Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46813 * 2 1 4 4 C 1.36939 * 120.00342 * 275.65749 * 3 2 1 5 5 H 1.08002 * 119.99664 * 34.01289 * 4 3 2 6 6 C 1.38812 * 120.00134 * 214.01172 * 4 3 2 7 7 N 1.31613 * 120.00132 * 22.90902 * 6 4 3 8 8 Si 1.86804 * 119.99960 * 202.90669 * 6 4 3 9 9 H 1.48494 * 109.47025 * 89.99898 * 8 6 4 10 10 H 1.48496 * 109.46935 * 210.00016 * 8 6 4 11 11 H 1.48497 * 109.47053 * 330.00058 * 8 6 4 12 12 C 1.46506 * 120.00049 * 95.66042 * 3 2 1 13 13 C 1.50700 * 109.46792 * 270.00068 * 12 3 2 14 14 C 1.38325 * 119.88094 * 89.99971 * 13 12 3 15 15 C 1.38020 * 120.12234 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.87501 * 0.02562 * 15 14 13 17 17 C 1.48391 * 120.11480 * 179.97438 * 16 15 14 18 18 C 1.39337 * 120.11883 * 180.02562 * 17 16 15 19 19 C 1.38020 * 119.87904 * 180.02562 * 18 17 16 20 20 C 1.38315 * 120.12017 * 359.97438 * 19 18 17 21 21 C 1.38325 * 120.24636 * 0.25709 * 20 19 18 22 22 C 1.38017 * 120.11658 * 359.49001 * 21 20 19 23 23 C 1.39334 * 119.76189 * 0.25010 * 16 15 14 24 24 C 1.38017 * 119.87589 * 359.49718 * 23 16 15 25 25 H 1.09001 * 109.47117 * 299.99453 * 1 2 3 26 26 H 1.08998 * 109.47264 * 59.99938 * 1 2 3 27 27 H 1.08997 * 109.46590 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47117 * 240.00547 * 2 1 3 29 29 H 1.08998 * 109.47264 * 120.00062 * 2 1 3 30 30 H 0.96996 * 120.00276 * 179.97438 * 7 6 4 31 31 H 1.08991 * 109.46939 * 149.99729 * 12 3 2 32 32 H 1.09005 * 109.46631 * 29.99692 * 12 3 2 33 33 H 1.08007 * 119.93396 * 359.97438 * 14 13 12 34 34 H 1.08000 * 120.05609 * 179.97438 * 15 14 13 35 35 H 1.08008 * 120.06177 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.93790 * 180.02562 * 19 18 17 37 37 H 1.08006 * 119.88161 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.94158 * 179.74422 * 21 20 19 39 39 H 1.08008 * 120.05997 * 180.23262 * 22 21 20 40 40 H 1.08002 * 120.05943 * 179.74616 * 23 16 15 41 41 H 1.08002 * 119.93941 * 180.25420 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1363 2.0658 -1.1801 5 1 1.4321 1.8890 -1.9797 6 6 3.1609 2.9870 -1.3487 7 7 4.2516 2.8994 -0.6172 8 14 2.9918 4.3510 -2.6138 9 1 2.3638 5.5383 -1.9806 10 1 4.3354 4.7174 -3.1292 11 1 2.1419 3.8815 -3.7373 12 6 2.3804 2.0302 1.2626 13 6 1.1715 2.7239 1.8356 14 6 0.3283 2.0421 2.6944 15 6 -0.7800 2.6727 3.2224 16 6 -1.0491 3.9985 2.8886 17 6 -2.2395 4.6815 3.4528 18 6 -2.5089 6.0071 3.1186 19 6 -3.6172 6.6377 3.6466 20 6 -4.4601 5.9561 4.5058 21 6 -4.1948 4.6415 4.8448 22 6 -3.0922 3.9996 4.3184 23 6 -0.1995 4.6787 2.0185 24 6 0.9088 4.0399 1.5004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.9677 3.5429 -0.7353 31 1 3.1678 2.7619 1.0822 32 1 2.7368 1.2793 1.9678 33 1 0.5376 1.0143 2.9521 34 1 -1.4379 2.1393 3.8925 35 1 -1.8512 6.5404 2.4481 36 1 -3.8272 7.6650 3.3879 37 1 -5.3260 6.4535 4.9171 38 1 -4.8540 4.1153 5.5193 39 1 -2.8881 2.9719 4.5808 40 1 -0.4058 5.7051 1.7532 41 1 1.5703 4.5675 0.8292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121000511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = 52.462429 kcal Electronic energy + Delta-G solvation = -21206.978238 eV Core-core repulsion = 18244.320801 eV Total energy + Delta-G solvation = -2962.657437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76553 -39.36806 -37.51526 -33.96196 -33.74390 -32.33410 -31.36084 -31.18213 -29.76380 -27.21810 -25.35550 -24.34269 -23.47609 -22.28127 -22.15514 -21.34706 -18.75379 -18.31986 -17.02599 -16.79358 -16.31233 -16.13710 -15.63664 -15.51314 -15.13020 -14.90720 -14.65862 -14.39461 -14.18072 -14.12697 -13.83547 -13.53877 -13.27987 -13.03836 -12.99903 -12.69410 -12.36459 -12.33186 -12.20729 -12.01418 -11.81588 -11.75012 -11.53169 -11.42136 -10.54808 -10.36678 -9.83372 -9.73878 -8.77049 -8.61403 -7.84263 -5.41712 -0.14843 0.52491 0.60676 1.08801 1.41678 1.45124 1.52188 2.48440 2.77310 3.17989 3.25833 3.73296 3.84494 3.86623 4.04881 4.17269 4.22771 4.29735 4.40814 4.43495 4.47587 4.59481 4.64507 4.74425 4.80989 4.85385 4.94476 4.99608 5.07379 5.13925 5.23050 5.27628 5.29002 5.42981 5.52113 5.57732 5.60047 5.63288 5.67363 5.75606 5.88237 6.01518 6.12132 6.21028 6.46369 7.14695 7.85504 8.36052 9.11412 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.004629 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.002196 B = 6047.465554 C = 6894.384899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.050 0.950 6 C -0.029 4.029 7 N -0.912 5.912 8 Si 0.943 3.057 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.273 1.273 12 C 0.172 3.828 13 C -0.080 4.080 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.073 4.073 17 C -0.053 4.053 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.253 0.747 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 3.078 11.708 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.311 5.311 4 C -0.388 4.388 5 H 0.067 0.933 6 C -0.226 4.226 7 N -0.557 5.557 8 Si 0.772 3.228 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.198 1.198 12 C 0.047 3.953 13 C -0.082 4.082 14 C -0.136 4.136 15 C -0.127 4.127 16 C -0.073 4.073 17 C -0.053 4.053 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.401 3.116 11.664 19.569 hybrid contribution 0.572 0.825 -1.132 1.513 sum -14.829 3.941 10.532 18.610 Atomic orbital electron populations 1.22213 0.97858 1.00693 1.00720 1.20985 0.93378 0.85357 0.99026 1.43950 1.75981 1.09408 1.01777 1.19143 1.06814 1.19138 0.93737 0.93257 1.25566 0.93960 1.02990 1.00123 1.70076 1.05175 1.36450 1.43956 0.85642 0.76761 0.80650 0.79783 1.21131 1.21747 1.19774 1.19957 0.93363 0.96420 0.85603 1.21075 0.98915 0.93812 0.94440 1.21054 0.94909 0.99901 0.97706 1.21364 0.97326 0.93865 1.00167 1.18853 0.95234 0.94461 0.98760 1.18943 0.94255 0.94253 0.97861 1.21449 0.98669 0.94296 1.00706 1.21378 0.94343 1.00931 0.97479 1.21565 1.00102 0.94967 0.97878 1.21432 0.97109 0.95391 0.99917 1.21474 0.95033 1.00695 0.97078 1.21274 0.94487 1.00123 0.97657 1.20921 0.97857 0.95456 0.99602 0.92998 0.95365 0.91422 0.94871 0.93032 0.93804 0.90647 0.94299 0.85268 0.83599 0.85970 0.83997 0.83431 0.83360 0.84641 0.85407 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 10.20 71.98 0.73 -4.89 16 2 C 0.14 5.75 6.44 86.38 0.56 6.31 16 3 N -0.59 -29.38 2.44 -706.32 -1.73 -31.10 16 4 C -0.26 -14.21 9.48 84.03 0.80 -13.42 16 5 H 0.05 2.78 7.93 -2.91 -0.02 2.75 16 6 C -0.03 -1.60 4.95 84.86 0.42 -1.18 16 7 N -0.91 -52.71 11.31 21.65 0.24 -52.46 16 8 Si 0.94 44.81 29.61 68.60 2.03 46.84 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.17 8.17 5.45 85.63 0.47 8.64 16 13 C -0.08 -3.32 5.45 -19.82 -0.11 -3.43 16 14 C -0.12 -4.04 7.85 22.24 0.17 -3.86 16 15 C -0.11 -3.32 9.43 22.48 0.21 -3.11 16 16 C -0.07 -2.32 5.88 -20.04 -0.12 -2.44 16 17 C -0.05 -1.44 5.88 -20.04 -0.12 -1.56 16 18 C -0.13 -3.30 9.43 22.48 0.21 -3.09 16 19 C -0.12 -2.42 10.03 22.24 0.22 -2.20 16 20 C -0.13 -2.17 10.04 22.31 0.22 -1.94 16 21 C -0.12 -2.15 10.03 22.24 0.22 -1.93 16 22 C -0.13 -2.78 9.43 22.48 0.21 -2.57 16 23 C -0.12 -4.19 9.43 22.48 0.21 -3.98 16 24 C -0.12 -5.03 9.68 22.24 0.22 -4.82 16 25 H 0.05 1.85 6.12 -2.39 -0.01 1.84 16 26 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 29 H 0.05 1.95 7.83 -2.39 -0.02 1.94 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.08 4.12 5.25 -2.39 -0.01 4.11 16 32 H 0.04 1.73 7.80 -2.38 -0.02 1.71 16 33 H 0.13 3.98 8.02 -2.91 -0.02 3.96 16 34 H 0.15 3.40 6.21 -2.91 -0.02 3.38 16 35 H 0.12 2.94 6.21 -2.91 -0.02 2.93 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.14 2.57 6.21 -2.91 -0.02 2.55 16 40 H 0.13 4.03 6.21 -2.91 -0.02 4.01 16 41 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -63.25 336.47 6.10 -57.14 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.01 Total: 19.05 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 4.54 Total: -39.47 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.48 Total: -83.57 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.25 6.10 -57.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121000511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.604 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds