Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33393 * 125.20003 * 2 1 4 4 C 1.38418 * 114.91588 * 180.02562 * 3 2 1 5 5 C 1.33383 * 114.92773 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.20794 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47642 * 89.99842 * 6 5 4 8 8 C 1.46892 * 111.00440 * 170.00207 * 7 6 5 9 9 C 1.53005 * 109.47171 * 287.47362 * 8 7 6 10 10 C 1.52995 * 109.47166 * 179.08943 * 9 8 7 11 11 C 1.50707 * 109.46991 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99623 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99414 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00204 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47232 * 90.00292 * 15 13 11 17 17 H 1.48499 * 109.46935 * 209.99907 * 15 13 11 18 18 H 1.48503 * 109.47262 * 330.00224 * 15 13 11 19 19 C 1.46897 * 110.99706 * 293.95786 * 7 6 5 20 20 C 1.53002 * 109.47145 * 171.07800 * 19 7 6 21 21 C 1.52998 * 109.47228 * 291.07907 * 19 7 6 22 22 S 1.75886 * 125.20325 * 180.32925 * 2 1 3 23 23 H 1.08999 * 109.47056 * 89.99926 * 1 2 3 24 24 H 1.09000 * 109.47085 * 209.99124 * 1 2 3 25 25 H 1.08997 * 109.47722 * 329.99869 * 1 2 3 26 26 H 1.08000 * 122.53542 * 0.02562 * 3 2 1 27 27 H 1.08006 * 122.53456 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46865 * 329.99686 * 6 5 4 29 29 H 1.09004 * 109.47394 * 210.00057 * 6 5 4 30 30 H 1.09006 * 109.47014 * 47.46760 * 8 7 6 31 31 H 1.08994 * 109.47697 * 167.47272 * 8 7 6 32 32 H 1.08998 * 109.46744 * 299.09118 * 9 8 7 33 33 H 1.09002 * 109.46729 * 59.08910 * 9 8 7 34 34 H 1.09004 * 109.47141 * 299.99453 * 10 9 8 35 35 H 1.08993 * 109.47319 * 60.00103 * 10 9 8 36 36 H 0.97005 * 119.99538 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47362 * 51.07447 * 19 7 6 38 38 H 1.09001 * 109.46729 * 66.36821 * 20 19 7 39 39 H 1.08997 * 109.46873 * 186.36473 * 20 19 7 40 40 H 1.08997 * 109.47125 * 306.36992 * 20 19 7 41 41 H 1.09007 * 109.47534 * 59.99926 * 21 19 7 42 42 H 1.08997 * 109.47567 * 179.97438 * 21 19 7 43 43 H 1.09008 * 109.47153 * 300.00456 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3860 -0.9769 -0.0029 7 7 5.8456 -1.1498 1.3817 8 6 7.1185 -1.8816 1.4264 9 6 6.8726 -3.3536 1.0893 10 6 8.2015 -4.1113 1.1137 11 6 7.9593 -5.5611 0.7809 12 1 6.9578 -5.9075 0.5733 13 6 9.0165 -6.4454 0.7426 14 7 8.8051 -7.7107 0.4528 15 14 10.7488 -5.8465 1.1025 16 1 11.0226 -5.9682 2.5570 17 1 11.7248 -6.6701 0.3446 18 1 10.8764 -4.4250 0.6921 19 6 5.9591 0.1460 2.0642 20 6 6.2214 -0.0835 3.5540 21 6 7.1174 0.9416 1.4590 22 16 2.5210 -1.4372 -0.0083 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.8667 2.0895 0.0004 27 1 4.3720 1.6351 -0.0002 28 1 6.0384 -0.2710 -0.5168 29 1 5.4133 -1.9376 -0.5173 30 1 7.8096 -1.4532 0.7005 31 1 7.5470 -1.8045 2.4256 32 1 6.1941 -3.7863 1.8244 33 1 6.4291 -3.4297 0.0964 34 1 8.8800 -3.6786 0.3784 35 1 8.6450 -4.0352 2.1064 36 1 9.5488 -8.3330 0.4262 37 1 5.0311 0.7044 1.9405 38 1 7.2023 -0.5408 3.6839 39 1 6.1933 0.8712 4.0792 40 1 5.4558 -0.7444 3.9602 41 1 6.9305 1.1052 0.3976 42 1 7.2013 1.9033 1.9651 43 1 8.0454 0.3832 1.5826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102398059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = 17.095657 kcal Electronic energy + Delta-G solvation = -19911.725087 eV Core-core repulsion = 17082.977982 eV Total energy + Delta-G solvation = -2828.747104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.16752 -37.53523 -34.07043 -32.86431 -32.09285 -30.68595 -28.35964 -27.15299 -26.19102 -24.21512 -22.83238 -22.53308 -20.16229 -19.31736 -18.79157 -16.85543 -16.66636 -15.68789 -15.39728 -15.16816 -14.39727 -14.13711 -14.06784 -13.77838 -13.71502 -13.25676 -12.76442 -12.65841 -12.58708 -12.31377 -12.17010 -11.96075 -11.87616 -11.52773 -11.44446 -11.24078 -11.20946 -10.92853 -10.71426 -10.59279 -10.52271 -9.86325 -9.62405 -9.54318 -9.13849 -8.51453 -8.49841 -8.41022 -8.04792 -6.00721 -3.98099 0.98300 1.64408 2.07699 2.68969 3.32410 3.39585 3.43105 4.12960 4.47966 4.74137 4.82969 4.94000 5.09038 5.11535 5.23468 5.32724 5.33375 5.35840 5.40870 5.50533 5.58489 5.62155 5.69644 5.74254 5.80169 5.82074 5.94005 5.98988 6.13614 6.16198 6.24944 6.28567 6.34533 6.51263 6.57686 6.63790 6.95592 7.26601 7.30365 7.41523 7.50779 7.84213 8.59090 9.05382 9.62080 11.12947 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.003965 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.494186 B = 7059.205986 C = 8045.832061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.195 4.195 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.115 3.885 7 N -0.525 5.525 8 C 0.050 3.950 9 C -0.097 4.097 10 C -0.013 4.013 11 C -0.517 4.517 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.070 3.930 20 C -0.143 4.143 21 C -0.187 4.187 22 S 0.128 5.872 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 20.796 0.562 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.313 4.313 3 C -0.171 4.171 4 C -0.174 4.174 5 C -0.273 4.273 6 C -0.014 4.014 7 N -0.248 5.248 8 C -0.077 4.077 9 C -0.135 4.135 10 C -0.051 4.051 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.038 4.038 20 C -0.200 4.200 21 C -0.246 4.246 22 S 0.393 5.607 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.768 18.772 0.782 22.716 hybrid contribution 1.933 2.208 -0.256 2.946 sum -10.835 20.980 0.526 23.619 Atomic orbital electron populations 1.20293 0.88185 1.02926 1.02468 1.24540 0.99914 0.96501 1.10301 1.19958 0.92876 0.98909 1.05362 1.20004 0.96059 0.95789 1.05593 1.24382 0.98715 0.96126 1.08032 1.20625 0.88606 1.01182 0.90937 1.62279 1.30646 1.17982 1.13925 1.22389 0.88626 0.95518 1.01148 1.21469 0.99783 0.91404 1.00804 1.19547 0.93194 0.96272 0.96051 1.21153 0.95950 0.91364 1.47034 0.91033 1.25041 0.99026 0.94754 0.94764 1.69923 1.31773 1.03011 1.49708 0.86776 0.84757 0.79169 0.78551 1.20329 1.21472 1.19105 1.21768 0.97967 0.89660 0.94437 1.21839 1.02345 1.01255 0.94606 1.22492 1.00207 1.00855 1.01019 1.84500 0.95896 1.08417 1.71887 0.91016 0.91388 0.90877 0.84974 0.84970 0.92869 0.88981 0.95005 0.90672 0.92025 0.93083 0.96945 0.97148 0.92816 0.89824 0.92467 0.92777 0.91710 0.92806 0.92432 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.38 36.01 0.37 -0.26 16 2 C -0.19 -2.09 6.51 -36.00 -0.23 -2.33 16 3 C -0.14 -1.48 10.05 -41.21 -0.41 -1.89 16 4 C -0.14 -1.62 8.43 -41.21 -0.35 -1.97 16 5 C -0.15 -1.97 5.46 -36.01 -0.20 -2.17 16 6 C 0.12 1.58 5.18 -4.98 -0.03 1.55 16 7 N -0.52 -7.54 4.41 -228.08 -1.01 -8.54 16 8 C 0.05 0.81 3.72 -3.83 -0.01 0.80 16 9 C -0.10 -1.94 5.23 -26.73 -0.14 -2.08 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -14.98 9.66 -34.43 -0.33 -15.32 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 15 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C 0.07 0.85 2.77 -67.71 -0.19 0.67 16 20 C -0.14 -1.67 8.98 37.16 0.33 -1.34 16 21 C -0.19 -2.05 8.51 37.16 0.32 -1.74 16 22 S 0.13 1.62 23.31 -107.50 -2.51 -0.89 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.13 1.31 7.98 -52.48 -0.42 0.90 16 28 H 0.05 0.68 6.35 -51.93 -0.33 0.35 16 29 H 0.09 1.38 6.42 -51.93 -0.33 1.04 16 30 H 0.03 0.51 7.16 -51.93 -0.37 0.14 16 31 H 0.07 1.20 5.98 -51.93 -0.31 0.89 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.03 6.60 -51.93 -0.34 0.69 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.08 1.01 5.77 -51.93 -0.30 0.71 16 38 H 0.06 0.70 6.52 -51.93 -0.34 0.36 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.58 6.53 -51.92 -0.34 0.24 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.73 6.71 -51.92 -0.35 0.38 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -30.80 346.44 -10.43 -41.24 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.17 Total: -2.15 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -1.08 Total: -24.67 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.23 Total: -36.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.80 -10.43 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.331 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds