Wall clock time and date at job start Tue Mar 31 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47115 * 2 1 4 4 C 1.52998 * 109.46715 * 240.00078 * 2 1 3 5 5 C 1.50694 * 109.46755 * 120.00151 * 2 1 3 6 6 C 1.38392 * 119.85158 * 239.71789 * 5 2 1 7 7 C 1.37931 * 120.14544 * 180.27452 * 6 5 2 8 8 C 1.39611 * 119.85513 * 0.02976 * 7 6 5 9 9 C 1.47964 * 120.14589 * 179.97438 * 8 7 6 10 10 C 1.39898 * 119.44945 * 359.75590 * 9 8 7 11 11 C 1.36607 * 119.46506 * 179.72510 * 10 9 8 12 12 C 1.41304 * 118.41235 * 0.52932 * 11 10 9 13 13 C 1.41050 * 120.55393 * 179.75082 * 12 11 10 14 14 H 1.08000 * 120.00362 * 155.65924 * 13 12 11 15 15 C 1.40033 * 120.00112 * 335.66068 * 13 12 11 16 16 N 1.30791 * 119.99616 * 343.26455 * 15 13 12 17 17 Si 1.86798 * 120.00081 * 163.26978 * 15 13 12 18 18 H 1.48497 * 109.47370 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47145 * 120.00180 * 17 15 13 20 20 H 1.48507 * 109.46961 * 239.99929 * 17 15 13 21 21 C 1.40945 * 118.89476 * 359.73124 * 12 11 10 22 22 N 1.31274 * 120.40039 * 359.97438 * 21 12 11 23 23 C 1.39608 * 119.70837 * 359.97438 * 8 7 6 24 24 C 1.37940 * 119.85153 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.47151 * 300.00411 * 1 2 3 26 26 H 1.09005 * 109.47321 * 59.99663 * 1 2 3 27 27 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47085 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47305 * 299.99814 * 3 2 1 30 30 H 1.09001 * 109.47447 * 59.99770 * 3 2 1 31 31 H 1.09001 * 109.47008 * 299.99847 * 4 2 1 32 32 H 1.08996 * 109.47577 * 59.99915 * 4 2 1 33 33 H 1.09000 * 109.46885 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.92480 * 0.25841 * 6 5 2 35 35 H 1.08009 * 120.07270 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.26871 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.79471 * 180.23970 * 11 10 9 38 38 H 0.97000 * 119.99591 * 180.02562 * 16 15 13 39 39 H 1.07995 * 119.80198 * 179.97438 * 21 12 11 40 40 H 1.08001 * 120.07093 * 180.02562 * 23 8 7 41 41 H 1.08001 * 119.92234 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 2.8325 -0.0367 2.1365 7 6 3.3002 -0.6827 3.2618 8 6 2.9651 -2.0194 3.4855 9 6 3.4638 -2.7189 4.6903 10 6 4.2763 -2.0311 5.5980 11 6 4.7322 -2.6749 6.7133 12 6 4.3712 -4.0277 6.9035 13 6 4.8211 -4.7374 8.0364 14 1 4.2662 -5.5924 8.3936 15 6 5.9872 -4.3335 8.6981 16 7 6.8306 -3.5292 8.1045 17 14 6.3383 -4.9436 10.4284 18 1 5.2367 -5.8351 10.8720 19 1 7.6187 -5.6957 10.4378 20 1 6.4384 -3.7844 11.3512 21 6 3.5537 -4.6561 5.9425 22 7 3.1360 -3.9925 4.8897 23 6 2.1576 -2.6933 2.5675 24 6 1.6956 -2.0352 1.4467 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 3.0915 0.9972 1.9618 35 1 3.9243 -0.1556 3.9684 36 1 4.5377 -0.9984 5.4206 37 1 5.3575 -2.1635 7.4301 38 1 7.6386 -3.2497 8.5628 39 1 3.2693 -5.6897 6.0731 40 1 1.8944 -3.7273 2.7350 41 1 1.0705 -2.5552 0.7359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117059537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:43 Heat of formation + Delta-G solvation = 24.273993 kcal Electronic energy + Delta-G solvation = -20642.344743 eV Core-core repulsion = 17678.464964 eV Total energy + Delta-G solvation = -2963.879780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52346 -38.29789 -36.00410 -34.20268 -31.15417 -30.99806 -30.31587 -28.62750 -27.29278 -27.22893 -25.48594 -22.86119 -22.47198 -20.75845 -20.71481 -18.91571 -17.51986 -16.70595 -15.58463 -15.19947 -14.87531 -14.45841 -14.22024 -13.97761 -13.67553 -13.30122 -13.20368 -12.88521 -12.84933 -12.44871 -12.29343 -11.94362 -11.76076 -11.70644 -11.65414 -11.47241 -11.33574 -11.09914 -11.06475 -10.87817 -10.69214 -10.27494 -10.20571 -9.90144 -9.55609 -8.55852 -8.39178 -8.35242 -8.10101 -7.26470 -6.99129 -4.57867 1.59189 1.99293 2.65188 2.91472 2.94163 2.98784 3.14573 3.72016 4.22409 4.63714 4.74464 4.84624 5.05504 5.37119 5.40391 5.45956 5.54349 5.60092 5.60966 5.63433 5.75847 5.84504 5.86819 5.90382 6.01682 6.05820 6.11679 6.14320 6.31712 6.32962 6.47482 6.53998 6.63890 6.72478 6.80115 6.88058 7.01575 7.10300 7.15739 7.34098 7.51378 7.70244 7.76734 7.86793 8.29566 8.49021 8.59033 9.53692 9.86009 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046381 B = 0.003125 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.553416 B = 8958.877405 C = 9311.941632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.117 4.117 7 C -0.134 4.134 8 C 0.017 3.983 9 C -0.008 4.008 10 C -0.122 4.122 11 C -0.144 4.144 12 C 0.068 3.932 13 C -0.434 4.434 14 H 0.087 0.913 15 C 0.071 3.929 16 N -0.777 5.777 17 Si 0.916 3.084 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.017 4.017 22 N -0.448 5.448 23 C -0.112 4.112 24 C -0.114 4.114 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.286 0.714 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 6.758 -9.627 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.194 4.194 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.153 4.153 8 C 0.016 3.984 9 C -0.141 4.141 10 C -0.142 4.142 11 C -0.169 4.169 12 C 0.064 3.936 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.400 5.400 17 Si 0.739 3.261 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.182 4.182 22 N -0.156 5.156 23 C -0.130 4.130 24 C -0.132 4.132 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.779 6.477 -10.206 13.398 hybrid contribution 0.978 0.160 1.505 1.802 sum -4.800 6.637 -8.701 11.950 Atomic orbital electron populations 1.21878 0.94254 1.01899 1.01346 1.19398 0.95271 0.94739 0.93080 1.21939 1.01173 0.95322 1.01444 1.21877 1.01228 1.00188 0.96098 1.19599 1.00273 0.94341 0.96261 1.20905 0.98660 0.99439 0.94532 1.21179 1.01673 0.94421 0.97996 1.18698 0.94534 0.92322 0.92804 1.18825 1.06373 0.91685 0.97253 1.21319 0.98086 0.98985 0.95818 1.21340 1.02939 0.94500 0.98138 1.18622 0.90606 0.92139 0.92266 1.19713 1.06320 1.11860 1.08367 0.89465 1.26099 0.95185 0.93641 1.00000 1.69789 1.08016 1.25229 1.36996 0.86123 0.79395 0.79693 0.80862 1.18018 1.19634 1.19414 1.22458 1.05070 0.98597 0.92117 1.66920 1.19797 1.07630 1.21218 1.21230 0.97885 1.00323 0.93609 1.20788 1.00642 0.94132 0.97656 0.92614 0.92911 0.92521 0.92350 0.92908 0.92362 0.92520 0.92905 0.92594 0.86482 0.86375 0.88084 0.85540 0.90253 0.85339 0.85573 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 2 C -0.02 -0.28 0.85 -155.67 -0.13 -0.42 16 3 C -0.14 -1.43 7.13 37.15 0.26 -1.16 16 4 C -0.14 -1.44 8.29 37.16 0.31 -1.13 16 5 C -0.10 -1.53 4.77 -104.51 -0.50 -2.03 16 6 C -0.12 -1.81 8.96 -39.64 -0.36 -2.17 16 7 C -0.13 -2.41 9.42 -39.18 -0.37 -2.77 16 8 C 0.02 0.36 5.88 -104.89 -0.62 -0.26 16 9 C -0.01 -0.18 6.74 -82.75 -0.56 -0.74 16 10 C -0.12 -2.87 9.38 -39.55 -0.37 -3.24 16 11 C -0.14 -3.64 8.74 -39.01 -0.34 -3.98 16 12 C 0.07 1.76 5.59 -106.64 -0.60 1.17 16 13 C -0.43 -10.76 9.07 -37.84 -0.34 -11.11 16 14 H 0.09 2.04 7.90 -52.49 -0.41 1.63 16 15 C 0.07 1.66 5.19 -17.32 -0.09 1.57 16 16 N -0.78 -18.79 10.91 55.55 0.61 -18.18 16 17 Si 0.92 17.28 29.59 -169.99 -5.03 12.25 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 21 C -0.02 -0.43 10.97 -16.77 -0.18 -0.61 16 22 N -0.45 -11.08 9.39 -9.10 -0.09 -11.17 16 23 C -0.11 -2.11 9.57 -39.18 -0.38 -2.49 16 24 C -0.11 -1.81 8.69 -39.64 -0.34 -2.15 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 28 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 31 H 0.06 0.60 7.38 -51.93 -0.38 0.21 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 1.52 5.87 -52.49 -0.31 1.21 16 35 H 0.12 2.01 6.15 -52.48 -0.32 1.69 16 36 H 0.10 2.10 6.15 -52.49 -0.32 1.77 16 37 H 0.13 3.21 6.20 -52.49 -0.33 2.89 16 38 H 0.29 6.21 8.30 -40.82 -0.34 5.88 16 39 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 40 H 0.13 2.45 7.52 -52.49 -0.39 2.06 16 41 H 0.11 1.51 7.08 -52.49 -0.37 1.14 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -26.82 332.41 -9.47 -36.29 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.68 Total: 8.42 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -4.29 Total: -32.62 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.52 Total: -29.35 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.82 -9.47 -36.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117059537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.563 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds