111.00283 * 236.03991 * 2 1 3 15 15 C 1.53001 * 109.47149 * 199.81085 * 14 2 1 16 16 O 1.42904 * 109.46835 * 65.10449 * 15 14 2 17 17 C 1.35954 * 116.99611 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.06687 * 359.97438 * 17 16 15 19 19 C 1.38185 * 119.97146 * 180.02562 * 18 17 16 20 20 C 1.38261 * 120.09446 * 0.02562 * 19 18 17 21 21 C 1.38261 * 120.12426 * 359.97438 * 20 19 18 22 22 C 1.38323 * 120.03172 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.04780 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.47361 * 177.98380 * 1 2 3 25 25 H 1.08998 * 109.47614 * 297.99234 * 1 2 3 26 26 H 1.09002 * 109.46701 * 57.98716 * 1 2 3 27 27 H 1.08998 * 109.47038 * 186.04555 * 3 2 1 28 28 H 1.09006 * 109.46936 * 306.04143 * 3 2 1 29 29 H 1.08997 * 109.47216 * 300.00127 * 4 3 2 30 30 H 1.08993 * 109.46802 * 60.00620 * 4 3 2 31 31 H 1.08997 * 109.47313 * 300.00029 * 5 4 3 32 32 H 1.09006 * 109.47253 * 60.00517 * 5 4 3 33 33 H 0.96996 * 119.99943 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47535 * 79.81189 * 14 2 1 35 35 H 1.08999 * 109.47142 * 319.81320 * 14 2 1 36 36 H 1.08993 * 109.47162 * 305.10575 * 15 14 2 37 37 H 1.09000 * 109.47123 * 185.09737 * 15 14 2 38 38 H 1.07997 * 120.01365 * 0.04506 * 18 17 16 39 39 H 1.07993 * 119.94795 * 180.27543 * 19 18 17 40 40 H 1.07994 * 119.93781 * 179.97438 * 20 19 18 41 41 H 1.07999 * 119.97773 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1792 3.4861 1.3177 6 6 1.8211 4.1618 2.6164 7 1 1.2594 3.6257 3.3671 8 6 2.2106 5.4642 2.8462 9 7 2.8951 6.1169 1.9322 10 14 1.7661 6.3020 4.4555 11 1 0.9998 5.3591 5.3093 12 1 3.0077 6.7101 5.1606 13 1 0.9381 7.5026 4.1764 14 6 1.9955 -0.7660 -1.1374 15 6 3.4453 -1.1658 -0.8558 16 8 3.4843 -2.0655 0.2538 17 6 4.7069 -2.5206 0.6366 18 6 5.8445 -2.1102 -0.0416 19 6 7.0861 -2.5744 0.3489 20 6 7.1959 -3.4480 1.4148 21 6 6.0641 -3.8598 2.0939 22 6 4.8187 -3.3984 1.7074 23 9 3.7126 -3.8001 2.3711 24 1 -0.3634 -1.0270 -0.0362 25 1 -0.3634 0.4823 0.9074 26 1 -0.3633 0.5448 -0.8714 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8310 29 1 0.5471 2.0846 1.4263 30 1 2.0657 1.5018 2.1491 31 1 3.2635 3.4595 1.2094 32 1 1.7445 4.0418 0.4868 33 1 3.1694 7.0331 2.0941 34 1 1.9561 -0.1530 -2.0379 35 1 1.3928 -1.6627 -1.2817 36 1 4.0289 -0.2754 -0.6222 37 1 3.8647 -1.6549 -1.7350 38 1 5.7603 -1.4279 -0.8745 39 1 7.9723 -2.2510 -0.1768 40 1 8.1674 -3.8095 1.7176 41 1 6.1526 -4.5420 2.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102396581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -63.714363 kcal Electronic energy + Delta-G solvation = -21509.840914 eV Core-core repulsion = 18111.376449 eV Total energy + Delta-G solvation = -3398.464466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.74510 -40.08380 -38.05905 -36.98210 -33.69401 -31.65918 -30.84518 -30.51217 -29.10034 -27.04408 -25.12680 -23.68700 -22.57619 -22.34829 -20.74238 -19.86942 -18.54169 -17.15524 -16.65595 -16.44192 -16.25718 -15.52396 -15.25747 -14.85950 -14.78330 -14.48389 -14.36708 -14.15280 -13.67044 -13.33290 -12.89001 -12.52312 -12.35195 -12.22395 -12.00459 -11.74194 -11.54567 -11.46138 -11.29678 -11.02605 -10.91958 -10.76728 -10.46157 -10.42872 -9.58333 -9.30396 -9.09539 -9.02001 -8.32066 -8.26272 -8.06130 -5.97402 -3.98959 0.97858 1.14366 3.02738 3.33295 3.40586 3.44618 3.45786 4.08093 4.15929 4.49421 4.55115 4.65872 4.88716 4.94952 5.04934 5.07638 5.18789 5.27920 5.38613 5.41037 5.55041 5.59402 5.69063 5.82522 5.83775 5.90785 5.98217 6.02720 6.15662 6.21691 6.33582 6.52638 6.72257 6.79715 7.13850 7.25377 7.34373 7.41049 7.71425 7.85997 8.03314 8.47351 9.08404 9.65055 11.14181 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003600 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.090482 B = 7776.501483 C = 8556.306972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.053 3.947 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.054 3.946 15 C 0.064 3.936 16 O -0.287 6.287 17 C 0.107 3.893 18 C -0.187 4.187 19 C -0.089 4.089 20 C -0.137 4.137 21 C -0.118 4.118 22 C 0.066 3.934 23 F -0.132 7.132 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -20.068 -7.489 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.262 5.262 3 C -0.074 4.074 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.074 4.074 15 C -0.012 4.012 16 O -0.200 6.200 17 C 0.060 3.940 18 C -0.206 4.206 19 C -0.108 4.108 20 C -0.155 4.155 21 C -0.137 4.137 22 C 0.046 3.954 23 F -0.111 7.111 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.838 -20.181 -6.996 22.143 hybrid contribution -0.457 1.108 0.059 1.200 sum 5.380 -19.073 -6.937 20.997 Atomic orbital electron populations 1.22384 0.87278 1.01106 1.01345 1.62017 1.07943 1.15036 1.41191 1.22390 0.99388 0.86207 0.99376 1.21639 1.00146 0.98091 0.94383 1.19078 0.96150 0.89350 0.96991 1.21300 1.34605 0.97529 1.02031 0.92608 1.25025 0.95248 0.97510 0.96737 1.69978 1.38578 1.11207 1.33961 0.86547 0.78186 0.79453 0.83913 1.19688 1.21023 1.21057 1.22121 0.93967 0.98563 0.92769 1.22984 0.98782 0.92317 0.87077 1.86260 1.24514 1.60051 1.49129 1.19117 0.86143 0.94612 0.94150 1.21209 0.91919 1.04465 1.02961 1.21011 0.96983 0.96233 0.96533 1.20885 0.98122 0.99666 0.96864 1.21012 0.90350 1.01161 1.01141 1.17021 0.83724 1.00609 0.94084 1.91510 1.51205 1.89155 1.79183 0.92019 0.90536 0.95976 0.91550 0.95246 0.93354 0.92575 0.96724 0.96866 0.93141 0.92471 0.90081 0.91273 0.91830 0.84578 0.85199 0.85062 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.25 60.07 0.56 0.93 16 2 N -0.54 -8.36 4.64 -242.92 -1.13 -9.49 16 3 C 0.05 0.94 4.78 -3.82 -0.02 0.93 16 4 C -0.10 -2.26 5.08 -26.73 -0.14 -2.39 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 7 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.05 0.66 5.39 -3.83 -0.02 0.64 16 15 C 0.06 0.76 4.93 37.16 0.18 0.94 16 16 O -0.29 -4.23 9.95 -19.60 -0.19 -4.42 16 17 C 0.11 1.45 6.69 -39.18 -0.26 1.18 16 18 C -0.19 -2.04 9.04 -39.45 -0.36 -2.39 16 19 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 20 C -0.14 -1.22 10.04 -39.56 -0.40 -1.62 16 21 C -0.12 -1.23 10.02 -39.54 -0.40 -1.63 16 22 C 0.07 0.88 7.31 -39.30 -0.29 0.60 16 23 F -0.13 -2.01 17.11 2.25 0.04 -1.97 16 24 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 25 H 0.08 1.15 6.57 -51.93 -0.34 0.81 16 26 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 27 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 28 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.05 1.02 6.60 -51.93 -0.34 0.68 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 35 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 36 H 0.07 0.86 6.19 -51.93 -0.32 0.54 16 37 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 38 H 0.14 1.25 6.30 -52.49 -0.33 0.92 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -32.76 342.45 -8.72 -41.48 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.23 Total: -3.82 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.08 Total: -17.39 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.39 Total: -36.09 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.19 Total: -4.42 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.76 -8.72 -41.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102396581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.237 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds