Wall clock time and date at job start Tue Mar 31 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.53002 * 109.47012 * 240.00005 * 2 1 3 5 5 C 1.50701 * 109.46956 * 120.00266 * 2 1 3 6 6 C 1.38391 * 119.85192 * 59.99874 * 5 2 1 7 7 C 1.37929 * 120.14463 * 179.69894 * 6 5 2 8 8 C 1.39627 * 119.85339 * 0.27882 * 7 6 5 9 9 C 1.47968 * 120.14833 * 180.02562 * 8 7 6 10 10 C 1.40259 * 120.34626 * 179.72132 * 9 8 7 11 11 C 1.36682 * 118.60785 * 179.79711 * 10 9 8 12 12 C 1.40881 * 119.25051 * 0.45801 * 11 10 9 13 13 C 1.40990 * 119.68244 * 179.76312 * 12 11 10 14 14 H 1.08004 * 119.99604 * 0.02562 * 13 12 11 15 15 C 1.40104 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.30709 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99762 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46802 * 60.00613 * 17 15 13 19 19 H 1.48500 * 109.46867 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47291 * 300.00344 * 17 15 13 21 21 N 1.33776 * 120.63636 * 359.78442 * 12 11 10 22 22 C 1.31201 * 121.50743 * 359.97438 * 21 12 11 23 23 C 1.39624 * 119.70709 * 359.97438 * 8 7 6 24 24 C 1.37932 * 119.84889 * 359.97438 * 23 8 7 25 25 H 1.09002 * 109.47256 * 299.99794 * 1 2 3 26 26 H 1.09008 * 109.46949 * 59.99861 * 1 2 3 27 27 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46590 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47024 * 299.99930 * 3 2 1 30 30 H 1.08994 * 109.47008 * 60.00241 * 3 2 1 31 31 H 1.09004 * 109.47571 * 300.00090 * 4 2 1 32 32 H 1.09008 * 109.47154 * 60.00260 * 4 2 1 33 33 H 1.09004 * 109.47225 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.93182 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.07459 * 180.25550 * 7 6 5 36 36 H 1.08002 * 120.69631 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.37999 * 180.22408 * 11 10 9 38 38 H 0.96998 * 120.00004 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.65204 * 179.97438 * 22 21 12 40 40 H 1.07996 * 120.07817 * 179.97438 * 23 8 7 41 41 H 1.08008 * 119.92347 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6960 -2.0354 1.4463 7 6 2.1575 -2.6934 2.5673 8 6 2.9609 -2.0180 3.4882 9 6 3.4600 -2.7176 4.6927 10 6 4.2720 -2.0448 5.6175 11 6 4.7098 -2.7241 6.7199 12 6 4.3424 -4.0738 6.8876 13 6 4.7930 -4.7846 8.0188 14 1 5.4164 -4.2940 8.7517 15 6 4.4322 -6.1272 8.1919 16 7 3.6782 -6.7210 7.3046 17 14 5.0298 -7.0692 9.6903 18 1 4.5367 -6.4034 10.9226 19 1 4.5137 -8.4606 9.6385 20 1 6.5146 -7.0925 9.7006 21 7 3.5705 -4.6876 5.9837 22 6 3.1312 -4.0605 4.9183 23 6 3.2920 -0.6797 3.2670 24 6 2.8246 -0.0339 2.1413 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 1.0746 -2.5568 0.7333 35 1 1.8978 -3.7286 2.7326 36 1 4.5426 -1.0106 5.4638 37 1 5.3334 -2.2329 7.4521 38 1 3.4286 -7.6507 7.4243 39 1 2.5100 -4.5854 4.2076 40 1 3.9126 -0.1514 3.9756 41 1 3.0804 1.0012 1.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117064190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:22 Heat of formation + Delta-G solvation = 33.791222 kcal Electronic energy + Delta-G solvation = -20658.922531 eV Core-core repulsion = 17695.455449 eV Total energy + Delta-G solvation = -2963.467082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51995 -38.20099 -36.05125 -33.79204 -31.36138 -30.97612 -30.27642 -28.39916 -27.32066 -27.23226 -25.52542 -22.78085 -22.61928 -20.74671 -20.59474 -18.92911 -17.61840 -16.55841 -15.69970 -14.93880 -14.83497 -14.57371 -14.22357 -13.92121 -13.64725 -13.37214 -13.00991 -12.88089 -12.71907 -12.37705 -12.34892 -11.91111 -11.86080 -11.78622 -11.67853 -11.27182 -11.20583 -11.01898 -10.91984 -10.89829 -10.62900 -10.27263 -10.17626 -9.96093 -9.60185 -8.72530 -8.41548 -8.24075 -7.67899 -7.13880 -6.57906 -4.62821 1.62245 1.96612 2.76847 2.98908 3.00759 3.02212 3.16943 3.80513 4.32275 4.72581 4.74980 4.84101 5.05451 5.40251 5.42327 5.44206 5.55026 5.59895 5.69577 5.75063 5.82429 5.84267 5.85203 5.86300 5.96804 6.03385 6.08958 6.10744 6.16077 6.32289 6.32533 6.49804 6.61728 6.68815 6.73457 6.92752 6.99959 7.09094 7.10778 7.28342 7.47275 7.63625 7.76727 7.90273 8.06005 8.46226 8.75719 9.96025 10.12043 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045436 B = 0.003148 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.102681 B = 8891.020260 C = 9316.046670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.117 4.117 6 C -0.102 4.102 7 C -0.145 4.145 8 C 0.030 3.970 9 C -0.277 4.277 10 C -0.036 4.036 11 C -0.273 4.273 12 C 0.252 3.748 13 C -0.409 4.409 14 H 0.087 0.913 15 C 0.063 3.937 16 N -0.700 5.700 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.489 5.489 22 C 0.156 3.844 23 C -0.148 4.148 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.278 0.722 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 8.535 -10.365 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 C -0.198 4.198 4 C -0.194 4.194 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.164 4.164 8 C 0.029 3.971 9 C -0.282 4.282 10 C -0.059 4.059 11 C -0.295 4.295 12 C 0.129 3.871 13 C -0.438 4.438 14 H 0.105 0.895 15 C -0.164 4.164 16 N -0.320 5.320 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.200 5.200 22 C -0.013 4.013 23 C -0.167 4.167 24 C -0.127 4.127 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.672 7.418 -10.191 13.129 hybrid contribution 0.496 0.482 0.527 0.869 sum -3.176 7.900 -9.664 12.880 Atomic orbital electron populations 1.21880 0.94329 1.01864 1.01305 1.19376 0.95197 0.94676 0.93103 1.21934 1.01111 0.95392 1.01396 1.21880 1.01181 1.00174 0.96139 1.19521 1.01300 0.94390 0.96535 1.20719 0.99916 0.94108 0.97279 1.21149 1.00279 0.99952 0.94975 1.18869 0.92965 0.92440 0.92793 1.19072 1.13149 0.96864 0.99163 1.20658 0.94562 0.97365 0.93328 1.21433 1.10017 0.97247 1.00794 1.18666 0.88289 0.88537 0.91635 1.19756 1.24700 0.95062 1.04317 0.89465 1.26196 0.94235 0.98301 0.97693 1.70108 1.20521 1.11246 1.30103 0.86302 0.80188 0.78583 0.81375 1.18704 1.19974 1.18709 1.68803 1.13502 1.35408 1.02327 1.22778 0.94207 0.89944 0.94375 1.21135 1.02576 0.94781 0.98173 1.20925 0.98181 0.99236 0.94381 0.92636 0.92965 0.92550 0.92416 0.92944 0.92410 0.92547 0.92964 0.92638 0.87203 0.86393 0.88355 0.88164 0.91104 0.86018 0.86780 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.28 37.16 0.31 -1.11 16 2 C -0.02 -0.27 0.85 -155.66 -0.13 -0.40 16 3 C -0.14 -1.42 7.13 37.16 0.26 -1.15 16 4 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 5 C -0.12 -1.69 4.77 -104.51 -0.50 -2.19 16 6 C -0.10 -1.57 8.69 -39.64 -0.34 -1.91 16 7 C -0.15 -2.58 9.44 -39.18 -0.37 -2.95 16 8 C 0.03 0.60 5.88 -104.87 -0.62 -0.02 16 9 C -0.28 -6.25 5.92 -104.46 -0.62 -6.87 16 10 C -0.04 -0.81 9.46 -39.38 -0.37 -1.18 16 11 C -0.27 -6.58 9.76 -39.14 -0.38 -6.96 16 12 C 0.25 6.75 6.55 -84.98 -0.56 6.19 16 13 C -0.41 -10.58 9.12 -37.84 -0.35 -10.92 16 14 H 0.09 2.08 7.85 -52.48 -0.41 1.67 16 15 C 0.06 1.55 5.50 -17.33 -0.10 1.45 16 16 N -0.70 -18.04 11.44 55.55 0.64 -17.40 16 17 Si 0.91 17.79 29.56 -169.99 -5.03 12.76 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 19 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 N -0.49 -13.30 7.83 -10.84 -0.08 -13.39 16 22 C 0.16 3.78 10.60 -17.13 -0.18 3.60 16 23 C -0.15 -2.60 9.44 -39.18 -0.37 -2.97 16 24 C -0.11 -1.66 8.96 -39.64 -0.36 -2.02 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.59 7.38 -51.93 -0.38 0.20 16 28 H 0.06 0.58 7.52 -51.93 -0.39 0.19 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 31 H 0.06 0.59 7.38 -51.93 -0.38 0.20 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.45 7.08 -52.49 -0.37 1.08 16 35 H 0.12 2.02 6.22 -52.49 -0.33 1.69 16 36 H 0.10 1.91 6.30 -52.49 -0.33 1.58 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.12 2.66 6.21 -52.49 -0.33 2.33 16 40 H 0.11 1.90 6.25 -52.49 -0.33 1.57 16 41 H 0.11 1.48 5.87 -52.48 -0.31 1.17 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -27.98 331.41 -9.46 -37.43 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.62 Total: 6.12 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -4.36 Total: -30.52 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.55 Total: -30.79 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.98 -9.46 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117064190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.226 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds