Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47441 * 2 1 4 4 C 1.53002 * 109.47202 * 239.99808 * 2 1 3 5 5 C 1.53001 * 109.47015 * 120.00159 * 2 1 3 6 6 N 1.46897 * 109.47219 * 77.49268 * 5 2 1 7 7 C 1.46897 * 111.00101 * 82.68505 * 6 5 2 8 8 C 1.50693 * 109.47476 * 71.56422 * 7 6 5 9 9 H 1.07999 * 120.00124 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00347 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00596 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99731 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47108 * 90.00461 * 12 10 8 14 14 H 1.48507 * 109.47193 * 209.99867 * 12 10 8 15 15 H 1.48500 * 109.47384 * 330.00451 * 12 10 8 16 16 C 1.46902 * 111.00085 * 318.72471 * 6 5 2 17 17 C 1.52995 * 109.47499 * 292.29253 * 16 6 5 18 18 C 1.50696 * 109.47400 * 184.05679 * 17 16 6 19 19 C 1.33385 * 125.20513 * 89.99445 * 18 17 16 20 20 C 1.38430 * 114.92235 * 179.97438 * 19 18 17 21 21 C 1.33393 * 114.91948 * 0.02562 * 20 19 18 22 22 S 1.75885 * 109.59273 * 359.75935 * 21 20 19 23 23 H 1.08995 * 109.47048 * 292.75408 * 1 2 3 24 24 H 1.09001 * 109.46919 * 52.75128 * 1 2 3 25 25 H 1.09003 * 109.47173 * 172.74803 * 1 2 3 26 26 H 1.08996 * 109.47258 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46634 * 299.99972 * 3 2 1 28 28 H 1.08996 * 109.46759 * 59.99759 * 3 2 1 29 29 H 1.09003 * 109.47569 * 306.08865 * 4 2 1 30 30 H 1.08997 * 109.47093 * 66.08821 * 4 2 1 31 31 H 1.08999 * 109.47196 * 186.08761 * 4 2 1 32 32 H 1.09001 * 109.47077 * 317.49156 * 5 2 1 33 33 H 1.09003 * 109.47137 * 197.48962 * 5 2 1 34 34 H 1.09009 * 109.46876 * 191.56209 * 7 6 5 35 35 H 1.08997 * 109.47072 * 311.55710 * 7 6 5 36 36 H 0.96994 * 120.00435 * 179.97438 * 11 10 8 37 37 H 1.08997 * 109.47169 * 172.28763 * 16 6 5 38 38 H 1.09005 * 109.46743 * 52.29276 * 16 6 5 39 39 H 1.09004 * 109.46982 * 64.05499 * 17 16 6 40 40 H 1.09004 * 109.46943 * 304.05819 * 17 16 6 41 41 H 1.08000 * 122.54190 * 359.96159 * 19 18 17 42 42 H 1.07997 * 122.53764 * 180.02562 * 20 19 18 43 43 H 1.07997 * 125.20011 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.9204 -2.1730 1.0596 7 6 3.0628 -2.7008 0.3018 8 6 4.2959 -2.6733 1.1676 9 1 4.2370 -2.3005 2.1795 10 6 5.4995 -3.1229 0.6677 11 7 6.5758 -3.0984 1.4231 12 14 5.6017 -3.7669 -1.0829 13 1 5.9208 -2.6471 -2.0045 14 1 6.6668 -4.7981 -1.1696 15 1 4.2987 -4.3675 -1.4662 16 6 0.6508 -2.5157 0.4048 17 6 -0.5105 -2.2121 1.3535 18 6 -1.8047 -2.6556 0.7214 19 6 -2.3502 -3.8655 0.8541 20 6 -3.5462 -4.0432 0.1801 21 6 -3.9716 -2.9777 -0.5004 22 16 -2.8301 -1.6548 -0.2987 23 1 -0.3633 0.3975 0.9476 24 1 -0.3633 0.6220 -0.8181 25 1 -0.3634 -1.0195 -0.1297 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.5905 -1.7127 -1.3054 30 1 1.7684 -0.1484 -2.1359 31 1 3.1245 -0.8166 -1.1964 32 1 1.4468 -0.4175 2.1118 33 1 3.0852 -0.4618 1.4174 34 1 2.8547 -3.7270 -0.0016 35 1 3.2266 -2.0864 -0.5835 36 1 7.4225 -3.4151 1.0715 37 1 0.6464 -3.5761 0.1529 38 1 0.5404 -1.9256 -0.5051 39 1 -0.5499 -1.1403 1.5483 40 1 -0.3625 -2.7467 2.2918 41 1 -1.8934 -4.6474 1.4426 42 1 -4.0934 -4.9740 0.2034 43 1 -4.8803 -2.9327 -1.0823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109813480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = 77.708341 kcal Electronic energy + Delta-G solvation = -21102.151725 eV Core-core repulsion = 18276.032984 eV Total energy + Delta-G solvation = -2826.118741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48796 -38.65821 -35.57641 -34.81236 -33.70282 -30.08407 -29.24129 -28.40720 -27.54751 -26.33652 -24.60324 -23.09279 -21.73156 -20.27587 -19.66682 -18.93532 -17.99746 -17.13285 -16.58619 -16.41485 -16.02419 -15.48558 -15.31174 -14.95544 -14.51121 -14.38389 -13.94304 -13.62219 -13.43406 -13.27565 -13.16413 -12.93546 -12.89670 -12.72130 -12.52519 -12.30165 -12.23806 -12.10228 -11.88576 -11.80886 -11.57534 -11.47005 -11.42684 -11.08404 -10.99495 -10.69982 -9.49713 -9.31003 -8.61847 -8.24597 -6.24339 0.14010 0.77653 1.16126 1.32805 1.35451 1.45632 1.90009 2.35674 3.09238 3.27784 3.86468 3.91366 3.99150 4.08804 4.12783 4.29064 4.35076 4.54549 4.57937 4.63236 4.68844 4.75396 4.77172 4.82306 4.85755 4.88811 5.00377 5.04030 5.07616 5.10461 5.18629 5.22219 5.32202 5.33540 5.42120 5.47920 5.48877 5.54476 5.63924 5.65998 6.07913 6.50290 6.74897 6.81338 7.37476 8.92711 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.005232 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.114749 B = 5350.519980 C = 6030.078710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.167 4.167 5 C 0.071 3.929 6 N -0.537 5.537 7 C 0.142 3.858 8 C -0.504 4.504 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.952 5.952 12 Si 0.938 3.062 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.250 1.250 16 C 0.026 3.974 17 C -0.057 4.057 18 C -0.179 4.179 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.222 4.222 22 S 0.099 5.901 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.767 4.592 -6.957 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.095 4.095 3 C -0.190 4.190 4 C -0.223 4.223 5 C -0.058 4.058 6 N -0.260 5.260 7 C 0.015 3.985 8 C -0.543 4.543 9 H 0.051 0.949 10 C -0.189 4.189 11 N -0.594 5.594 12 Si 0.762 3.238 13 H -0.189 1.189 14 H -0.210 1.210 15 H -0.174 1.174 16 C -0.102 4.102 17 C -0.096 4.096 18 C -0.296 4.296 19 C -0.183 4.183 20 C -0.171 4.171 21 C -0.357 4.357 22 S 0.362 5.638 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.535 5.790 -7.014 23.377 hybrid contribution 0.881 -1.669 -0.396 1.928 sum -20.654 4.121 -7.409 22.326 Atomic orbital electron populations 1.23147 0.93646 1.04438 1.02130 1.21096 0.96695 0.96399 0.95286 1.21781 1.00252 0.94587 1.02425 1.22665 1.00652 1.00963 0.98016 1.22187 1.00377 0.86702 0.96504 1.61982 1.01478 1.12515 1.49987 1.20656 0.88766 0.94857 0.94176 1.21305 0.92830 1.40520 0.99637 0.94928 1.25766 0.95154 0.96041 1.01943 1.70054 1.00665 1.49804 1.38857 0.85842 0.78745 0.78936 0.80253 1.18922 1.21049 1.17400 1.23123 0.89040 1.00521 0.97479 1.20546 0.87720 1.03451 0.97868 1.24533 1.01489 0.98192 1.05414 1.20406 0.97225 0.97264 1.03403 1.20378 0.96875 1.00736 0.99137 1.25997 1.05233 0.96723 1.07767 1.84233 1.15409 1.16287 1.47891 0.91679 0.91787 0.88854 0.94148 0.91385 0.91802 0.91481 0.91319 0.93296 0.91165 0.93303 0.96912 0.94726 0.92683 0.93030 0.89484 0.88275 0.90739 0.84329 0.82546 0.79701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 6.09 71.98 0.44 -3.74 16 2 C -0.09 -2.70 0.77 -52.18 -0.04 -2.74 16 3 C -0.13 -3.44 8.40 71.98 0.60 -2.84 16 4 C -0.17 -5.21 6.53 71.98 0.47 -4.74 16 5 C 0.07 2.58 4.60 86.30 0.40 2.98 16 6 N -0.54 -21.75 4.65 -900.81 -4.19 -25.93 16 7 C 0.14 6.74 3.16 85.56 0.27 7.01 16 8 C -0.50 -29.39 8.86 25.60 0.23 -29.17 16 9 H 0.03 2.14 7.96 -2.91 -0.02 2.11 16 10 C 0.01 0.43 5.47 84.65 0.46 0.90 16 11 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 12 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 15 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 16 C 0.03 0.84 3.77 86.30 0.33 1.16 16 17 C -0.06 -1.55 4.64 29.85 0.14 -1.41 16 18 C -0.18 -4.30 5.52 24.59 0.14 -4.16 16 19 C -0.15 -3.49 10.05 21.22 0.21 -3.28 16 20 C -0.14 -2.66 10.18 21.22 0.22 -2.44 16 21 C -0.22 -3.86 11.23 66.72 0.75 -3.11 16 22 S 0.10 1.97 21.73 -56.49 -1.23 0.74 16 23 H 0.06 1.43 6.81 -2.39 -0.02 1.41 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 2.26 1.26 -2.39 0.00 2.26 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.16 4.03 -2.39 -0.01 2.15 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.81 6.15 -2.39 -0.01 1.80 16 32 H 0.07 2.35 7.37 -2.39 -0.02 2.34 16 33 H 0.05 2.15 6.88 -2.39 -0.02 2.13 16 34 H 0.01 0.63 6.85 -2.38 -0.02 0.61 16 35 H 0.04 1.59 2.92 -2.39 -0.01 1.58 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 37 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 38 H 0.09 2.63 2.29 -2.38 -0.01 2.63 16 39 H 0.10 2.53 4.02 -2.38 -0.01 2.52 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -66.23 323.54 2.33 -63.90 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.95 Total: 20.66 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 4.61 Total: -45.58 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.89 Total: -86.03 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.23 Total: 0.74 kcal Total: -66.23 2.33 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.611 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds