Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47652 * 2 1 4 4 H 1.09001 * 109.47066 * 302.74007 * 3 2 1 5 5 C 1.50700 * 109.47326 * 182.73367 * 3 2 1 6 6 H 1.07994 * 119.99755 * 245.74239 * 5 3 2 7 7 C 1.37874 * 119.99895 * 65.74974 * 5 3 2 8 8 N 1.31513 * 119.99879 * 193.23488 * 7 5 3 9 9 Si 1.86796 * 120.00235 * 13.22874 * 7 5 3 10 10 H 1.48497 * 109.47399 * 85.85060 * 9 7 5 11 11 H 1.48496 * 109.47267 * 205.85355 * 9 7 5 12 12 H 1.48500 * 109.47125 * 325.85124 * 9 7 5 13 13 N 1.46907 * 109.46802 * 62.73055 * 3 2 1 14 14 C 1.46903 * 111.00086 * 208.74600 * 13 3 2 15 15 H 1.08995 * 109.47022 * 328.72174 * 14 13 3 16 16 C 1.53001 * 109.46716 * 88.71939 * 14 13 3 17 17 C 1.50698 * 109.47094 * 208.72005 * 14 13 3 18 18 C 1.38381 * 120.03857 * 314.72819 * 17 14 13 19 19 F 1.35099 * 120.00024 * 359.97318 * 18 17 14 20 20 C 1.38478 * 120.00421 * 179.72739 * 18 17 14 21 21 C 1.38260 * 120.08151 * 0.54491 * 20 18 17 22 22 C 1.38125 * 120.08049 * 359.73366 * 21 20 18 23 23 C 1.38667 * 120.03712 * 135.00347 * 17 14 13 24 24 O 1.35892 * 120.04588 * 0.02562 * 23 17 14 25 25 C 1.42902 * 117.00114 * 180.02562 * 24 23 17 26 26 H 1.08995 * 109.47081 * 174.98434 * 1 2 3 27 27 H 1.09002 * 109.46843 * 54.97490 * 1 2 3 28 28 H 1.09003 * 109.46407 * 294.97996 * 1 2 3 29 29 H 1.09000 * 109.47158 * 120.00678 * 2 1 3 30 30 H 1.09004 * 109.46829 * 239.99768 * 2 1 3 31 31 H 0.96994 * 120.00388 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99407 * 84.79996 * 13 3 2 33 33 H 1.09000 * 109.46900 * 64.91266 * 16 14 13 34 34 H 1.09004 * 109.46730 * 184.91293 * 16 14 13 35 35 H 1.09003 * 109.47131 * 304.90672 * 16 14 13 36 36 H 1.07994 * 119.96306 * 180.27624 * 20 18 17 37 37 H 1.08003 * 119.95312 * 179.70270 * 21 20 18 38 38 H 1.07998 * 120.00057 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47093 * 59.99982 * 25 24 23 40 40 H 1.09001 * 109.47110 * 180.02562 * 25 24 23 41 41 H 1.09001 * 109.47143 * 300.00023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6373 1.9703 -0.8644 5 6 3.5456 1.4429 -0.0678 6 1 4.1235 1.8137 0.7658 7 6 4.1851 0.9700 -1.1940 8 7 5.4768 0.7250 -1.1626 9 14 3.2169 0.6773 -2.7643 10 1 3.1341 1.9421 -3.5380 11 1 3.8991 -0.3586 -3.5808 12 1 1.8474 0.2155 -2.4227 13 7 1.6051 2.1156 1.2311 14 6 1.4476 3.5599 1.0139 15 1 2.1607 3.8939 0.2603 16 6 0.0243 3.8511 0.5339 17 6 1.7019 4.2929 2.3059 18 6 1.1391 3.8351 3.4843 19 9 0.3608 2.7309 3.4770 20 6 1.3779 4.5059 4.6720 21 6 2.1691 5.6397 4.6807 22 6 2.7278 6.1030 3.5055 23 6 2.4954 5.4300 2.3142 24 8 3.0442 5.8852 1.1574 25 6 3.8510 7.0618 1.2410 26 1 -0.3633 -1.0237 -0.0898 27 1 -0.3633 0.5898 -0.8416 28 1 -0.3632 0.4340 0.9316 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 5.9267 0.3920 -1.9548 32 1 2.2451 1.9317 1.9893 33 1 -0.6841 3.5978 1.3226 34 1 -0.0672 4.9095 0.2894 35 1 -0.1896 3.2537 -0.3524 36 1 0.9420 4.1455 5.5921 37 1 2.3500 6.1640 5.6074 38 1 3.3453 6.9890 3.5136 39 1 4.6907 6.8796 1.9118 40 1 4.2259 7.3164 0.2497 41 1 3.2513 7.8869 1.6252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129159869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -77.065481 kcal Electronic energy + Delta-G solvation = -23167.182637 eV Core-core repulsion = 19768.139223 eV Total energy + Delta-G solvation = -3399.043414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.69548 -41.21859 -38.72347 -37.93231 -35.31426 -33.92722 -31.49657 -30.76395 -30.08106 -28.30911 -28.09458 -24.85781 -24.01544 -23.21010 -21.71269 -21.23559 -19.34811 -19.03153 -17.96523 -17.01671 -16.97617 -16.80585 -16.70680 -16.20125 -15.81430 -15.45406 -15.34572 -15.06194 -14.72784 -14.11220 -13.95088 -13.75014 -13.60471 -13.38223 -13.24340 -13.04724 -12.84827 -12.80578 -12.55447 -12.49868 -12.28103 -12.12847 -11.91801 -11.58496 -11.46577 -11.33929 -11.02156 -10.61489 -9.63963 -9.21792 -9.05119 -8.33664 -6.34404 0.18641 0.33716 1.31822 1.34503 1.45110 2.28163 2.32813 2.62269 3.01915 3.44844 3.52689 3.70280 4.01009 4.08047 4.15344 4.37579 4.38627 4.43076 4.45390 4.55821 4.60643 4.64432 4.71106 4.74464 4.87932 4.95324 5.00367 5.09181 5.18069 5.22640 5.27862 5.31788 5.36997 5.46028 5.54389 5.55789 5.73081 5.83633 6.10692 6.39066 6.45686 6.62568 6.79255 7.32577 8.83059 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.006576 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.160191 B = 4256.616045 C = 5149.173958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C 0.196 3.804 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.024 0.976 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.220 1.220 13 N -0.655 5.655 14 C 0.134 3.866 15 H 0.032 0.968 16 C -0.120 4.120 17 C -0.180 4.180 18 C 0.136 3.864 19 F -0.129 7.129 20 C -0.198 4.198 21 C -0.045 4.045 22 C -0.220 4.220 23 C 0.143 3.857 24 O -0.337 6.337 25 C 0.019 3.981 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.324 0.676 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.158 0.842 37 H 0.174 0.826 38 H 0.161 0.839 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 13.067 9.543 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.040 0.960 5 C -0.583 4.583 6 H 0.042 0.958 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.142 1.142 13 N -0.283 5.283 14 C 0.024 3.976 15 H 0.050 0.950 16 C -0.178 4.178 17 C -0.182 4.182 18 C 0.117 3.883 19 F -0.108 7.108 20 C -0.216 4.216 21 C -0.063 4.063 22 C -0.238 4.238 23 C 0.097 3.903 24 O -0.251 6.251 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.178 0.822 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.824 12.748 9.128 18.503 hybrid contribution 1.470 -0.101 -0.975 1.767 sum -8.354 12.647 8.153 17.210 Atomic orbital electron populations 1.21592 0.94912 1.00450 1.01668 1.21787 0.96058 0.97331 0.99856 1.19389 0.90745 0.92105 0.89197 0.95958 1.21953 0.92623 1.41910 1.01863 0.95755 1.25792 0.95567 0.94038 1.02296 1.70116 1.11604 1.46131 1.30374 0.86277 0.81772 0.78123 0.79106 1.20377 1.21237 1.14235 1.60999 1.52441 1.07560 1.07327 1.20088 0.97357 0.87745 0.92389 0.94970 1.21662 0.94734 1.00397 1.00962 1.19490 1.04237 0.98556 0.95965 1.17428 0.92349 0.84852 0.93716 1.91522 1.71728 1.50339 1.97165 1.21373 1.04672 0.98737 0.96854 1.21187 0.92649 0.93757 0.98725 1.21581 1.06873 1.03913 0.91476 1.18799 0.92292 0.92744 0.86473 1.86137 1.63557 1.45385 1.29997 1.23372 0.94138 0.84855 1.05185 0.92832 0.93954 0.91939 0.93895 0.93736 0.92686 0.85993 0.92113 0.92212 0.92957 0.82477 0.80834 0.82174 0.91770 0.87408 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.72 71.98 0.70 -4.00 16 2 C -0.11 -4.99 4.99 30.59 0.15 -4.84 16 3 C 0.20 9.50 1.36 44.17 0.06 9.56 16 4 H 0.02 1.12 6.11 -2.39 -0.01 1.10 16 5 C -0.54 -31.99 8.92 25.60 0.23 -31.76 16 6 H 0.02 1.60 7.89 -2.91 -0.02 1.58 16 7 C 0.02 1.28 5.37 84.65 0.45 1.73 16 8 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.92 44.77 25.87 68.60 1.77 46.54 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.22 -9.66 5.31 99.48 0.53 -9.14 16 13 N -0.65 -28.54 4.32 -477.15 -2.06 -30.60 16 14 C 0.13 5.40 2.37 44.17 0.10 5.50 16 15 H 0.03 1.52 6.71 -2.39 -0.02 1.51 16 16 C -0.12 -4.13 9.41 71.98 0.68 -3.45 16 17 C -0.18 -6.36 4.68 -19.73 -0.09 -6.45 16 18 C 0.14 4.30 6.66 22.36 0.15 4.45 16 19 F -0.13 -4.43 15.17 44.97 0.68 -3.75 16 20 C -0.20 -4.65 10.02 22.33 0.22 -4.43 16 21 C -0.05 -0.87 10.04 22.25 0.22 -0.65 16 22 C -0.22 -4.97 9.04 22.37 0.20 -4.77 16 23 C 0.14 4.51 6.66 22.50 0.15 4.66 16 24 O -0.34 -11.06 9.33 -92.33 -0.86 -11.92 16 25 C 0.02 0.39 9.81 113.37 1.11 1.50 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.25 7.83 -2.39 -0.02 2.23 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 2.04 4.70 -2.38 -0.01 2.03 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.32 15.14 7.44 -89.69 -0.67 14.48 16 33 H 0.06 2.00 7.51 -2.39 -0.02 1.98 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.16 2.55 6.30 -2.91 -0.02 2.53 16 39 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 Total: -1.00 -71.29 329.92 4.36 -66.93 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.19 Total: 25.50 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.35 Total: -32.95 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -1.76 Total: -90.35 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.86 Total: -11.92 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.68 Total: -3.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.77 Total: 46.54 kcal Total: -71.29 4.36 -66.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129159869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.136 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds