Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46894 * 2 1 4 4 C 1.53005 * 109.46930 * 119.99493 * 2 1 3 5 5 N 1.46502 * 109.46708 * 171.70876 * 4 2 1 6 6 C 1.36929 * 119.99817 * 94.98885 * 5 4 2 7 7 H 1.08006 * 120.00437 * 342.98707 * 6 5 4 8 8 C 1.38819 * 119.99815 * 162.98445 * 6 5 4 9 9 N 1.31610 * 120.00018 * 349.41924 * 8 6 5 10 10 Si 1.86803 * 119.99791 * 169.41300 * 8 6 5 11 11 H 1.48495 * 109.47232 * 90.00167 * 10 8 6 12 12 H 1.48505 * 109.46923 * 210.00347 * 10 8 6 13 13 H 1.48498 * 109.47183 * 330.00111 * 10 8 6 14 14 C 1.46497 * 119.99805 * 274.98492 * 5 4 2 15 15 C 1.53001 * 109.47304 * 276.55185 * 14 5 4 16 16 H 1.09002 * 109.47199 * 306.61778 * 15 14 5 17 17 O 1.42897 * 109.47143 * 66.61672 * 15 14 5 18 18 C 1.50699 * 109.47416 * 186.61823 * 15 14 5 19 19 C 1.38247 * 119.97713 * 99.99703 * 18 15 14 20 20 C 1.38190 * 120.02619 * 180.02562 * 19 18 15 21 21 C 1.38459 * 119.97524 * 0.23019 * 20 19 18 22 22 F 1.35102 * 120.02394 * 179.73505 * 21 20 19 23 23 C 1.38460 * 119.94715 * 359.49582 * 21 20 19 24 24 C 1.38191 * 119.97286 * 0.52606 * 23 21 20 25 25 H 1.09006 * 109.47635 * 300.00210 * 1 2 3 26 26 H 1.09001 * 109.46926 * 60.00076 * 1 2 3 27 27 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47244 * 239.99917 * 2 1 3 29 29 H 1.08996 * 109.46815 * 186.67626 * 3 2 1 30 30 H 1.08997 * 109.46873 * 306.67683 * 3 2 1 31 31 H 1.09000 * 109.47278 * 66.67353 * 3 2 1 32 32 H 1.09000 * 109.46750 * 51.70769 * 4 2 1 33 33 H 1.09002 * 109.47062 * 291.70796 * 4 2 1 34 34 H 0.96999 * 119.99990 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47266 * 156.55130 * 14 5 4 36 36 H 1.09000 * 109.47140 * 36.55331 * 14 5 4 37 37 H 0.96696 * 114.00119 * 59.94922 * 17 15 14 38 38 H 1.08001 * 119.98048 * 0.02562 * 19 18 15 39 39 H 1.08002 * 120.01562 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.01093 * 180.25762 * 23 21 20 41 41 H 1.08009 * 119.98624 * 179.74759 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.4914 -0.8961 1.1539 6 6 4.3306 0.0159 1.7362 7 1 3.9573 0.9885 2.0212 8 6 5.6613 -0.3097 1.9604 9 7 6.0692 -1.5520 1.8100 10 14 6.8731 1.0154 2.4754 11 1 6.9045 1.1086 3.9571 12 1 8.2271 0.6705 1.9722 13 1 6.4510 2.3204 1.9062 14 6 4.0448 -2.0466 0.4355 15 6 4.0729 -3.2623 1.3641 16 1 4.5959 -3.0041 2.2849 17 8 2.7347 -3.6581 1.6712 18 6 4.7890 -4.3993 0.6817 19 6 6.1091 -4.6690 0.9909 20 6 6.7669 -5.7110 0.3654 21 6 6.1046 -6.4820 -0.5749 22 9 6.7483 -7.4976 -1.1909 23 6 4.7807 -6.2145 -0.8796 24 6 4.1252 -5.1717 -0.2532 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1234 1.4449 -0.1195 30 1 1.5823 1.9897 -0.8242 31 1 1.7774 1.9208 0.9437 32 1 1.5607 -1.6971 1.3266 33 1 1.8027 -0.1288 2.1331 34 1 6.9991 -1.7794 1.9662 35 1 5.0585 -1.8167 0.1072 36 1 3.4230 -2.2665 -0.4323 37 1 2.2091 -3.9017 0.8970 38 1 6.6265 -4.0651 1.7217 39 1 7.7983 -5.9214 0.6068 40 1 4.2619 -6.8179 -1.6099 41 1 3.0937 -4.9602 -0.4937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112656446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -57.705613 kcal Electronic energy + Delta-G solvation = -22819.320282 eV Core-core repulsion = 19421.116376 eV Total energy + Delta-G solvation = -3398.203907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.57557 -39.01008 -37.05351 -35.53185 -33.71727 -30.79342 -30.72171 -30.48285 -27.22630 -26.50655 -25.54439 -23.40604 -22.59418 -21.36078 -20.40579 -19.10379 -17.54700 -16.93937 -16.07506 -15.84006 -15.27448 -15.20079 -14.63038 -14.22512 -13.81609 -13.79734 -13.39115 -13.22080 -13.16371 -12.99544 -12.47126 -12.25184 -11.99366 -11.75885 -11.62973 -11.31680 -11.03981 -10.84188 -10.67965 -10.57719 -10.36296 -10.27046 -10.06977 -10.01425 -9.86192 -9.66932 -9.32398 -8.68185 -8.47252 -8.06968 -6.72326 -5.80493 -3.19489 1.59146 1.67761 3.35207 3.42680 3.43652 4.05448 4.45880 4.62313 5.11661 5.20433 5.27512 5.32306 5.40070 5.55044 5.63431 5.64631 5.75416 5.86281 5.97299 6.11249 6.25901 6.28437 6.34093 6.37168 6.44599 6.53324 6.54788 6.58946 6.64648 6.77132 6.79518 6.88302 7.07097 7.08615 7.16183 7.33629 7.51053 7.61918 7.85354 8.33724 8.52717 9.22516 9.82610 10.29387 11.23533 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.006155 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.881511 B = 4547.835302 C = 6046.660804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.134 4.134 4 C 0.152 3.848 5 N -0.589 5.589 6 C -0.228 4.228 7 H 0.072 0.928 8 C -0.010 4.010 9 N -0.919 5.919 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.159 3.841 15 C 0.131 3.869 16 H 0.146 0.854 17 O -0.567 6.567 18 C -0.087 4.087 19 C -0.061 4.061 20 C -0.160 4.160 21 C 0.073 3.927 22 F -0.152 7.152 23 C -0.159 4.159 24 C -0.101 4.101 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.004 0.996 37 H 0.348 0.652 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -4.786 -4.377 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.191 4.191 4 C 0.025 3.975 5 N -0.308 5.308 6 C -0.357 4.357 7 H 0.090 0.910 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.738 3.262 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 C 0.032 3.968 15 C 0.071 3.929 16 H 0.163 0.837 17 O -0.371 6.371 18 C -0.089 4.089 19 C -0.079 4.079 20 C -0.179 4.179 21 C 0.054 3.946 22 F -0.131 7.131 23 C -0.178 4.178 24 C -0.119 4.119 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.022 0.978 37 H 0.193 0.807 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.054 -4.700 -3.750 7.252 hybrid contribution 0.775 0.293 -0.539 0.989 sum -3.279 -4.407 -4.289 6.969 Atomic orbital electron populations 1.21795 0.96857 1.00720 1.00612 1.21764 0.93562 0.97326 1.01317 1.21718 1.02384 0.95521 0.99475 1.20920 0.85052 0.97457 0.94054 1.43947 0.99867 1.25639 1.61364 1.19397 0.90766 0.93882 1.31655 0.90981 1.24781 0.98062 0.96235 1.01393 1.69907 1.15521 1.15587 1.55871 0.86193 0.80746 0.81124 0.78111 1.21771 1.21773 1.20916 1.21314 0.99789 0.85889 0.89801 1.22495 0.79032 0.88849 1.02528 0.83660 1.86695 1.25429 1.89027 1.35939 1.21101 0.95170 0.96859 0.95749 1.21150 0.94162 0.94234 0.98352 1.21169 1.00750 0.97618 0.98339 1.17680 0.91610 0.88649 0.96648 1.91435 1.81852 1.57997 1.81772 1.20935 0.93363 1.00540 1.02948 1.20769 0.99813 0.94950 0.96366 0.93288 0.93857 0.93365 0.92358 0.91292 0.95020 0.93819 0.93576 0.93752 0.93829 0.87935 0.97793 0.80720 0.83682 0.85551 0.85712 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.18 37.16 0.34 -1.63 16 2 C -0.12 -2.01 3.10 -90.61 -0.28 -2.29 16 3 C -0.13 -2.30 8.53 37.16 0.32 -1.98 16 4 C 0.15 2.97 5.00 -4.04 -0.02 2.95 16 5 N -0.59 -13.25 2.40 -173.23 -0.42 -13.67 16 6 C -0.23 -5.64 8.42 -15.06 -0.13 -5.77 16 7 H 0.07 1.79 7.56 -52.48 -0.40 1.39 16 8 C -0.01 -0.25 5.15 -17.43 -0.09 -0.34 16 9 N -0.92 -22.70 7.32 55.49 0.41 -22.29 16 10 Si 0.91 20.63 29.57 -169.99 -5.03 15.60 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.16 3.42 4.57 -4.04 -0.02 3.40 16 15 C 0.13 2.67 2.73 -27.88 -0.08 2.59 16 16 H 0.15 3.54 6.21 -51.93 -0.32 3.22 16 17 O -0.57 -10.89 11.46 -35.23 -0.40 -11.29 16 18 C -0.09 -1.59 4.97 -104.62 -0.52 -2.11 16 19 C -0.06 -1.09 9.59 -39.60 -0.38 -1.47 16 20 C -0.16 -2.60 10.03 -39.52 -0.40 -2.99 16 21 C 0.07 1.17 7.30 -39.42 -0.29 0.89 16 22 F -0.15 -2.40 17.27 2.25 0.04 -2.36 16 23 C -0.16 -2.39 10.03 -39.52 -0.40 -2.78 16 24 C -0.10 -1.58 9.32 -39.60 -0.37 -1.95 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 29 H 0.07 1.36 7.08 -51.93 -0.37 0.99 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.05 0.88 6.49 -51.93 -0.34 0.54 16 33 H 0.04 0.90 7.96 -51.93 -0.41 0.49 16 34 H 0.25 6.12 8.14 -40.82 -0.33 5.79 16 35 H 0.10 2.51 5.96 -51.93 -0.31 2.20 16 36 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 37 H 0.35 5.39 7.50 45.56 0.34 5.73 16 38 H 0.15 2.74 7.17 -52.49 -0.38 2.36 16 39 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 1.63 6.78 -52.48 -0.36 1.28 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -25.37 330.94 -8.17 -33.54 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.46 Total: 8.98 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.30 Total: -13.50 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.01 Total: -35.96 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.40 Total: -11.29 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -25.37 -8.17 -33.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112656446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.166 kcal (2) G-P(sol) polarization free energy of solvation -25.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds