Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47441 * 2 1 4 4 C 1.53002 * 109.47202 * 239.99808 * 2 1 3 5 5 C 1.53001 * 109.47015 * 120.00159 * 2 1 3 6 6 N 1.46897 * 109.47219 * 77.49268 * 5 2 1 7 7 C 1.46897 * 111.00101 * 82.68505 * 6 5 2 8 8 C 1.50693 * 109.47476 * 71.56422 * 7 6 5 9 9 H 1.07999 * 120.00124 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00347 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00596 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99731 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47108 * 90.00461 * 12 10 8 14 14 H 1.48507 * 109.47193 * 209.99867 * 12 10 8 15 15 H 1.48500 * 109.47384 * 330.00451 * 12 10 8 16 16 C 1.46902 * 111.00085 * 318.72471 * 6 5 2 17 17 C 1.52995 * 109.47499 * 292.29253 * 16 6 5 18 18 C 1.50696 * 109.47400 * 184.05679 * 17 16 6 19 19 C 1.33385 * 125.20513 * 89.99445 * 18 17 16 20 20 C 1.38430 * 114.92235 * 179.97438 * 19 18 17 21 21 C 1.33393 * 114.91948 * 0.02562 * 20 19 18 22 22 S 1.75885 * 109.59273 * 359.75935 * 21 20 19 23 23 H 1.08995 * 109.47048 * 292.75408 * 1 2 3 24 24 H 1.09001 * 109.46919 * 52.75128 * 1 2 3 25 25 H 1.09003 * 109.47173 * 172.74803 * 1 2 3 26 26 H 1.08996 * 109.47258 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46634 * 299.99972 * 3 2 1 28 28 H 1.08996 * 109.46759 * 59.99759 * 3 2 1 29 29 H 1.09003 * 109.47569 * 306.08865 * 4 2 1 30 30 H 1.08997 * 109.47093 * 66.08821 * 4 2 1 31 31 H 1.08999 * 109.47196 * 186.08761 * 4 2 1 32 32 H 1.09001 * 109.47077 * 317.49156 * 5 2 1 33 33 H 1.09003 * 109.47137 * 197.48962 * 5 2 1 34 34 H 1.09009 * 109.46876 * 191.56209 * 7 6 5 35 35 H 1.08997 * 109.47072 * 311.55710 * 7 6 5 36 36 H 0.96994 * 120.00435 * 179.97438 * 11 10 8 37 37 H 1.08997 * 109.47169 * 172.28763 * 16 6 5 38 38 H 1.09005 * 109.46743 * 52.29276 * 16 6 5 39 39 H 1.09004 * 109.46982 * 64.05499 * 17 16 6 40 40 H 1.09004 * 109.46943 * 304.05819 * 17 16 6 41 41 H 1.08000 * 122.54190 * 359.96159 * 19 18 17 42 42 H 1.07997 * 122.53764 * 180.02562 * 20 19 18 43 43 H 1.07997 * 125.20011 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.9204 -2.1730 1.0596 7 6 3.0628 -2.7008 0.3018 8 6 4.2959 -2.6733 1.1676 9 1 4.2370 -2.3005 2.1795 10 6 5.4995 -3.1229 0.6677 11 7 6.5758 -3.0984 1.4231 12 14 5.6017 -3.7669 -1.0829 13 1 5.9208 -2.6471 -2.0045 14 1 6.6668 -4.7981 -1.1696 15 1 4.2987 -4.3675 -1.4662 16 6 0.6508 -2.5157 0.4048 17 6 -0.5105 -2.2121 1.3535 18 6 -1.8047 -2.6556 0.7214 19 6 -2.3502 -3.8655 0.8541 20 6 -3.5462 -4.0432 0.1801 21 6 -3.9716 -2.9777 -0.5004 22 16 -2.8301 -1.6548 -0.2987 23 1 -0.3633 0.3975 0.9476 24 1 -0.3633 0.6220 -0.8181 25 1 -0.3634 -1.0195 -0.1297 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.5905 -1.7127 -1.3054 30 1 1.7684 -0.1484 -2.1359 31 1 3.1245 -0.8166 -1.1964 32 1 1.4468 -0.4175 2.1118 33 1 3.0852 -0.4618 1.4174 34 1 2.8547 -3.7270 -0.0016 35 1 3.2266 -2.0864 -0.5835 36 1 7.4225 -3.4151 1.0715 37 1 0.6464 -3.5761 0.1529 38 1 0.5404 -1.9256 -0.5051 39 1 -0.5499 -1.1403 1.5483 40 1 -0.3625 -2.7467 2.2918 41 1 -1.8934 -4.6474 1.4426 42 1 -4.0934 -4.9740 0.2034 43 1 -4.8803 -2.9327 -1.0823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109813480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = 95.046081 kcal Electronic energy + Delta-G solvation = -21101.399904 eV Core-core repulsion = 18276.032984 eV Total energy + Delta-G solvation = -2825.366920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13125 -37.75075 -34.00795 -33.37118 -31.91726 -28.68028 -27.89321 -26.89068 -26.42553 -25.06703 -23.30990 -21.70885 -20.15362 -19.30751 -18.45975 -17.05657 -16.80995 -15.91112 -15.34206 -14.79782 -14.67317 -14.07293 -13.75294 -13.57873 -13.31593 -12.86396 -12.70959 -12.41892 -12.27256 -12.07179 -12.05116 -11.78508 -11.35031 -11.30650 -11.05234 -10.92687 -10.88972 -10.75341 -10.61481 -10.30690 -10.16084 -9.86744 -9.74781 -9.70549 -9.22795 -8.56374 -8.52230 -8.46265 -7.07563 -6.01529 -3.96469 1.02048 1.64829 2.01756 2.77071 3.28046 3.36888 3.38559 4.44139 4.63737 5.01390 5.09506 5.13011 5.16756 5.24455 5.31671 5.35782 5.53511 5.59385 5.63025 5.78620 5.82893 5.89811 5.93798 6.03588 6.07334 6.12123 6.15912 6.18843 6.26939 6.35348 6.38848 6.42897 6.51517 6.56352 6.65796 6.73334 6.80801 6.97231 7.08960 7.69286 7.97980 8.11390 8.72186 9.08942 9.61112 11.12074 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.005232 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.114749 B = 5350.519980 C = 6030.078710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.167 4.167 5 C 0.068 3.932 6 N -0.518 5.518 7 C 0.132 3.868 8 C -0.502 4.502 9 H 0.079 0.921 10 C 0.067 3.933 11 N -0.903 5.903 12 Si 0.869 3.131 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.021 3.979 17 C -0.069 4.069 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.230 4.230 22 S 0.089 5.911 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 4.131 -4.625 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.223 4.223 5 C -0.061 4.061 6 N -0.241 5.241 7 C 0.006 3.994 8 C -0.540 4.540 9 H 0.097 0.903 10 C -0.133 4.133 11 N -0.543 5.543 12 Si 0.697 3.303 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.271 4.271 19 C -0.179 4.179 20 C -0.160 4.160 21 C -0.366 4.366 22 S 0.352 5.648 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.569 5.315 -4.685 19.875 hybrid contribution 0.029 -1.549 -1.222 1.973 sum -18.540 3.766 -5.907 19.820 Atomic orbital electron populations 1.23236 0.95849 1.04057 1.00765 1.21167 0.95047 0.96130 0.97578 1.21806 1.01369 0.95343 1.00792 1.22728 1.02704 1.00557 0.96341 1.22262 1.02326 0.87287 0.94211 1.62111 1.01058 1.11244 1.49640 1.20874 0.89262 0.94870 0.94378 1.21057 0.90536 1.41476 1.00939 0.90332 1.24868 0.95713 0.95669 0.97091 1.69890 0.99878 1.48095 1.36392 0.86955 0.78098 0.79250 0.86026 1.20338 1.21269 1.19174 1.23079 0.90035 1.01110 0.96446 1.20764 0.87836 1.03204 0.98980 1.24676 1.01407 0.97256 1.03782 1.20181 0.96623 0.97445 1.03608 1.20165 0.97197 0.99493 0.99135 1.25605 1.04875 0.97599 1.08481 1.84346 1.15607 1.16264 1.48623 0.92680 0.93651 0.88607 0.92321 0.93467 0.92998 0.90932 0.93885 0.90388 0.92380 0.89430 0.96116 0.96176 0.92797 0.91810 0.90813 0.88955 0.89447 0.84225 0.84677 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 6.09 37.16 0.23 -2.19 16 2 C -0.10 -1.49 0.77 -154.51 -0.12 -1.60 16 3 C -0.14 -1.87 8.40 37.16 0.31 -1.56 16 4 C -0.17 -2.75 6.53 37.16 0.24 -2.51 16 5 C 0.07 1.22 4.60 -3.83 -0.02 1.20 16 6 N -0.52 -10.30 4.65 -236.08 -1.10 -11.40 16 7 C 0.13 3.07 3.16 -4.98 -0.02 3.05 16 8 C -0.50 -13.97 8.86 -34.44 -0.31 -14.27 16 9 H 0.08 2.41 7.96 -52.49 -0.42 1.99 16 10 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 12 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 16 C 0.02 0.35 3.77 -3.83 -0.01 0.34 16 17 C -0.07 -0.97 4.64 -27.89 -0.13 -1.10 16 18 C -0.15 -1.98 5.52 -36.01 -0.20 -2.18 16 19 C -0.15 -1.83 10.05 -41.21 -0.41 -2.24 16 20 C -0.13 -1.40 10.18 -41.20 -0.42 -1.82 16 21 C -0.23 -2.41 11.23 29.04 0.33 -2.08 16 22 S 0.09 1.01 21.73 -107.50 -2.34 -1.32 16 23 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 1.28 1.26 -51.93 -0.07 1.22 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.23 4.03 -51.93 -0.21 1.02 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.47 6.15 -51.93 -0.32 1.15 16 32 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 33 H 0.09 1.82 6.88 -51.93 -0.36 1.46 16 34 H 0.02 0.51 6.85 -51.92 -0.36 0.15 16 35 H 0.02 0.47 2.92 -51.93 -0.15 0.32 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 38 H 0.07 1.18 2.29 -51.93 -0.12 1.06 16 39 H 0.09 1.25 4.02 -51.93 -0.21 1.04 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -29.49 323.54 -9.40 -38.89 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.32 Total: 4.22 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -0.62 Total: -25.12 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.32 Total: -38.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.34 Total: -1.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.49 -9.40 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.936 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds