Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35957 * 116.99725 * 2 1 4 4 C 1.38656 * 120.06130 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96659 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.09669 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.93921 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47060 * 20.00024 * 7 6 5 9 9 C 1.52997 * 109.47212 * 259.99968 * 7 6 5 10 10 N 1.46896 * 109.47239 * 140.00177 * 7 6 5 11 11 C 1.46901 * 110.99913 * 205.00362 * 10 7 6 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 7 13 13 C 1.52991 * 109.47310 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47479 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99696 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00420 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99971 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00101 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46915 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46966 * 120.00075 * 18 16 14 21 21 H 1.48498 * 109.47110 * 240.00528 * 18 16 14 22 22 C 1.38255 * 120.12753 * 0.25057 * 6 5 4 23 23 C 1.38338 * 120.02729 * 359.49335 * 22 6 5 24 24 F 1.35097 * 120.05001 * 180.23277 * 23 22 6 25 25 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47351 * 299.99779 * 1 2 3 27 27 H 1.09003 * 109.47172 * 59.99871 * 1 2 3 28 28 H 1.07998 * 120.02361 * 0.04787 * 4 3 2 29 29 H 1.08001 * 119.94986 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 9 7 6 31 31 H 1.08998 * 109.47533 * 59.99628 * 9 7 6 32 32 H 1.08996 * 109.47853 * 179.97438 * 9 7 6 33 33 H 1.00896 * 111.00728 * 81.04506 * 10 7 6 34 34 H 1.09007 * 109.47248 * 299.99411 * 11 10 7 35 35 H 1.08990 * 109.47767 * 59.99672 * 11 10 7 36 36 H 1.09010 * 109.46876 * 299.99637 * 12 11 10 37 37 H 1.09000 * 109.47585 * 59.99024 * 12 11 10 38 38 H 1.08998 * 109.47265 * 299.99539 * 13 12 11 39 39 H 1.09000 * 109.47802 * 59.99535 * 13 12 11 40 40 H 0.96999 * 119.99973 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.99311 * 179.74317 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0000 6 6 3.3022 3.6778 -0.0016 7 6 3.9848 5.0213 -0.0028 8 1 3.2888 5.7827 0.3493 9 6 4.4375 5.3621 -1.4239 10 7 5.1535 4.9775 0.8861 11 6 5.4882 6.3192 1.3821 12 6 6.7079 6.2334 2.3018 13 6 7.0569 7.6307 2.8179 14 6 8.2579 7.5461 3.7242 15 1 8.7253 6.5910 3.9136 16 6 8.7600 8.6879 4.3117 17 7 8.1912 9.8509 4.0807 18 14 10.2483 8.5829 5.4358 19 1 10.6982 7.1709 5.5306 20 1 11.3462 9.4157 4.8824 21 1 9.8838 9.0786 6.7873 22 6 4.0578 2.5200 -0.0079 23 6 3.4333 1.2857 -0.0020 24 9 4.1713 0.1541 -0.0034 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2136 2.3201 0.0017 29 1 1.3340 4.5115 0.0008 30 1 5.1335 4.6007 -1.7760 31 1 3.5704 5.3946 -2.0836 32 1 4.9309 6.3340 -1.4250 33 1 5.9444 4.5555 0.4231 34 1 5.7145 6.9722 0.5392 35 1 4.6417 6.7229 1.9374 36 1 6.4821 5.5802 3.1448 37 1 7.5543 5.8297 1.7462 38 1 7.2829 8.2835 1.9747 39 1 6.2106 8.0348 3.3734 40 1 8.5442 10.6542 4.4944 41 1 5.1362 2.5792 -0.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121550113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = -94.548772 kcal Electronic energy + Delta-G solvation = -21110.057963 eV Core-core repulsion = 17710.256416 eV Total energy + Delta-G solvation = -3399.801546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.81544 -41.08053 -39.38002 -37.52612 -35.68918 -33.82322 -31.72069 -31.36709 -29.78619 -28.10046 -27.67095 -24.80502 -24.09749 -23.43521 -22.03138 -21.43981 -19.30025 -18.51419 -17.86327 -17.82050 -17.13064 -16.57927 -16.53121 -16.03798 -16.00729 -15.71339 -15.58473 -15.08106 -14.81714 -14.46604 -14.18041 -13.81907 -13.64179 -13.59468 -13.21293 -13.05481 -12.95807 -12.68202 -12.53567 -12.45859 -12.22859 -12.07623 -11.93944 -11.85082 -11.51757 -11.34876 -11.05797 -10.54904 -9.89151 -9.36706 -9.07111 -8.19820 -6.30211 0.15961 0.25472 1.40022 1.40381 1.53894 2.22755 2.41268 2.55053 3.13372 3.22944 3.25570 3.71229 3.79529 4.02654 4.21454 4.25287 4.31594 4.38025 4.40334 4.42305 4.47441 4.60509 4.68136 4.73840 4.79246 4.82821 4.98437 5.01096 5.11142 5.14413 5.18791 5.25378 5.27427 5.51713 5.56348 5.67983 5.77893 5.87876 6.11321 6.29087 6.32209 6.48204 6.87039 7.38913 8.92188 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028754 B = 0.002678 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.530036 B =10452.234156 C =10837.702598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.079 3.921 4 C -0.174 4.174 5 C -0.081 4.081 6 C -0.077 4.077 7 C 0.125 3.875 8 H 0.094 0.906 9 C -0.173 4.173 10 N -0.688 5.688 11 C 0.075 3.925 12 C -0.094 4.094 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.057 0.943 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.278 1.278 22 C -0.100 4.100 23 C 0.035 3.965 24 F -0.151 7.151 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.049 0.951 38 H -0.007 1.007 39 H -0.008 1.008 40 H 0.264 0.736 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -15.970 -12.721 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.193 4.193 5 C -0.099 4.099 6 C -0.078 4.078 7 C 0.016 3.984 8 H 0.112 0.888 9 C -0.232 4.232 10 N -0.319 5.319 11 C -0.054 4.054 12 C -0.132 4.132 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.075 0.925 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.120 4.120 23 C 0.016 3.984 24 F -0.130 7.130 25 H 0.135 0.865 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.185 0.815 29 H 0.176 0.824 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.283 -16.205 -12.124 27.273 hybrid contribution 1.295 0.507 -0.063 1.392 sum -16.988 -15.698 -12.187 26.145 Atomic orbital electron populations 1.23425 0.75725 1.05805 1.02774 1.86101 1.24133 1.26094 1.88862 1.19177 0.90562 0.86566 1.00377 1.21381 1.01499 0.90376 1.06003 1.21206 0.93363 0.98479 0.96852 1.19655 0.93693 0.93955 1.00526 1.20447 0.92760 0.93412 0.91813 0.88775 1.22439 1.02572 1.01700 0.96489 1.60569 1.08676 1.21263 1.41414 1.21833 0.97595 0.89018 0.96911 1.21380 0.96196 0.97446 0.98156 1.18967 0.94863 0.92847 0.94541 1.21736 1.14110 0.93757 1.28381 0.92478 1.25970 1.00443 0.95075 0.98406 1.70093 1.42633 0.99084 1.45531 0.85416 0.78844 0.78535 0.78361 1.18792 1.20262 1.20319 1.20837 1.01348 0.89601 1.00168 1.17315 0.86823 0.82867 1.11423 1.91437 1.76953 1.49877 1.94692 0.86451 0.91271 0.90910 0.81539 0.82437 0.92142 0.90381 0.92519 0.83771 0.95224 0.91739 0.93247 0.93251 0.98877 0.98947 0.92771 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.11 10.36 -93.07 -0.96 -8.07 16 3 C 0.08 1.75 6.69 22.53 0.15 1.90 16 4 C -0.17 -2.80 9.04 22.36 0.20 -2.60 16 5 C -0.08 -1.33 9.66 22.26 0.22 -1.12 16 6 C -0.08 -1.60 4.96 -19.86 -0.10 -1.70 16 7 C 0.13 2.64 2.79 44.17 0.12 2.76 16 8 H 0.09 1.91 7.66 -2.39 -0.02 1.89 16 9 C -0.17 -3.15 9.14 71.98 0.66 -2.49 16 10 N -0.69 -18.43 5.71 -495.46 -2.83 -21.26 16 11 C 0.08 2.46 5.48 86.30 0.47 2.94 16 12 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 13 C 0.03 1.35 4.97 29.84 0.15 1.50 16 14 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 19 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 C -0.10 -2.37 9.29 22.30 0.21 -2.16 16 23 C 0.04 0.91 7.31 22.45 0.16 1.08 16 24 F -0.15 -4.41 17.11 44.97 0.77 -3.64 16 25 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.53 7.66 -2.39 -0.02 0.52 16 27 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 28 H 0.17 1.54 6.30 -2.91 -0.02 1.53 16 29 H 0.16 1.74 8.03 -2.91 -0.02 1.71 16 30 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 33 H 0.34 8.66 7.82 -89.70 -0.70 7.96 16 34 H 0.03 0.95 7.44 -2.38 -0.02 0.93 16 35 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 36 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.14 3.20 7.25 -2.91 -0.02 3.17 16 Total: -1.00 -69.58 344.81 3.82 -65.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.32 Total: 10.26 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.22 Total: -33.08 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.54 Total: -78.11 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.96 Total: -8.07 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.58 3.82 -65.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121550113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds