Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00075 * 2 1 4 4 C 1.53000 * 109.47364 * 66.03783 * 3 2 1 5 5 C 1.53000 * 109.46791 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46937 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00500 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46819 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47153 * 119.99715 * 10 8 6 13 13 H 1.48495 * 109.47361 * 239.99892 * 10 8 6 14 14 C 1.46891 * 111.00283 * 236.03991 * 2 1 3 15 15 C 1.53001 * 109.47149 * 199.81085 * 14 2 1 16 16 O 1.42904 * 109.46835 * 65.10449 * 15 14 2 17 17 C 1.35954 * 116.99611 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.06687 * 359.97438 * 17 16 15 19 19 C 1.38185 * 119.97146 * 180.02562 * 18 17 16 20 20 C 1.38261 * 120.09446 * 0.02562 * 19 18 17 21 21 C 1.38261 * 120.12426 * 359.97438 * 20 19 18 22 22 C 1.38323 * 120.03172 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.04780 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.47361 * 177.98380 * 1 2 3 25 25 H 1.08998 * 109.47614 * 297.99234 * 1 2 3 26 26 H 1.09002 * 109.46701 * 57.98716 * 1 2 3 27 27 H 1.08998 * 109.47038 * 186.04555 * 3 2 1 28 28 H 1.09006 * 109.46936 * 306.04143 * 3 2 1 29 29 H 1.08997 * 109.47216 * 300.00127 * 4 3 2 30 30 H 1.08993 * 109.46802 * 60.00620 * 4 3 2 31 31 H 1.08997 * 109.47313 * 300.00029 * 5 4 3 32 32 H 1.09006 * 109.47253 * 60.00517 * 5 4 3 33 33 H 0.96996 * 119.99943 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47535 * 79.81189 * 14 2 1 35 35 H 1.08999 * 109.47142 * 319.81320 * 14 2 1 36 36 H 1.08993 * 109.47162 * 305.10575 * 15 14 2 37 37 H 1.09000 * 109.47123 * 185.09737 * 15 14 2 38 38 H 1.07997 * 120.01365 * 0.04506 * 18 17 16 39 39 H 1.07993 * 119.94795 * 180.27543 * 19 18 17 40 40 H 1.07994 * 119.93781 * 179.97438 * 20 19 18 41 41 H 1.07999 * 119.97773 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1792 3.4861 1.3177 6 6 1.8211 4.1618 2.6164 7 1 1.2594 3.6257 3.3671 8 6 2.2106 5.4642 2.8462 9 7 2.8951 6.1169 1.9322 10 14 1.7661 6.3020 4.4555 11 1 0.9998 5.3591 5.3093 12 1 3.0077 6.7101 5.1606 13 1 0.9381 7.5026 4.1764 14 6 1.9955 -0.7660 -1.1374 15 6 3.4453 -1.1658 -0.8558 16 8 3.4843 -2.0655 0.2538 17 6 4.7069 -2.5206 0.6366 18 6 5.8445 -2.1102 -0.0416 19 6 7.0861 -2.5744 0.3489 20 6 7.1959 -3.4480 1.4148 21 6 6.0641 -3.8598 2.0939 22 6 4.8187 -3.3984 1.7074 23 9 3.7126 -3.8001 2.3711 24 1 -0.3634 -1.0270 -0.0362 25 1 -0.3634 0.4823 0.9074 26 1 -0.3633 0.5448 -0.8714 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8310 29 1 0.5471 2.0846 1.4263 30 1 2.0657 1.5018 2.1491 31 1 3.2635 3.4595 1.2094 32 1 1.7445 4.0418 0.4868 33 1 3.1694 7.0331 2.0941 34 1 1.9561 -0.1530 -2.0379 35 1 1.3928 -1.6627 -1.2817 36 1 4.0289 -0.2754 -0.6222 37 1 3.8647 -1.6549 -1.7350 38 1 5.7603 -1.4279 -0.8745 39 1 7.9723 -2.2510 -0.1768 40 1 8.1674 -3.8095 1.7176 41 1 6.1526 -4.5420 2.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102396581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = -83.643140 kcal Electronic energy + Delta-G solvation = -21510.705091 eV Core-core repulsion = 18111.376449 eV Total energy + Delta-G solvation = -3399.328642 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.77850 -40.97643 -39.12073 -38.04057 -35.69832 -33.46720 -31.70774 -31.55097 -30.03926 -28.80221 -26.45341 -25.09972 -23.58955 -23.38817 -22.14321 -21.39368 -19.45131 -18.50659 -18.02314 -17.56084 -17.46184 -16.69132 -16.54756 -16.21589 -16.02067 -15.74335 -15.35173 -15.30082 -15.01073 -14.51040 -14.32432 -13.79021 -13.59117 -13.46017 -13.31589 -13.05596 -12.80301 -12.71889 -12.61737 -12.51519 -12.34023 -12.18230 -11.87926 -11.83709 -11.44101 -11.31147 -11.09166 -10.56668 -9.90910 -9.25050 -9.14469 -8.21834 -6.32548 0.16259 0.32403 1.38426 1.38878 1.52630 2.15404 2.39792 2.64852 2.94857 3.11154 3.30086 3.73692 3.88043 3.98367 4.07551 4.13709 4.23488 4.29639 4.35237 4.38235 4.44057 4.55691 4.63975 4.68869 4.69397 4.81917 4.92564 5.02410 5.03554 5.07285 5.13843 5.23341 5.28813 5.45603 5.50432 5.71973 5.75854 5.84020 6.07262 6.14783 6.26834 6.41097 6.83553 7.36606 8.90260 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003600 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.090482 B = 7776.501483 C = 8556.306972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.067 3.933 4 C -0.090 4.090 5 C 0.028 3.972 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.054 3.946 15 C 0.062 3.938 16 O -0.316 6.316 17 C 0.080 3.920 18 C -0.193 4.193 19 C -0.086 4.086 20 C -0.131 4.131 21 C -0.118 4.118 22 C 0.026 3.974 23 F -0.153 7.153 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.041 0.959 31 H -0.009 1.009 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -20.734 -7.718 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.010 4.010 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.200 1.200 14 C -0.074 4.074 15 C -0.013 4.013 16 O -0.230 6.230 17 C 0.034 3.966 18 C -0.212 4.212 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.137 4.137 22 C 0.006 3.994 23 F -0.132 7.132 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.010 0.990 32 H 0.012 0.988 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.184 0.816 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.846 -20.866 -7.236 23.122 hybrid contribution -0.690 1.280 0.095 1.457 sum 6.156 -19.586 -7.141 21.737 Atomic orbital electron populations 1.22397 0.86445 1.02306 1.00922 1.61930 1.08892 1.13542 1.43581 1.22082 0.99514 0.87545 0.96906 1.21385 0.99736 0.95370 0.96333 1.18956 0.94613 0.91952 0.95445 1.21704 1.35069 0.98371 1.03060 0.92703 1.25952 0.94880 0.98178 1.00615 1.70093 1.39296 1.11755 1.36064 0.85414 0.78225 0.78359 0.79160 1.18928 1.20190 1.20033 1.22248 0.94261 0.98717 0.92142 1.23110 0.98584 0.91981 0.87658 1.86202 1.25690 1.60762 1.50300 1.19424 0.86591 0.95575 0.95060 1.21482 0.91872 1.04631 1.03188 1.21472 0.97327 0.95250 0.96314 1.21344 0.98955 0.98604 0.95971 1.21345 0.89673 1.01015 1.01644 1.17554 0.84274 1.02399 0.95179 1.91440 1.52434 1.89579 1.79732 0.90117 0.92277 0.94933 0.91584 0.94895 0.93171 0.94035 0.99023 0.98777 0.92695 0.90492 0.88787 0.92323 0.88726 0.83187 0.82042 0.81630 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.25 127.69 1.18 1.92 16 2 N -0.55 -16.98 4.64 -922.46 -4.28 -21.26 16 3 C 0.07 2.39 4.78 86.30 0.41 2.80 16 4 C -0.09 -4.00 5.08 30.59 0.16 -3.84 16 5 C 0.03 1.53 4.97 29.85 0.15 1.68 16 6 C -0.54 -32.24 9.11 25.60 0.23 -32.01 16 7 H 0.05 3.18 7.74 -2.91 -0.02 3.15 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 10 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.05 1.24 5.39 86.31 0.46 1.70 16 15 C 0.06 1.41 4.93 71.98 0.36 1.76 16 16 O -0.32 -9.41 9.95 -93.03 -0.93 -10.33 16 17 C 0.08 2.18 6.69 22.53 0.15 2.33 16 18 C -0.19 -3.97 9.04 22.36 0.20 -3.77 16 19 C -0.09 -1.35 10.04 22.26 0.22 -1.12 16 20 C -0.13 -1.97 10.04 22.28 0.22 -1.75 16 21 C -0.12 -2.34 10.02 22.30 0.22 -2.12 16 22 C 0.03 0.70 7.31 22.45 0.16 0.87 16 23 F -0.15 -4.91 17.11 44.97 0.77 -4.14 16 24 H 0.08 1.86 7.93 -2.39 -0.02 1.84 16 25 H 0.06 1.78 6.57 -2.39 -0.02 1.77 16 26 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 27 H 0.07 2.33 6.57 -2.39 -0.02 2.32 16 28 H 0.03 1.14 8.11 -2.38 -0.02 1.12 16 29 H 0.05 2.17 6.60 -2.39 -0.02 2.16 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 33 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 35 H 0.09 1.92 7.80 -2.39 -0.02 1.91 16 36 H 0.06 1.44 6.19 -2.39 -0.01 1.42 16 37 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 38 H 0.15 2.51 6.30 -2.91 -0.02 2.50 16 39 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -72.51 342.45 3.48 -69.02 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.01 Total: 7.46 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.60 Total: -31.00 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -4.00 Total: -78.41 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.93 Total: -10.33 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.77 Total: -4.14 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.51 3.48 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102396581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.619 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds