Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.53002 * 109.47012 * 240.00005 * 2 1 3 5 5 C 1.50701 * 109.46956 * 120.00266 * 2 1 3 6 6 C 1.38391 * 119.85192 * 59.99874 * 5 2 1 7 7 C 1.37929 * 120.14463 * 179.69894 * 6 5 2 8 8 C 1.39627 * 119.85339 * 0.27882 * 7 6 5 9 9 C 1.47968 * 120.14833 * 180.02562 * 8 7 6 10 10 C 1.40259 * 120.34626 * 179.72132 * 9 8 7 11 11 C 1.36682 * 118.60785 * 179.79711 * 10 9 8 12 12 C 1.40881 * 119.25051 * 0.45801 * 11 10 9 13 13 C 1.40990 * 119.68244 * 179.76312 * 12 11 10 14 14 H 1.08004 * 119.99604 * 0.02562 * 13 12 11 15 15 C 1.40104 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.30709 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99762 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46802 * 60.00613 * 17 15 13 19 19 H 1.48500 * 109.46867 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47291 * 300.00344 * 17 15 13 21 21 N 1.33776 * 120.63636 * 359.78442 * 12 11 10 22 22 C 1.31201 * 121.50743 * 359.97438 * 21 12 11 23 23 C 1.39624 * 119.70709 * 359.97438 * 8 7 6 24 24 C 1.37932 * 119.84889 * 359.97438 * 23 8 7 25 25 H 1.09002 * 109.47256 * 299.99794 * 1 2 3 26 26 H 1.09008 * 109.46949 * 59.99861 * 1 2 3 27 27 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46590 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47024 * 299.99930 * 3 2 1 30 30 H 1.08994 * 109.47008 * 60.00241 * 3 2 1 31 31 H 1.09004 * 109.47571 * 300.00090 * 4 2 1 32 32 H 1.09008 * 109.47154 * 60.00260 * 4 2 1 33 33 H 1.09004 * 109.47225 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.93182 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.07459 * 180.25550 * 7 6 5 36 36 H 1.08002 * 120.69631 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.37999 * 180.22408 * 11 10 9 38 38 H 0.96998 * 120.00004 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.65204 * 179.97438 * 22 21 12 40 40 H 1.07996 * 120.07817 * 179.97438 * 23 8 7 41 41 H 1.08008 * 119.92347 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6960 -2.0354 1.4463 7 6 2.1575 -2.6934 2.5673 8 6 2.9609 -2.0180 3.4882 9 6 3.4600 -2.7176 4.6927 10 6 4.2720 -2.0448 5.6175 11 6 4.7098 -2.7241 6.7199 12 6 4.3424 -4.0738 6.8876 13 6 4.7930 -4.7846 8.0188 14 1 5.4164 -4.2940 8.7517 15 6 4.4322 -6.1272 8.1919 16 7 3.6782 -6.7210 7.3046 17 14 5.0298 -7.0692 9.6903 18 1 4.5367 -6.4034 10.9226 19 1 4.5137 -8.4606 9.6385 20 1 6.5146 -7.0925 9.7006 21 7 3.5705 -4.6876 5.9837 22 6 3.1312 -4.0605 4.9183 23 6 3.2920 -0.6797 3.2670 24 6 2.8246 -0.0339 2.1413 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 1.0746 -2.5568 0.7333 35 1 1.8978 -3.7286 2.7326 36 1 4.5426 -1.0106 5.4638 37 1 5.3334 -2.2329 7.4521 38 1 3.4286 -7.6507 7.4243 39 1 2.5100 -4.5854 4.2076 40 1 3.9126 -0.1514 3.9756 41 1 3.0804 1.0012 1.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117064190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = 21.743932 kcal Electronic energy + Delta-G solvation = -20659.444941 eV Core-core repulsion = 17695.455449 eV Total energy + Delta-G solvation = -2963.989491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85788 -39.86114 -37.25614 -35.54115 -33.02297 -32.57814 -31.76756 -29.97729 -28.18198 -28.03155 -27.21296 -24.36928 -24.16497 -22.27665 -22.14259 -20.05697 -19.42140 -17.93469 -17.40454 -16.38125 -16.25682 -16.02620 -15.36664 -15.07804 -15.07169 -14.68993 -14.39108 -14.36500 -14.20681 -13.81923 -13.54617 -13.43943 -12.99708 -12.83638 -12.75571 -12.71064 -12.63462 -12.48761 -12.24751 -12.03558 -11.79791 -11.79556 -11.40813 -11.28982 -11.22696 -10.41511 -10.03011 -9.72298 -9.55250 -8.78033 -8.38240 -6.51919 0.12406 0.64424 1.04612 1.27585 1.38932 1.52303 1.59356 2.18641 2.72360 3.13887 3.77334 3.87844 3.92106 4.04897 4.15334 4.20467 4.21928 4.31456 4.39751 4.50298 4.64768 4.67439 4.81856 4.84528 4.84572 4.96142 4.96341 5.06625 5.09142 5.11009 5.13217 5.22400 5.26293 5.31134 5.42864 5.46055 5.51197 5.54147 5.63473 5.82044 5.85927 6.04590 6.06892 6.21843 6.29256 6.62825 6.87125 8.09751 8.34755 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045436 B = 0.003148 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.102681 B = 8891.020260 C = 9316.046670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.151 4.151 8 C -0.009 4.009 9 C -0.265 4.265 10 C -0.042 4.042 11 C -0.287 4.287 12 C 0.217 3.783 13 C -0.450 4.450 14 H 0.096 0.904 15 C 0.019 3.981 16 N -0.746 5.746 17 Si 0.993 3.007 18 H -0.256 1.256 19 H -0.267 1.267 20 H -0.256 1.256 21 N -0.522 5.522 22 C 0.129 3.871 23 C -0.149 4.149 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.283 0.717 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 10.491 -12.167 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.193 4.193 5 C -0.100 4.100 6 C -0.123 4.123 7 C -0.169 4.169 8 C -0.010 4.010 9 C -0.270 4.270 10 C -0.065 4.065 11 C -0.309 4.309 12 C 0.094 3.906 13 C -0.480 4.480 14 H 0.114 0.886 15 C -0.204 4.204 16 N -0.367 5.367 17 Si 0.812 3.188 18 H -0.180 1.180 19 H -0.191 1.191 20 H -0.180 1.180 21 N -0.235 5.235 22 C -0.038 4.038 23 C -0.167 4.167 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.109 9.400 -12.032 15.812 hybrid contribution 0.504 0.128 0.743 0.907 sum -3.606 9.528 -11.289 15.206 Atomic orbital electron populations 1.21879 0.93326 1.02038 1.02088 1.19497 0.95950 0.95343 0.91778 1.21945 1.01134 0.94388 1.02431 1.21879 1.00789 1.00258 0.96404 1.20033 0.98974 0.93973 0.97054 1.20985 0.99863 0.94732 0.96763 1.21274 1.00036 1.00061 0.95548 1.18856 0.95591 0.93717 0.92790 1.19407 1.11436 0.96254 0.99893 1.21005 0.94111 0.98743 0.92631 1.21638 1.10608 0.96726 1.01947 1.19130 0.89144 0.89975 0.92352 1.20105 1.26456 0.96459 1.05006 0.88641 1.27150 0.93799 0.98698 1.00747 1.70210 1.22240 1.11842 1.32403 0.85108 0.79659 0.77053 0.77001 1.18032 1.19130 1.18044 1.68733 1.14560 1.36784 1.03388 1.23085 0.95105 0.91199 0.94415 1.21310 1.02330 0.93932 0.99098 1.21257 0.97720 1.00533 0.93493 0.93271 0.90859 0.92740 0.92438 0.91021 0.92419 0.92737 0.90856 0.93285 0.84891 0.86760 0.85260 0.86742 0.90636 0.84898 0.86109 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.28 71.98 0.60 -1.72 16 2 C -0.03 -0.48 0.85 -52.93 -0.05 -0.53 16 3 C -0.14 -2.25 7.13 71.98 0.51 -1.74 16 4 C -0.14 -2.32 8.29 71.98 0.60 -1.72 16 5 C -0.10 -2.59 4.77 -19.79 -0.09 -2.68 16 6 C -0.11 -3.01 8.69 22.23 0.19 -2.82 16 7 C -0.15 -5.29 9.44 22.53 0.21 -5.07 16 8 C -0.01 -0.34 5.88 -20.03 -0.12 -0.45 16 9 C -0.26 -12.19 5.92 -19.76 -0.12 -12.31 16 10 C -0.04 -1.89 9.46 22.40 0.21 -1.68 16 11 C -0.29 -14.29 9.76 22.55 0.22 -14.07 16 12 C 0.22 12.25 6.55 40.17 0.26 12.52 16 13 C -0.45 -24.36 9.12 23.40 0.21 -24.15 16 14 H 0.10 4.74 7.85 -2.91 -0.02 4.71 16 15 C 0.02 0.96 5.50 85.31 0.47 1.43 16 16 N -0.75 -40.30 11.44 21.85 0.25 -40.05 16 17 Si 0.99 37.37 29.56 68.60 2.03 39.40 16 18 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 19 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 N -0.52 -29.97 7.83 -188.22 -1.47 -31.44 16 22 C 0.13 6.52 10.60 85.24 0.90 7.43 16 23 C -0.15 -4.96 9.44 22.53 0.21 -4.74 16 24 C -0.11 -3.09 8.96 22.23 0.20 -2.89 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.05 0.95 7.38 -2.38 -0.02 0.93 16 28 H 0.06 0.93 7.52 -2.39 -0.02 0.91 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.93 7.50 -2.39 -0.02 0.91 16 31 H 0.05 0.95 7.38 -2.38 -0.02 0.93 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.13 3.15 7.08 -2.91 -0.02 3.13 16 35 H 0.11 3.98 6.22 -2.91 -0.02 3.97 16 36 H 0.13 4.90 6.30 -2.91 -0.02 4.88 16 37 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 38 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 39 H 0.13 6.15 6.21 -2.91 -0.02 6.13 16 40 H 0.12 3.78 6.25 -2.91 -0.02 3.76 16 41 H 0.14 3.13 5.87 -2.91 -0.02 3.11 16 Total: -1.00 -63.53 331.41 6.26 -57.27 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.03 Total: 30.03 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 4.43 Total: -55.21 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.22 Total: -71.49 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -63.53 6.26 -57.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117064190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.011 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds