Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47436 * 2 1 4 4 C 1.53000 * 109.47063 * 120.00324 * 2 1 3 5 5 N 1.46505 * 109.47083 * 55.55230 * 4 2 1 6 6 C 1.36933 * 120.00319 * 261.55606 * 5 4 2 7 7 H 1.07998 * 120.00179 * 170.10164 * 6 5 4 8 8 C 1.38817 * 120.00180 * 350.10001 * 6 5 4 9 9 N 1.31619 * 119.99485 * 44.73570 * 8 6 5 10 10 Si 1.86796 * 119.99929 * 224.73887 * 8 6 5 11 11 H 1.48498 * 109.47252 * 60.00155 * 10 8 6 12 12 H 1.48505 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47307 * 299.99729 * 10 8 6 14 14 C 1.46501 * 119.99740 * 81.56061 * 5 4 2 15 15 C 1.53003 * 109.47393 * 89.99648 * 14 5 4 16 16 H 1.08996 * 109.46517 * 60.00040 * 15 14 5 17 17 O 1.42901 * 109.46858 * 299.99854 * 15 14 5 18 18 C 1.50696 * 109.47045 * 180.02562 * 15 14 5 19 19 C 1.38245 * 119.97368 * 265.00177 * 18 15 14 20 20 C 1.38205 * 120.02409 * 180.02562 * 19 18 15 21 21 C 1.38457 * 119.97633 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.02914 * 179.97438 * 21 20 19 23 23 C 1.38461 * 119.94711 * 0.25781 * 21 20 19 24 24 C 1.38206 * 119.97465 * 359.46906 * 23 21 20 25 25 H 1.08996 * 109.47120 * 316.47769 * 1 2 3 26 26 H 1.09001 * 109.46673 * 76.47309 * 1 2 3 27 27 H 1.09001 * 109.47583 * 196.47317 * 1 2 3 28 28 H 1.09007 * 109.46920 * 239.99870 * 2 1 3 29 29 H 1.09001 * 109.47445 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47017 * 300.00064 * 3 2 1 31 31 H 1.09007 * 109.47172 * 60.00024 * 3 2 1 32 32 H 1.09001 * 109.46889 * 295.55939 * 4 2 1 33 33 H 1.08989 * 109.47536 * 175.55632 * 4 2 1 34 34 H 0.97004 * 119.99742 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47245 * 329.99501 * 14 5 4 36 36 H 1.08994 * 109.47071 * 210.00151 * 14 5 4 37 37 H 0.96698 * 114.00398 * 299.99972 * 17 15 14 38 38 H 1.08001 * 119.98827 * 0.02562 * 19 18 15 39 39 H 1.07996 * 120.00791 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.01485 * 179.74773 * 23 21 20 41 41 H 1.07992 * 119.98502 * 180.29797 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4662 -2.0682 1.3039 6 6 0.3717 -2.3148 2.0889 7 1 -0.1481 -3.2582 2.0099 8 6 -0.0699 -1.3522 2.9864 9 7 -0.1567 -0.0936 2.6115 10 14 -0.5407 -1.8434 4.7261 11 1 0.6319 -2.4536 5.4027 12 1 -0.9754 -0.6398 5.4797 13 1 -1.6524 -2.8268 4.6791 14 6 2.0634 -3.1512 0.5187 15 6 3.1381 -3.8526 1.3518 16 1 2.6867 -4.2644 2.2544 17 8 4.1509 -2.9113 1.7125 18 6 3.7528 -4.9663 0.5438 19 6 3.2770 -6.2577 0.6737 20 6 3.8404 -7.2800 -0.0664 21 6 4.8813 -7.0101 -0.9386 22 9 5.4331 -8.0086 -1.6622 23 6 5.3602 -5.7170 -1.0643 24 6 4.7915 -4.6954 -0.3273 25 1 -0.3633 0.7451 0.7077 26 1 -0.3633 0.2404 -0.9992 27 1 -0.3634 -0.9855 0.2914 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.7431 -0.1636 2.1374 33 1 3.1270 -0.7908 1.2104 34 1 -0.4649 0.5792 3.2388 35 1 2.5148 -2.7394 -0.3840 36 1 1.2909 -3.8692 0.2435 37 1 4.5963 -2.5039 0.9570 38 1 2.4648 -6.4680 1.3538 39 1 3.4682 -8.2887 0.0350 40 1 6.1747 -5.5060 -1.7412 41 1 5.1617 -3.6860 -0.4288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112656442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = -43.412817 kcal Electronic energy + Delta-G solvation = -22610.764007 eV Core-core repulsion = 19213.179882 eV Total energy + Delta-G solvation = -3397.584125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.89531 -39.45470 -37.20303 -35.76931 -32.93434 -31.76009 -31.10130 -30.70718 -27.27417 -25.79658 -25.50702 -23.79380 -23.00043 -21.51975 -20.66679 -18.69658 -17.84381 -17.04276 -16.48564 -16.28849 -15.59486 -15.04578 -14.76391 -14.42159 -14.20553 -13.85124 -13.56486 -13.41054 -13.12619 -12.99183 -12.77156 -12.60941 -12.10078 -11.80433 -11.55497 -11.09266 -11.06734 -10.86005 -10.65392 -10.60028 -10.44968 -10.13368 -10.08283 -9.67833 -9.61833 -9.50349 -9.15803 -9.10919 -8.52495 -8.00554 -6.95974 -5.93569 -2.96926 1.15267 1.23420 3.41951 3.52585 3.58879 3.60043 4.25390 4.49310 4.71018 4.82372 4.87070 4.93017 5.15553 5.28421 5.39763 5.57955 5.75676 5.91731 5.93017 6.03204 6.05548 6.10490 6.12655 6.26203 6.34382 6.38852 6.52954 6.59155 6.77869 6.81026 6.87639 6.91283 7.01987 7.25851 7.45225 7.65267 7.81736 7.87802 8.10455 8.18447 8.35460 9.15000 9.84537 10.32212 11.03884 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.004850 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.276350 B = 5771.475508 C = 6675.166039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.153 3.847 5 N -0.582 5.582 6 C -0.278 4.278 7 H 0.077 0.923 8 C 0.030 3.970 9 N -0.843 5.843 10 Si 0.847 3.153 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.286 1.286 14 C 0.135 3.865 15 C 0.120 3.880 16 H 0.108 0.892 17 O -0.543 6.543 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.151 4.151 21 C 0.081 3.919 22 F -0.146 7.146 23 C -0.150 4.150 24 C -0.089 4.089 25 H 0.077 0.923 26 H -0.010 1.010 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.014 0.986 34 H 0.254 0.746 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.360 0.640 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 -6.865 -6.635 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.121 4.121 3 C -0.194 4.194 4 C 0.028 3.972 5 N -0.301 5.301 6 C -0.405 4.405 7 H 0.094 0.906 8 C -0.170 4.170 9 N -0.484 5.484 10 Si 0.674 3.326 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.212 1.212 14 C 0.006 3.994 15 C 0.057 3.943 16 H 0.126 0.874 17 O -0.347 6.347 18 C -0.109 4.109 19 C -0.103 4.103 20 C -0.170 4.170 21 C 0.062 3.938 22 F -0.125 7.125 23 C -0.169 4.169 24 C -0.107 4.107 25 H 0.096 0.904 26 H 0.009 0.991 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.206 0.794 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.072 -6.870 -5.984 12.172 hybrid contribution 0.021 -0.418 0.151 0.445 sum 8.093 -7.288 -5.834 12.355 Atomic orbital electron populations 1.21740 0.93912 1.05790 0.95864 1.21442 0.98195 0.93837 0.98591 1.21751 0.98823 0.98208 1.00598 1.21361 0.92282 0.85083 0.98498 1.43935 1.30864 1.03565 1.51732 1.18930 1.07131 1.01129 1.13270 0.90564 1.24652 0.98974 0.94745 0.98673 1.70569 1.43608 1.02014 1.32175 0.87139 0.77841 0.78080 0.89508 1.21362 1.22032 1.21230 1.21271 0.94291 0.91469 0.92406 1.21926 0.88299 0.85473 0.98572 0.87391 1.86685 1.53167 1.59177 1.35707 1.21073 0.96069 0.96192 0.97582 1.20927 0.99360 0.91491 0.98568 1.21114 0.97171 1.00771 0.97903 1.17689 0.96067 0.85160 0.94911 1.91469 1.84702 1.60177 1.76154 1.21064 1.02080 0.91452 1.02327 1.20758 0.95819 0.98911 0.95202 0.90385 0.99127 0.90426 0.95477 0.94707 0.94688 0.92604 0.87997 0.96757 0.93604 0.94121 0.92828 0.79412 0.84785 0.85015 0.85076 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 7.78 37.16 0.29 -2.32 16 2 C -0.10 -2.05 3.17 -90.62 -0.29 -2.34 16 3 C -0.14 -2.46 9.13 37.15 0.34 -2.12 16 4 C 0.15 3.37 4.65 -4.04 -0.02 3.35 16 5 N -0.58 -12.97 1.96 -173.24 -0.34 -13.31 16 6 C -0.28 -6.95 7.88 -15.06 -0.12 -7.07 16 7 H 0.08 1.91 8.04 -52.49 -0.42 1.49 16 8 C 0.03 0.77 4.68 -17.43 -0.08 0.69 16 9 N -0.84 -21.61 7.43 55.49 0.41 -21.20 16 10 Si 0.85 20.25 29.69 -169.99 -5.05 15.20 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.13 2.47 5.35 -4.04 -0.02 2.45 16 15 C 0.12 1.97 3.48 -27.88 -0.10 1.87 16 16 H 0.11 1.98 8.05 -51.93 -0.42 1.56 16 17 O -0.54 -9.28 11.73 -35.23 -0.41 -9.69 16 18 C -0.11 -1.49 5.00 -104.62 -0.52 -2.01 16 19 C -0.09 -1.09 9.68 -39.59 -0.38 -1.47 16 20 C -0.15 -1.81 10.03 -39.51 -0.40 -2.21 16 21 C 0.08 1.02 7.30 -39.42 -0.29 0.73 16 22 F -0.15 -1.88 17.27 2.25 0.04 -1.84 16 23 C -0.15 -1.77 10.03 -39.51 -0.40 -2.17 16 24 C -0.09 -1.09 9.32 -39.59 -0.37 -1.46 16 25 H 0.08 1.87 6.21 -51.93 -0.32 1.55 16 26 H -0.01 -0.22 8.14 -51.93 -0.42 -0.64 16 27 H 0.08 1.96 5.47 -51.93 -0.28 1.67 16 28 H 0.03 0.54 8.01 -51.93 -0.42 0.12 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 2.57 5.19 -51.93 -0.27 2.30 16 33 H 0.01 0.29 6.78 -51.94 -0.35 -0.06 16 34 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 35 H 0.04 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.05 0.99 8.03 -51.93 -0.42 0.57 16 37 H 0.36 4.89 7.18 45.56 0.33 5.22 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.34 6.61 -52.49 -0.35 0.99 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -26.70 329.44 -8.16 -34.87 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.43 Total: 5.07 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.35 Total: -14.07 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.07 Total: -34.51 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.41 Total: -9.69 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.05 Total: 15.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.70 -8.16 -34.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112656442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.544 kcal (2) G-P(sol) polarization free energy of solvation -26.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds