Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35959 * 116.99964 * 2 1 4 4 C 1.38662 * 120.06009 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.96928 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.09321 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.93299 * 180.27501 * 6 5 4 8 8 H 1.08995 * 109.46630 * 159.72867 * 7 6 5 9 9 C 1.52999 * 109.47137 * 279.72395 * 7 6 5 10 10 N 1.46898 * 109.47061 * 39.72380 * 7 6 5 11 11 C 1.46907 * 110.99618 * 155.00137 * 10 7 6 12 12 C 1.52995 * 109.46725 * 180.02562 * 11 10 7 13 13 C 1.53008 * 109.46886 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47084 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00251 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99976 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00224 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47476 * 119.99876 * 18 16 14 21 21 H 1.48503 * 109.47340 * 240.00095 * 18 16 14 22 22 C 1.38255 * 120.12550 * 359.97438 * 6 5 4 23 23 C 1.38328 * 120.03279 * 359.97438 * 22 6 5 24 24 F 1.35095 * 120.05101 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47390 * 299.99549 * 1 2 3 27 27 H 1.09000 * 109.47117 * 60.00143 * 1 2 3 28 28 H 1.08003 * 120.01439 * 0.04141 * 4 3 2 29 29 H 1.07996 * 119.95168 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47131 * 59.99764 * 9 7 6 31 31 H 1.08993 * 109.47190 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.47102 * 300.00626 * 9 7 6 33 33 H 1.00895 * 111.00174 * 278.95071 * 10 7 6 34 34 H 1.09005 * 109.46940 * 299.99470 * 11 10 7 35 35 H 1.08993 * 109.47516 * 59.99640 * 11 10 7 36 36 H 1.09000 * 109.47275 * 299.99517 * 12 11 10 37 37 H 1.09001 * 109.47739 * 59.99787 * 12 11 10 38 38 H 1.08993 * 109.47462 * 299.99880 * 13 12 11 39 39 H 1.09003 * 109.46806 * 60.00178 * 13 12 11 40 40 H 0.96998 * 120.00097 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.98146 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 0.0000 6 6 3.3022 3.6778 0.0005 7 6 3.9848 5.0214 0.0074 8 1 5.0087 4.9068 0.3630 9 6 3.9987 5.5936 -1.4115 10 7 3.2567 5.9359 0.8970 11 6 4.1410 6.9954 1.4006 12 6 3.3490 7.9254 2.3219 13 6 4.2701 9.0286 2.8469 14 6 3.4899 9.9451 3.7539 15 1 2.4421 9.7591 3.9378 16 6 4.1139 11.0210 4.3489 17 7 5.3898 11.2478 4.1245 18 14 3.1471 12.1566 5.4736 19 1 1.7406 11.6876 5.5603 20 1 3.7564 12.1484 6.8278 21 1 3.1752 13.5369 4.9265 22 6 4.0578 2.5200 0.0011 23 6 3.4333 1.2857 0.0016 24 9 4.1713 0.1541 0.0016 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2136 2.3200 -0.0003 29 1 1.3340 4.5115 0.0000 30 1 2.9748 5.7080 -1.7672 31 1 4.4928 6.5651 -1.4066 32 1 4.5389 4.9149 -2.0717 33 1 2.4514 6.3276 0.4324 34 1 4.9641 6.5476 1.9576 35 1 4.5383 7.5665 0.5616 36 1 2.5257 8.3733 1.7654 37 1 2.9521 7.3541 3.1610 38 1 5.0932 8.5805 3.4035 39 1 4.6673 9.6001 2.0080 40 1 5.8288 12.0046 4.5434 41 1 5.1362 2.5792 0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121550243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = -75.404230 kcal Electronic energy + Delta-G solvation = -21075.393688 eV Core-core repulsion = 17676.422312 eV Total energy + Delta-G solvation = -3398.971377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.88170 -40.29882 -38.51448 -36.41415 -33.91059 -32.13709 -30.94808 -30.06403 -28.81167 -27.45338 -25.91247 -23.67453 -23.07914 -22.20210 -20.78607 -20.05839 -18.53283 -17.15984 -16.77971 -16.35421 -16.31486 -15.46236 -15.22496 -15.00902 -14.79687 -14.69486 -14.44942 -14.28143 -13.56795 -13.21824 -12.99984 -12.75399 -12.46183 -12.28538 -12.19158 -11.96983 -11.58034 -11.51724 -11.31206 -11.16593 -10.97562 -10.86502 -10.58798 -10.46539 -9.71155 -9.35072 -9.09687 -9.04504 -8.34471 -8.31051 -8.17724 -5.99367 -4.01348 0.97976 1.07707 2.88476 3.31451 3.37858 3.38943 3.43254 3.99909 4.28632 4.47042 4.51559 4.66353 4.75758 4.82264 4.98152 5.01518 5.10280 5.14499 5.20103 5.33460 5.36624 5.48157 5.62429 5.72475 5.83360 5.86838 5.93206 5.97485 6.11801 6.30897 6.34153 6.45270 6.71250 6.76411 7.04152 7.13190 7.29620 7.56547 7.69174 7.83830 8.01210 8.44392 9.06176 9.62751 11.12138 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027880 B = 0.002649 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.073334 B =10565.832916 C =10988.731209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.086 3.914 4 C -0.181 4.181 5 C -0.066 4.066 6 C -0.068 4.068 7 C 0.122 3.878 8 H 0.088 0.912 9 C -0.178 4.178 10 N -0.683 5.683 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.113 4.113 23 C 0.067 3.933 24 F -0.136 7.136 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -20.156 -12.568 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.040 3.960 4 C -0.200 4.200 5 C -0.085 4.085 6 C -0.069 4.069 7 C 0.012 3.988 8 H 0.106 0.894 9 C -0.237 4.237 10 N -0.313 5.313 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.132 4.132 23 C 0.048 3.952 24 F -0.114 7.114 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.336 -20.663 -11.956 24.975 hybrid contribution -0.460 1.174 -0.112 1.266 sum -7.796 -19.489 -12.068 24.212 Atomic orbital electron populations 1.23095 0.78046 1.04100 1.01559 1.86115 1.21631 1.26000 1.88958 1.18980 0.90789 0.85565 1.00644 1.21132 1.00185 0.91471 1.07208 1.20810 0.94069 0.97083 0.96532 1.19616 0.93457 0.94148 0.99685 1.20407 0.97479 0.89338 0.91610 0.89370 1.22492 1.02424 1.01617 0.97138 1.60663 1.10115 1.20932 1.39608 1.22172 0.95785 0.91341 0.97593 1.21620 0.98701 0.96564 0.97587 1.19070 0.94564 0.92141 0.95828 1.21293 0.96384 1.10345 1.27589 0.92634 1.25034 0.94913 0.97810 0.96822 1.69976 1.09843 1.29501 1.44295 0.86545 0.80256 0.80655 0.80603 1.19726 1.21013 1.21069 1.20852 1.00948 0.89703 1.01726 1.16878 0.85891 0.82851 1.09620 1.91484 1.76459 1.49101 1.94395 0.88112 0.92350 0.92512 0.84629 0.84932 0.92268 0.91807 0.92031 0.84389 0.91373 0.95492 0.93675 0.92546 0.96568 0.96813 0.93095 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.46 10.36 -19.61 -0.20 -3.67 16 3 C 0.09 1.00 6.69 -39.18 -0.26 0.73 16 4 C -0.18 -1.79 9.04 -39.44 -0.36 -2.14 16 5 C -0.07 -0.69 9.31 -39.59 -0.37 -1.06 16 6 C -0.07 -0.76 4.96 -104.60 -0.52 -1.28 16 7 C 0.12 1.39 2.79 -68.86 -0.19 1.19 16 8 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 9 C -0.18 -1.75 9.14 37.16 0.34 -1.41 16 10 N -0.68 -9.18 5.70 -107.95 -0.61 -9.79 16 11 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 12 C -0.11 -2.16 5.41 -26.73 -0.14 -2.30 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.11 -1.27 9.64 -39.54 -0.38 -1.65 16 23 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 24 F -0.14 -1.82 17.11 2.25 0.04 -1.78 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 28 H 0.14 0.99 6.30 -52.48 -0.33 0.66 16 29 H 0.13 1.22 7.23 -52.49 -0.38 0.84 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.34 4.14 7.81 -39.29 -0.31 3.84 16 34 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 35 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 1.34 8.04 -52.49 -0.42 0.92 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -31.68 344.79 -7.94 -39.62 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.32 Total: -1.59 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.75 Total: -18.37 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.12 Total: -36.11 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.67 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.68 -7.94 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121550243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds