Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46897 * 2 1 4 4 C 1.53000 * 109.47364 * 120.00357 * 2 1 3 5 5 C 1.52997 * 109.47420 * 174.99860 * 4 2 1 6 6 N 1.46891 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00096 * 66.04615 * 6 5 4 8 8 C 1.50691 * 109.47552 * 199.30091 * 7 6 5 9 9 H 1.07999 * 119.99849 * 355.06639 * 8 7 6 10 10 C 1.37877 * 120.00195 * 175.07114 * 8 7 6 11 11 N 1.31514 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46787 * 59.99965 * 12 10 8 14 14 H 1.48499 * 109.47399 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47295 * 299.99972 * 12 10 8 16 16 C 1.46903 * 111.00066 * 190.00040 * 6 5 4 17 17 C 1.52994 * 109.47203 * 75.77099 * 16 6 5 18 18 C 1.50700 * 109.47294 * 174.86407 * 17 16 6 19 19 C 1.33391 * 125.20208 * 89.99749 * 18 17 16 20 20 C 1.38424 * 114.91866 * 179.97438 * 19 18 17 21 21 C 1.33386 * 114.92268 * 0.02562 * 20 19 18 22 22 S 1.75881 * 125.20453 * 269.69340 * 18 17 16 23 23 H 1.09000 * 109.46920 * 299.99708 * 1 2 3 24 24 H 1.08998 * 109.47270 * 59.99198 * 1 2 3 25 25 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46920 * 240.00292 * 2 1 3 27 27 H 1.09000 * 109.47097 * 60.00401 * 3 2 1 28 28 H 1.09008 * 109.46723 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47383 * 300.00160 * 3 2 1 30 30 H 1.08997 * 109.46848 * 54.99328 * 4 2 1 31 31 H 1.09003 * 109.46671 * 295.00158 * 4 2 1 32 32 H 1.09005 * 109.46819 * 59.99529 * 5 4 2 33 33 H 1.09000 * 109.46941 * 300.00602 * 5 4 2 34 34 H 1.08999 * 109.47066 * 319.30491 * 7 6 5 35 35 H 1.09008 * 109.46576 * 79.29793 * 7 6 5 36 36 H 0.96996 * 120.00473 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.46801 * 315.77002 * 16 6 5 38 38 H 1.09004 * 109.47128 * 195.76962 * 16 6 5 39 39 H 1.09002 * 109.46866 * 54.86493 * 17 16 6 40 40 H 1.09004 * 109.47186 * 294.86460 * 17 16 6 41 41 H 1.07997 * 122.53572 * 359.96199 * 19 18 17 42 42 H 1.08001 * 122.53401 * 180.02562 * 20 19 18 43 43 H 1.08002 * 125.20173 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0546 -1.5231 2.3875 7 6 3.6041 -2.9212 2.4096 8 6 3.6993 -3.4576 3.8146 9 1 4.1326 -2.8509 4.5960 10 6 3.2334 -4.7229 4.1025 11 7 2.7054 -5.4616 3.1511 12 14 3.3521 -5.3881 5.8441 13 1 2.5885 -4.5067 6.7636 14 1 2.7853 -6.7599 5.8897 15 1 4.7761 -5.4261 6.2635 16 6 5.5181 -1.4400 2.4826 17 6 5.9204 -0.0383 2.9455 18 6 7.4106 0.0101 3.1644 19 6 8.3137 0.3364 2.2385 20 6 9.6281 0.3123 2.6718 21 6 9.7926 -0.0341 3.9493 22 16 8.2246 -0.3478 4.6819 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9995 0.1675 1.1419 33 1 3.8532 -1.3939 0.3001 34 1 2.5700 -2.9751 2.0693 35 1 4.2352 -3.5166 1.7497 36 1 2.3773 -6.3516 3.3537 37 1 5.9577 -1.6401 1.5054 38 1 5.8780 -2.1770 3.2007 39 1 5.4082 0.1971 3.8784 40 1 5.6412 0.6899 2.1839 41 1 8.0399 0.5993 1.2274 42 1 10.4576 0.5556 2.0244 43 1 10.7428 -0.1059 4.4576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123502871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = -5.160244 kcal Electronic energy + Delta-G solvation = -19846.062290 eV Core-core repulsion = 17016.350097 eV Total energy + Delta-G solvation = -2829.712193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47431 -38.55135 -36.78975 -34.82956 -33.36384 -30.37658 -29.36834 -27.95626 -27.44645 -25.03476 -24.50683 -23.19974 -21.41790 -20.73594 -20.05314 -18.61953 -17.95894 -16.85997 -16.38818 -16.33344 -16.01197 -15.65218 -15.19949 -14.78336 -14.51591 -14.24025 -13.88987 -13.80659 -13.61293 -13.52478 -13.15445 -12.98511 -12.90976 -12.82538 -12.62533 -12.53943 -12.40872 -12.23950 -11.96305 -11.80579 -11.54978 -11.44269 -11.42246 -11.22756 -11.09759 -10.57047 -9.51724 -9.38494 -9.00347 -8.18685 -6.27815 0.13459 0.76962 1.18565 1.39122 1.42052 1.49803 1.89458 2.40099 3.11338 3.24274 3.94470 3.99433 4.05549 4.14835 4.17640 4.29086 4.38963 4.48979 4.56382 4.61196 4.68794 4.72470 4.79371 4.83539 4.89544 4.97990 5.00228 5.06095 5.10249 5.19224 5.22301 5.27675 5.31323 5.32945 5.37206 5.44236 5.55504 5.57910 5.67291 5.68379 6.10455 6.39902 6.66965 6.86982 7.40916 8.91573 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.006273 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.912704 B = 4462.600611 C = 7273.901407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.104 4.104 5 C 0.058 3.942 6 N -0.542 5.542 7 C 0.207 3.793 8 C -0.518 4.518 9 H 0.057 0.943 10 C 0.003 3.997 11 N -0.934 5.934 12 Si 0.962 3.038 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.076 3.924 17 C -0.031 4.031 18 C -0.178 4.178 19 C -0.146 4.146 20 C -0.138 4.138 21 C -0.217 4.217 22 S 0.060 5.940 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.018 0.982 35 H -0.047 1.047 36 H 0.264 0.736 37 H 0.023 0.977 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 15.149 -4.028 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.069 4.069 6 N -0.266 5.266 7 C 0.081 3.919 8 C -0.556 4.556 9 H 0.076 0.924 10 C -0.195 4.195 11 N -0.575 5.575 12 Si 0.786 3.214 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.053 4.053 17 C -0.070 4.070 18 C -0.296 4.296 19 C -0.176 4.176 20 C -0.168 4.168 21 C -0.352 4.352 22 S 0.323 5.677 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.030 0.970 34 H 0.036 0.964 35 H -0.029 1.029 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.315 14.785 -2.199 16.641 hybrid contribution 0.645 -1.114 -1.227 1.779 sum 7.959 13.671 -3.426 16.186 Atomic orbital electron populations 1.21807 0.94720 1.01280 1.02303 1.21079 0.96217 0.97078 0.96795 1.21835 1.01142 0.94625 1.02198 1.21590 0.94583 0.99530 0.98526 1.22212 0.96121 0.98624 0.89977 1.62058 1.09878 1.16214 1.38450 1.19427 0.94054 0.83206 0.95238 1.21416 1.39176 0.99570 0.95456 0.92449 1.25841 0.94961 0.97188 1.01466 1.70067 1.42087 1.10843 1.34485 0.85554 0.78733 0.77348 0.79744 1.19316 1.20691 1.19453 1.21876 0.87919 0.96805 0.98686 1.19993 0.87675 0.96743 1.02599 1.24565 0.99846 1.08341 0.96844 1.20426 0.92423 1.03880 1.00911 1.20446 0.97678 1.02790 0.95880 1.25919 1.00842 1.09258 0.99181 1.84616 0.99951 1.68851 1.14261 0.92592 0.91077 0.93997 0.91845 0.92558 0.92438 0.91479 0.94718 0.92044 0.89087 0.97047 0.96379 1.02917 0.92768 0.95844 0.93178 0.91073 0.88773 0.82974 0.81735 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 2 C -0.09 -2.41 2.92 -10.79 -0.03 -2.44 16 3 C -0.14 -2.93 8.95 71.98 0.64 -2.29 16 4 C -0.10 -3.58 4.65 30.59 0.14 -3.44 16 5 C 0.06 2.07 4.54 86.30 0.39 2.46 16 6 N -0.54 -23.56 4.36 -900.81 -3.92 -27.48 16 7 C 0.21 11.24 4.59 85.55 0.39 11.63 16 8 C -0.52 -30.10 8.51 25.60 0.22 -29.89 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 10 C 0.00 0.19 5.46 84.65 0.46 0.65 16 11 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 12 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.08 2.97 4.79 86.30 0.41 3.39 16 17 C -0.03 -0.94 5.74 29.85 0.17 -0.77 16 18 C -0.18 -5.07 5.76 24.59 0.14 -4.93 16 19 C -0.15 -3.52 10.05 21.22 0.21 -3.30 16 20 C -0.14 -2.86 10.18 21.22 0.22 -2.64 16 21 C -0.22 -4.67 11.23 66.72 0.75 -3.92 16 22 S 0.06 1.66 23.33 -56.49 -1.32 0.34 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.17 6.56 -2.38 -0.02 1.15 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.03 1.43 6.25 -2.39 -0.01 1.41 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.67 5.14 -2.38 -0.01 2.66 16 33 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 34 H 0.02 1.06 5.88 -2.39 -0.01 1.04 16 35 H -0.05 -2.79 8.01 -2.38 -0.02 -2.81 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.02 0.89 8.00 -2.38 -0.02 0.88 16 38 H 0.05 2.27 7.23 -2.38 -0.02 2.25 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.09 2.48 6.96 -2.38 -0.02 2.46 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.54 355.91 2.81 -62.73 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.95 Total: 12.16 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.79 Total: -38.25 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.64 Total: -84.43 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Total: -65.54 2.81 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123502871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.567 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds