Wall clock time and date at job start Tue Mar 31 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35957 * 116.99725 * 2 1 4 4 C 1.38656 * 120.06130 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96659 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.09669 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.93921 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47060 * 20.00024 * 7 6 5 9 9 C 1.52997 * 109.47212 * 259.99968 * 7 6 5 10 10 N 1.46896 * 109.47239 * 140.00177 * 7 6 5 11 11 C 1.46901 * 110.99913 * 205.00362 * 10 7 6 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 7 13 13 C 1.52991 * 109.47310 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47479 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99696 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00420 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99971 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00101 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46915 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46966 * 120.00075 * 18 16 14 21 21 H 1.48498 * 109.47110 * 240.00528 * 18 16 14 22 22 C 1.38255 * 120.12753 * 0.25057 * 6 5 4 23 23 C 1.38338 * 120.02729 * 359.49335 * 22 6 5 24 24 F 1.35097 * 120.05001 * 180.23277 * 23 22 6 25 25 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47351 * 299.99779 * 1 2 3 27 27 H 1.09003 * 109.47172 * 59.99871 * 1 2 3 28 28 H 1.07998 * 120.02361 * 0.04787 * 4 3 2 29 29 H 1.08001 * 119.94986 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 9 7 6 31 31 H 1.08998 * 109.47533 * 59.99628 * 9 7 6 32 32 H 1.08996 * 109.47853 * 179.97438 * 9 7 6 33 33 H 1.00896 * 111.00728 * 81.04506 * 10 7 6 34 34 H 1.09007 * 109.47248 * 299.99411 * 11 10 7 35 35 H 1.08990 * 109.47767 * 59.99672 * 11 10 7 36 36 H 1.09010 * 109.46876 * 299.99637 * 12 11 10 37 37 H 1.09000 * 109.47585 * 59.99024 * 12 11 10 38 38 H 1.08998 * 109.47265 * 299.99539 * 13 12 11 39 39 H 1.09000 * 109.47802 * 59.99535 * 13 12 11 40 40 H 0.96999 * 119.99973 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.99311 * 179.74317 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0000 6 6 3.3022 3.6778 -0.0016 7 6 3.9848 5.0213 -0.0028 8 1 3.2888 5.7827 0.3493 9 6 4.4375 5.3621 -1.4239 10 7 5.1535 4.9775 0.8861 11 6 5.4882 6.3192 1.3821 12 6 6.7079 6.2334 2.3018 13 6 7.0569 7.6307 2.8179 14 6 8.2579 7.5461 3.7242 15 1 8.7253 6.5910 3.9136 16 6 8.7600 8.6879 4.3117 17 7 8.1912 9.8509 4.0807 18 14 10.2483 8.5829 5.4358 19 1 10.6982 7.1709 5.5306 20 1 11.3462 9.4157 4.8824 21 1 9.8838 9.0786 6.7873 22 6 4.0578 2.5200 -0.0079 23 6 3.4333 1.2857 -0.0020 24 9 4.1713 0.1541 -0.0034 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2136 2.3201 0.0017 29 1 1.3340 4.5115 0.0008 30 1 5.1335 4.6007 -1.7760 31 1 3.5704 5.3946 -2.0836 32 1 4.9309 6.3340 -1.4250 33 1 5.9444 4.5555 0.4231 34 1 5.7145 6.9722 0.5392 35 1 4.6417 6.7229 1.9374 36 1 6.4821 5.5802 3.1448 37 1 7.5543 5.8297 1.7462 38 1 7.2829 8.2835 1.9747 39 1 6.2106 8.0348 3.3734 40 1 8.5442 10.6542 4.4944 41 1 5.1362 2.5792 -0.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121550113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:13 Heat of formation + Delta-G solvation = -75.203670 kcal Electronic energy + Delta-G solvation = -21109.219096 eV Core-core repulsion = 17710.256416 eV Total energy + Delta-G solvation = -3398.962680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.83740 -40.30074 -38.51947 -36.41346 -33.90458 -32.12175 -30.91230 -30.04972 -28.84433 -27.48900 -25.93030 -23.60560 -23.08986 -22.15937 -20.81597 -20.04581 -18.53306 -17.05999 -16.96231 -16.34744 -16.25646 -15.38834 -15.19548 -14.99599 -14.90990 -14.57863 -14.39820 -14.23185 -13.70695 -13.19429 -12.99256 -12.71307 -12.48826 -12.31715 -12.17483 -11.95479 -11.59763 -11.44679 -11.30217 -11.13954 -11.05619 -10.85263 -10.57349 -10.44980 -9.69610 -9.33915 -9.07513 -9.02391 -8.33861 -8.32722 -8.15626 -5.98349 -4.00121 0.98322 1.07531 2.88303 3.32619 3.37375 3.40019 3.44848 4.06707 4.27031 4.47997 4.49591 4.58564 4.75478 4.79898 4.92502 5.05251 5.09343 5.14351 5.21846 5.37697 5.39043 5.50418 5.62925 5.76392 5.82302 5.85610 5.89537 5.96819 6.07176 6.32075 6.35949 6.46107 6.72807 6.77899 7.04055 7.14723 7.31266 7.57605 7.70367 7.84903 8.02313 8.45789 9.07380 9.63960 11.13156 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028754 B = 0.002678 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.530036 B =10452.234156 C =10837.702598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.085 3.915 4 C -0.181 4.181 5 C -0.087 4.087 6 C -0.067 4.067 7 C 0.122 3.878 8 H 0.089 0.911 9 C -0.178 4.178 10 N -0.684 5.684 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.094 4.094 23 C 0.069 3.931 24 F -0.135 7.135 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.339 0.661 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -15.550 -12.482 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.039 3.961 4 C -0.200 4.200 5 C -0.106 4.106 6 C -0.069 4.069 7 C 0.012 3.988 8 H 0.107 0.893 9 C -0.237 4.237 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.113 4.113 23 C 0.049 3.951 24 F -0.113 7.113 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.141 -15.766 -11.872 26.140 hybrid contribution 1.044 0.405 -0.116 1.126 sum -16.097 -15.360 -11.987 25.273 Atomic orbital electron populations 1.23087 0.78134 1.04102 1.01449 1.86127 1.21555 1.25998 1.88965 1.18979 0.90818 0.85533 1.00735 1.21049 1.00050 0.91412 1.07479 1.20865 0.93864 0.97256 0.98566 1.19631 0.92895 0.94694 0.99633 1.20421 0.93828 0.92964 0.91578 0.89281 1.22500 1.01921 1.02182 0.97131 1.60670 1.07611 1.23204 1.39963 1.22165 0.99678 0.87366 0.97622 1.21626 0.94150 1.01118 0.97647 1.19065 0.96436 0.90227 0.95849 1.21301 1.13088 0.93504 1.27671 0.92619 1.25032 0.97232 0.95504 0.96813 1.69974 1.40965 0.98293 1.44426 0.86544 0.82833 0.78108 0.80580 1.19713 1.21070 1.21020 1.20805 1.01259 0.89404 0.99819 1.16978 0.85873 0.83028 1.09243 1.91492 1.76446 1.49060 1.94322 0.88109 0.92439 0.92554 0.84672 0.85117 0.92252 0.92049 0.91799 0.84317 0.95518 0.91395 0.92522 0.93643 0.96814 0.96592 0.93115 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.46 10.36 -19.61 -0.20 -3.66 16 3 C 0.09 0.99 6.69 -39.18 -0.26 0.72 16 4 C -0.18 -1.70 9.04 -39.45 -0.36 -2.06 16 5 C -0.09 -0.84 9.66 -39.59 -0.38 -1.22 16 6 C -0.07 -0.75 4.96 -104.61 -0.52 -1.27 16 7 C 0.12 1.39 2.79 -68.87 -0.19 1.20 16 8 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 9 C -0.18 -1.78 9.14 37.16 0.34 -1.44 16 10 N -0.68 -9.46 5.71 -107.95 -0.62 -10.08 16 11 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 12 C -0.11 -2.20 5.41 -26.73 -0.14 -2.35 16 13 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 C -0.09 -1.12 9.29 -39.54 -0.37 -1.49 16 23 C 0.07 0.88 7.31 -39.30 -0.29 0.59 16 24 F -0.13 -1.89 17.11 2.25 0.04 -1.86 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 28 H 0.14 0.90 6.30 -52.49 -0.33 0.56 16 29 H 0.13 0.98 8.03 -52.49 -0.42 0.56 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 33 H 0.34 4.39 7.82 -39.29 -0.31 4.08 16 34 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 35 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 36 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 1.60 7.25 -52.49 -0.38 1.22 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -31.96 344.81 -7.94 -39.90 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.32 Total: -1.58 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -1.75 Total: -18.38 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.12 Total: -36.49 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.66 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.96 -7.94 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121550113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.301 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds