Wall clock time and date at job start Tue Mar 31 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47115 * 2 1 4 4 C 1.52998 * 109.46715 * 240.00078 * 2 1 3 5 5 C 1.50694 * 109.46755 * 120.00151 * 2 1 3 6 6 C 1.38392 * 119.85158 * 239.71789 * 5 2 1 7 7 C 1.37931 * 120.14544 * 180.27452 * 6 5 2 8 8 C 1.39611 * 119.85513 * 0.02976 * 7 6 5 9 9 C 1.47964 * 120.14589 * 179.97438 * 8 7 6 10 10 C 1.39898 * 119.44945 * 359.75590 * 9 8 7 11 11 C 1.36607 * 119.46506 * 179.72510 * 10 9 8 12 12 C 1.41304 * 118.41235 * 0.52932 * 11 10 9 13 13 C 1.41050 * 120.55393 * 179.75082 * 12 11 10 14 14 H 1.08000 * 120.00362 * 155.65924 * 13 12 11 15 15 C 1.40033 * 120.00112 * 335.66068 * 13 12 11 16 16 N 1.30791 * 119.99616 * 343.26455 * 15 13 12 17 17 Si 1.86798 * 120.00081 * 163.26978 * 15 13 12 18 18 H 1.48497 * 109.47370 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47145 * 120.00180 * 17 15 13 20 20 H 1.48507 * 109.46961 * 239.99929 * 17 15 13 21 21 C 1.40945 * 118.89476 * 359.73124 * 12 11 10 22 22 N 1.31274 * 120.40039 * 359.97438 * 21 12 11 23 23 C 1.39608 * 119.70837 * 359.97438 * 8 7 6 24 24 C 1.37940 * 119.85153 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.47151 * 300.00411 * 1 2 3 26 26 H 1.09005 * 109.47321 * 59.99663 * 1 2 3 27 27 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47085 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47305 * 299.99814 * 3 2 1 30 30 H 1.09001 * 109.47447 * 59.99770 * 3 2 1 31 31 H 1.09001 * 109.47008 * 299.99847 * 4 2 1 32 32 H 1.08996 * 109.47577 * 59.99915 * 4 2 1 33 33 H 1.09000 * 109.46885 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.92480 * 0.25841 * 6 5 2 35 35 H 1.08009 * 120.07270 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.26871 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.79471 * 180.23970 * 11 10 9 38 38 H 0.97000 * 119.99591 * 180.02562 * 16 15 13 39 39 H 1.07995 * 119.80198 * 179.97438 * 21 12 11 40 40 H 1.08001 * 120.07093 * 180.02562 * 23 8 7 41 41 H 1.08001 * 119.92234 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 2.8325 -0.0367 2.1365 7 6 3.3002 -0.6827 3.2618 8 6 2.9651 -2.0194 3.4855 9 6 3.4638 -2.7189 4.6903 10 6 4.2763 -2.0311 5.5980 11 6 4.7322 -2.6749 6.7133 12 6 4.3712 -4.0277 6.9035 13 6 4.8211 -4.7374 8.0364 14 1 4.2662 -5.5924 8.3936 15 6 5.9872 -4.3335 8.6981 16 7 6.8306 -3.5292 8.1045 17 14 6.3383 -4.9436 10.4284 18 1 5.2367 -5.8351 10.8720 19 1 7.6187 -5.6957 10.4378 20 1 6.4384 -3.7844 11.3512 21 6 3.5537 -4.6561 5.9425 22 7 3.1360 -3.9925 4.8897 23 6 2.1576 -2.6933 2.5675 24 6 1.6956 -2.0352 1.4467 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 3.0915 0.9972 1.9618 35 1 3.9243 -0.1556 3.9684 36 1 4.5377 -0.9984 5.4206 37 1 5.3575 -2.1635 7.4301 38 1 7.6386 -3.2497 8.5628 39 1 3.2693 -5.6897 6.0731 40 1 1.8944 -3.7273 2.7350 41 1 1.0705 -2.5552 0.7359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117059537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:43 Heat of formation + Delta-G solvation = 13.305012 kcal Electronic energy + Delta-G solvation = -20642.820394 eV Core-core repulsion = 17678.464964 eV Total energy + Delta-G solvation = -2964.355430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90524 -39.94673 -37.22321 -35.94735 -32.80733 -32.70961 -31.78038 -30.20445 -28.15161 -28.02766 -27.19986 -24.43330 -24.07959 -22.31647 -22.29806 -20.03446 -19.35261 -18.16769 -17.27352 -16.63856 -16.38361 -15.86580 -15.40417 -15.19342 -15.08810 -14.70308 -14.55341 -14.43977 -14.16450 -13.83367 -13.57472 -13.50421 -13.19922 -13.04403 -12.79343 -12.73314 -12.54150 -12.47679 -12.24965 -12.16892 -11.77053 -11.71054 -11.42764 -11.29634 -11.25171 -10.29171 -10.15465 -9.97079 -9.73509 -8.95647 -8.73202 -6.45761 0.06992 0.63080 0.94719 1.12698 1.37911 1.53164 1.55516 2.14430 2.59574 3.06165 3.72003 3.74560 3.79713 3.92256 4.15244 4.20591 4.25328 4.37384 4.45884 4.52179 4.67859 4.73082 4.79399 4.85476 4.94460 4.95840 4.96951 5.07054 5.09245 5.09775 5.09894 5.23076 5.25323 5.29420 5.33386 5.45403 5.51745 5.58891 5.76069 5.80075 5.83450 5.93462 6.04945 6.24567 6.42091 6.64527 6.71264 7.64649 8.13788 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046381 B = 0.003125 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.553416 B = 8958.877405 C = 9311.941632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.088 4.088 6 C -0.116 4.116 7 C -0.135 4.135 8 C -0.023 4.023 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.161 4.161 12 C 0.041 3.959 13 C -0.465 4.465 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.809 5.809 17 Si 0.993 3.007 18 H -0.254 1.254 19 H -0.263 1.263 20 H -0.262 1.262 21 C -0.038 4.038 22 N -0.462 5.462 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.296 0.704 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 8.412 -11.120 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.154 4.154 8 C -0.024 4.024 9 C -0.146 4.146 10 C -0.149 4.149 11 C -0.186 4.186 12 C 0.037 3.963 13 C -0.493 4.493 14 H 0.109 0.891 15 C -0.184 4.184 16 N -0.433 5.433 17 Si 0.812 3.188 18 H -0.177 1.177 19 H -0.188 1.188 20 H -0.186 1.186 21 C -0.202 4.202 22 N -0.170 5.170 23 C -0.142 4.142 24 C -0.131 4.131 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.156 0.844 40 H 0.129 0.871 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.341 8.122 -11.714 15.601 hybrid contribution 1.060 -0.219 1.707 2.022 sum -5.281 7.903 -10.007 13.801 Atomic orbital electron populations 1.21879 0.93168 1.02084 1.02200 1.19518 0.96084 0.95402 0.91619 1.21954 1.01185 0.94278 1.02551 1.21881 1.00810 1.00271 0.96404 1.20105 0.98052 0.93803 0.96877 1.21256 0.97967 1.00741 0.93446 1.21333 1.01595 0.93440 0.99041 1.18741 0.97141 0.93704 0.92803 1.19426 1.05475 0.91464 0.98234 1.21579 0.97872 1.00158 0.95301 1.21390 1.03629 0.94698 0.98875 1.18919 0.91480 0.92759 0.93170 1.19969 1.07523 1.12699 1.09129 0.89096 1.26986 0.94240 0.93446 1.03767 1.69821 1.08641 1.26047 1.38761 0.84990 0.79299 0.79243 0.75258 1.17725 1.18786 1.18638 1.22683 1.05789 0.99283 0.92441 1.66974 1.20383 1.08381 1.21238 1.21236 0.98302 0.99956 0.94671 1.21020 1.00397 0.94802 0.96849 0.93200 0.90707 0.92734 0.92400 0.90897 0.92318 0.92748 0.90682 0.93290 0.83530 0.85869 0.85678 0.86270 0.89282 0.84358 0.87074 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.29 71.98 0.60 -1.73 16 2 C -0.03 -0.50 0.85 -52.93 -0.05 -0.55 16 3 C -0.14 -2.29 7.13 71.98 0.51 -1.78 16 4 C -0.14 -2.37 8.29 71.98 0.60 -1.77 16 5 C -0.09 -2.34 4.77 -19.79 -0.09 -2.44 16 6 C -0.12 -3.31 8.96 22.23 0.20 -3.11 16 7 C -0.14 -4.74 9.42 22.53 0.21 -4.53 16 8 C -0.02 -0.96 5.88 -20.04 -0.12 -1.08 16 9 C -0.01 -0.54 6.74 41.95 0.28 -0.26 16 10 C -0.13 -6.28 9.38 22.29 0.21 -6.07 16 11 C -0.16 -8.47 8.74 22.64 0.20 -8.27 16 12 C 0.04 2.23 5.59 -21.17 -0.12 2.11 16 13 C -0.46 -23.93 9.07 23.40 0.21 -23.72 16 14 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 15 C 0.03 1.58 5.19 85.28 0.44 2.02 16 16 N -0.81 -40.01 10.91 21.84 0.24 -39.77 16 17 Si 0.99 35.51 29.59 68.60 2.03 37.54 16 18 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 20 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 21 C -0.04 -2.00 10.97 85.44 0.94 -1.06 16 22 N -0.46 -23.87 9.39 -182.71 -1.72 -25.59 16 23 C -0.12 -4.67 9.57 22.53 0.22 -4.46 16 24 C -0.11 -3.39 8.69 22.23 0.19 -3.20 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.05 0.96 7.37 -2.39 -0.02 0.94 16 28 H 0.06 0.95 7.50 -2.39 -0.02 0.93 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.95 7.51 -2.39 -0.02 0.93 16 31 H 0.05 0.97 7.38 -2.39 -0.02 0.95 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.15 3.30 5.87 -2.91 -0.02 3.28 16 35 H 0.12 4.09 6.15 -2.91 -0.02 4.08 16 36 H 0.13 5.27 6.15 -2.91 -0.02 5.25 16 37 H 0.12 6.34 6.20 -2.91 -0.02 6.32 16 38 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 39 H 0.14 6.66 8.06 -2.91 -0.02 6.64 16 40 H 0.11 4.48 7.52 -2.91 -0.02 4.46 16 41 H 0.13 3.36 7.08 -2.91 -0.02 3.34 16 Total: -1.00 -60.13 332.41 6.01 -54.12 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 1.02 Total: 33.60 kcal Atomic # 6 Polarization: -64.33 SS G_CDS: 4.43 Total: -59.89 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -1.48 Total: -65.36 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -60.13 6.01 -54.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117059537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.427 kcal (2) G-P(sol) polarization free energy of solvation -60.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds