Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46897 * 2 1 4 4 C 1.53000 * 109.47364 * 120.00357 * 2 1 3 5 5 C 1.52997 * 109.47420 * 174.99860 * 4 2 1 6 6 N 1.46891 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00096 * 66.04615 * 6 5 4 8 8 C 1.50691 * 109.47552 * 199.30091 * 7 6 5 9 9 H 1.07999 * 119.99849 * 355.06639 * 8 7 6 10 10 C 1.37877 * 120.00195 * 175.07114 * 8 7 6 11 11 N 1.31514 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46787 * 59.99965 * 12 10 8 14 14 H 1.48499 * 109.47399 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47295 * 299.99972 * 12 10 8 16 16 C 1.46903 * 111.00066 * 190.00040 * 6 5 4 17 17 C 1.52994 * 109.47203 * 75.77099 * 16 6 5 18 18 C 1.50700 * 109.47294 * 174.86407 * 17 16 6 19 19 C 1.33391 * 125.20208 * 89.99749 * 18 17 16 20 20 C 1.38424 * 114.91866 * 179.97438 * 19 18 17 21 21 C 1.33386 * 114.92268 * 0.02562 * 20 19 18 22 22 S 1.75881 * 125.20453 * 269.69340 * 18 17 16 23 23 H 1.09000 * 109.46920 * 299.99708 * 1 2 3 24 24 H 1.08998 * 109.47270 * 59.99198 * 1 2 3 25 25 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46920 * 240.00292 * 2 1 3 27 27 H 1.09000 * 109.47097 * 60.00401 * 3 2 1 28 28 H 1.09008 * 109.46723 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47383 * 300.00160 * 3 2 1 30 30 H 1.08997 * 109.46848 * 54.99328 * 4 2 1 31 31 H 1.09003 * 109.46671 * 295.00158 * 4 2 1 32 32 H 1.09005 * 109.46819 * 59.99529 * 5 4 2 33 33 H 1.09000 * 109.46941 * 300.00602 * 5 4 2 34 34 H 1.08999 * 109.47066 * 319.30491 * 7 6 5 35 35 H 1.09008 * 109.46576 * 79.29793 * 7 6 5 36 36 H 0.96996 * 120.00473 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.46801 * 315.77002 * 16 6 5 38 38 H 1.09004 * 109.47128 * 195.76962 * 16 6 5 39 39 H 1.09002 * 109.46866 * 54.86493 * 17 16 6 40 40 H 1.09004 * 109.47186 * 294.86460 * 17 16 6 41 41 H 1.07997 * 122.53572 * 359.96199 * 19 18 17 42 42 H 1.08001 * 122.53401 * 180.02562 * 20 19 18 43 43 H 1.08002 * 125.20173 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0546 -1.5231 2.3875 7 6 3.6041 -2.9212 2.4096 8 6 3.6993 -3.4576 3.8146 9 1 4.1326 -2.8509 4.5960 10 6 3.2334 -4.7229 4.1025 11 7 2.7054 -5.4616 3.1511 12 14 3.3521 -5.3881 5.8441 13 1 2.5885 -4.5067 6.7636 14 1 2.7853 -6.7599 5.8897 15 1 4.7761 -5.4261 6.2635 16 6 5.5181 -1.4400 2.4826 17 6 5.9204 -0.0383 2.9455 18 6 7.4106 0.0101 3.1644 19 6 8.3137 0.3364 2.2385 20 6 9.6281 0.3123 2.6718 21 6 9.7926 -0.0341 3.9493 22 16 8.2246 -0.3478 4.6819 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9995 0.1675 1.1419 33 1 3.8532 -1.3939 0.3001 34 1 2.5700 -2.9751 2.0693 35 1 4.2352 -3.5166 1.7497 36 1 2.3773 -6.3516 3.3537 37 1 5.9577 -1.6401 1.5054 38 1 5.8780 -2.1770 3.2007 39 1 5.4082 0.1971 3.8784 40 1 5.6412 0.6899 2.1839 41 1 8.0399 0.5993 1.2274 42 1 10.4576 0.5556 2.0244 43 1 10.7428 -0.1059 4.4576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123502871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = 9.925089 kcal Electronic energy + Delta-G solvation = -19845.408140 eV Core-core repulsion = 17016.350097 eV Total energy + Delta-G solvation = -2829.058043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.11168 -37.36077 -35.48336 -32.83841 -31.92341 -28.88860 -27.81191 -26.96612 -25.90371 -23.68346 -22.81793 -21.87366 -19.87526 -19.46143 -19.03735 -16.93895 -16.37901 -15.45248 -15.05274 -14.74408 -14.48727 -14.21710 -13.74371 -13.47245 -13.36090 -12.75459 -12.63917 -12.45917 -12.34651 -12.08244 -11.98477 -11.80489 -11.50094 -11.40487 -11.04881 -11.00809 -10.74344 -10.62604 -10.60964 -10.39839 -10.32519 -10.06589 -10.03941 -9.52045 -9.19199 -8.47498 -8.35259 -8.31620 -7.23341 -5.98695 -3.99297 1.15944 1.80588 2.19021 2.87575 3.36125 3.39778 3.43128 4.44940 4.73357 5.08311 5.14298 5.17786 5.20775 5.33485 5.38904 5.50513 5.65431 5.67660 5.74618 5.77436 5.80777 5.94019 5.96180 6.02325 6.07290 6.11909 6.17565 6.23180 6.35749 6.36147 6.42406 6.46162 6.50344 6.67754 6.71733 6.78319 6.88868 7.28822 7.38565 7.85863 8.16287 8.24246 8.58804 9.07795 9.64388 11.11858 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.006273 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.912704 B = 4462.600611 C = 7273.901407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.056 3.944 6 N -0.536 5.536 7 C 0.190 3.810 8 C -0.503 4.503 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.071 3.929 17 C -0.047 4.047 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.231 4.231 22 S 0.103 5.897 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.040 0.960 35 H -0.014 1.014 36 H 0.261 0.739 37 H 0.022 0.978 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 13.228 -3.816 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.261 5.261 7 C 0.066 3.934 8 C -0.541 4.541 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.059 4.059 17 C -0.087 4.087 18 C -0.268 4.268 19 C -0.186 4.186 20 C -0.162 4.162 21 C -0.366 4.366 22 S 0.367 5.633 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.004 0.996 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.016 12.840 -1.984 14.318 hybrid contribution 0.978 -0.537 -1.231 1.661 sum 6.994 12.303 -3.214 14.513 Atomic orbital electron populations 1.21815 0.95594 1.01744 1.01080 1.21113 0.95445 0.96061 0.98970 1.21874 1.01042 0.96284 1.01060 1.21657 0.95281 1.01187 0.96698 1.22104 0.95456 0.97836 0.91810 1.62095 1.08408 1.19144 1.36408 1.19802 0.95872 0.80820 0.96956 1.21125 1.39257 0.99122 0.94630 0.92062 1.24965 0.95480 0.96941 0.97168 1.69940 1.41301 1.10459 1.32296 0.86616 0.78378 0.77851 0.84920 1.20184 1.21413 1.20263 1.21936 0.89388 0.95070 0.99474 1.20248 0.86601 0.99086 1.02761 1.24684 1.00345 1.05652 0.96131 1.20082 0.92052 1.05872 1.00570 1.20105 0.97372 1.03229 0.95523 1.25566 1.01211 1.10662 0.99186 1.84481 0.97647 1.67900 1.13287 0.92799 0.93349 0.92623 0.91764 0.92786 0.92654 0.93496 0.91057 0.91504 0.92197 0.96366 0.94249 0.99592 0.92953 0.96000 0.89909 0.89945 0.90767 0.84675 0.84829 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.10 -1.30 2.92 -90.62 -0.26 -1.57 16 3 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 4 C -0.11 -1.86 4.65 -26.73 -0.12 -1.98 16 5 C 0.06 0.99 4.54 -3.83 -0.02 0.98 16 6 N -0.54 -11.29 4.36 -236.08 -1.03 -12.31 16 7 C 0.19 4.90 4.59 -4.98 -0.02 4.88 16 8 C -0.50 -14.08 8.51 -34.44 -0.29 -14.37 16 9 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 12 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 C 0.07 1.35 4.79 -3.83 -0.02 1.33 16 17 C -0.05 -0.74 5.74 -27.89 -0.16 -0.90 16 18 C -0.15 -2.21 5.76 -36.00 -0.21 -2.41 16 19 C -0.16 -2.07 10.05 -41.21 -0.41 -2.48 16 20 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 21 C -0.23 -2.77 11.23 29.04 0.33 -2.45 16 22 S 0.10 1.45 23.33 -107.50 -2.51 -1.06 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 6.56 -51.92 -0.34 0.30 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.39 6.25 -51.93 -0.32 1.06 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.93 5.14 -51.93 -0.27 0.66 16 33 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.04 1.07 5.88 -51.93 -0.31 0.77 16 35 H -0.01 -0.38 8.01 -51.92 -0.42 -0.80 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 38 H 0.08 1.79 7.23 -51.93 -0.38 1.41 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.05 6.96 -51.93 -0.36 0.69 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -29.29 355.91 -10.92 -40.20 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.42 Total: -0.66 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.04 Total: -22.32 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.29 Total: -38.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.51 Total: -1.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.29 -10.92 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123502871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.128 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds