Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52995 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47411 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47426 * 305.00290 * 5 4 3 7 7 C 1.52998 * 109.47426 * 184.99760 * 5 4 3 8 8 N 1.46504 * 109.46763 * 65.00130 * 5 4 3 9 9 C 1.39933 * 119.99619 * 205.27778 * 8 5 4 10 10 C 1.38708 * 120.07951 * 359.72451 * 9 8 5 11 11 C 1.38220 * 120.01596 * 179.97438 * 10 9 8 12 12 C 1.38533 * 120.17471 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.92070 * 179.97438 * 12 11 10 14 14 C 1.38348 * 120.15908 * 0.02562 * 12 11 10 15 15 C 1.38727 * 119.98195 * 359.70023 * 14 12 11 16 16 O 1.35795 * 120.08789 * 180.29543 * 15 14 12 17 17 C 1.34805 * 117.00333 * 354.40234 * 16 15 14 18 18 H 1.07994 * 119.99467 * 5.06186 * 17 16 15 19 19 C 1.38625 * 119.99939 * 185.05943 * 17 16 15 20 20 N 1.31578 * 120.00437 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47150 * 60.00293 * 21 19 17 23 23 H 1.48497 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47304 * 300.00194 * 21 19 17 25 25 H 1.08996 * 109.47049 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.47411 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47306 * 300.00363 * 1 2 3 28 28 H 1.08999 * 109.47354 * 239.99903 * 2 1 3 29 29 H 1.09001 * 109.47497 * 119.99694 * 2 1 3 30 30 H 1.08994 * 109.47427 * 59.99460 * 3 2 1 31 31 H 1.09005 * 109.47090 * 299.99652 * 3 2 1 32 32 H 1.09008 * 109.47306 * 59.99637 * 4 3 2 33 33 H 1.09001 * 109.47497 * 299.99694 * 4 3 2 34 34 H 1.08993 * 109.47421 * 300.00080 * 7 5 4 35 35 H 1.09002 * 109.47123 * 60.00112 * 7 5 4 36 36 H 1.09000 * 109.47418 * 180.02562 * 7 5 4 37 37 H 0.97001 * 120.00265 * 24.99758 * 8 5 4 38 38 H 1.07998 * 119.99935 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.91195 * 180.02562 * 11 10 9 40 40 H 1.08001 * 120.00887 * 179.97438 * 14 12 11 41 41 H 0.96995 * 120.00266 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4236 -0.8423 7 6 5.6049 2.8867 -0.1250 8 7 3.6919 3.5407 1.2513 9 6 3.5546 4.9324 1.2985 10 6 3.7911 5.6933 0.1631 11 6 3.6546 7.0679 0.2111 12 6 3.2811 7.6897 1.3913 13 9 3.1497 9.0337 1.4326 14 6 3.0435 6.9379 2.5281 15 6 3.1730 5.5574 2.4859 16 8 2.9344 4.8168 3.5988 17 6 2.6889 5.4898 4.7408 18 1 2.6071 6.5666 4.7260 19 6 2.5413 4.7997 5.9340 20 7 2.6414 3.4879 5.9521 21 14 2.2004 5.7323 7.5162 22 1 0.9303 6.4898 7.3804 23 1 2.0861 4.7712 8.6424 24 1 3.3143 6.6774 7.7837 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 6.0391 2.3482 0.7172 35 1 5.8937 2.3988 -1.0560 36 1 5.9683 3.9144 -0.1250 37 1 3.5262 3.0097 2.0460 38 1 4.0812 5.2115 -0.7589 39 1 3.8387 7.6586 -0.6741 40 1 2.7529 7.4253 3.4470 41 1 2.5386 3.0051 6.7870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136891720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = -71.381569 kcal Electronic energy + Delta-G solvation = -22135.993308 eV Core-core repulsion = 18737.196367 eV Total energy + Delta-G solvation = -3398.796941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.02673 -39.29099 -37.44434 -36.06422 -34.38614 -32.31319 -31.36765 -29.27746 -28.70693 -27.09834 -25.37666 -23.99169 -22.33427 -21.25512 -20.91931 -20.05246 -18.15620 -17.61627 -16.37913 -15.84458 -15.19345 -15.11552 -14.82225 -14.47979 -14.25253 -14.11934 -13.84316 -13.55427 -13.34191 -12.95667 -12.78379 -12.75207 -12.23736 -12.16677 -12.06106 -11.73494 -11.41737 -11.36307 -11.17283 -10.99901 -10.94529 -10.68853 -10.55602 -10.44658 -10.36555 -10.26183 -9.56688 -9.20909 -8.84100 -7.71406 -6.47563 -6.39791 -4.02185 2.14780 2.26661 3.13730 3.14636 3.16876 3.93761 4.06274 4.49207 4.73880 4.97989 5.03671 5.08745 5.11617 5.27286 5.30848 5.39154 5.47501 5.57352 5.65164 5.77393 5.80595 5.86433 5.89302 5.93532 5.97752 6.06312 6.14478 6.18348 6.22687 6.38209 6.43138 6.53030 6.55629 6.62228 6.84213 7.05355 7.12738 7.26888 7.65492 7.94432 8.09593 8.47590 8.99376 9.65892 10.70495 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.006134 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.201278 B = 4563.475482 C = 6376.367651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.125 4.125 5 C 0.153 3.847 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.737 5.737 9 C 0.158 3.842 10 C -0.149 4.149 11 C -0.195 4.195 12 C 0.083 3.917 13 F -0.158 7.158 14 C -0.241 4.241 15 C 0.120 3.880 16 O -0.176 6.176 17 C -0.386 4.386 18 H 0.090 0.910 19 C 0.041 3.959 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -4.036 -11.174 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.163 4.163 5 C 0.047 3.953 6 H 0.090 0.910 7 C -0.228 4.228 8 N -0.371 5.371 9 C 0.057 3.943 10 C -0.173 4.173 11 C -0.215 4.215 12 C 0.062 3.938 13 F -0.137 7.137 14 C -0.262 4.262 15 C 0.064 3.936 16 O -0.080 6.080 17 C -0.462 4.462 18 H 0.108 0.892 19 C -0.163 4.163 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.972 -4.489 -11.111 12.023 hybrid contribution -0.220 0.653 1.139 1.332 sum 0.752 -3.836 -9.972 10.711 Atomic orbital electron populations 1.21773 0.96107 1.01171 1.01988 1.21521 0.95789 0.97211 1.01552 1.21608 0.94974 0.96376 1.02816 1.21860 0.96090 0.95917 1.02387 1.20769 0.93725 0.92746 0.88044 0.91000 1.22313 0.96868 1.02363 1.01248 1.44461 1.77683 1.02881 1.12085 1.17101 1.01168 0.84215 0.91863 1.19956 1.08409 0.92554 0.96380 1.20299 1.10002 0.94608 0.96575 1.17225 1.05411 0.76087 0.95047 1.91373 1.94225 1.30847 1.97304 1.20788 1.12876 0.93630 0.98930 1.18610 0.97485 0.89414 0.88059 1.83889 1.76995 1.33167 1.13977 1.21229 1.49953 0.92201 0.82859 0.89232 1.25219 0.96810 0.95880 0.98441 1.70008 1.46026 1.06091 1.27786 0.85805 0.79296 0.78732 0.79795 1.19514 1.20329 1.19514 0.92983 0.93155 0.92449 0.92557 0.92071 0.90962 0.92312 0.91244 0.91446 0.92465 0.92631 0.92202 0.75625 0.86113 0.86661 0.84553 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.36 5.93 -26.73 -0.16 -1.52 16 3 C -0.12 -1.50 5.10 -26.73 -0.14 -1.64 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.60 16 5 C 0.15 2.07 2.27 -67.93 -0.15 1.91 16 6 H 0.07 0.94 6.48 -51.93 -0.34 0.60 16 7 C -0.17 -2.11 9.44 37.16 0.35 -1.76 16 8 N -0.74 -13.02 4.70 -51.99 -0.24 -13.27 16 9 C 0.16 3.17 6.66 -83.52 -0.56 2.61 16 10 C -0.15 -2.64 8.87 -39.41 -0.35 -2.99 16 11 C -0.19 -3.55 10.02 -39.48 -0.40 -3.94 16 12 C 0.08 1.71 7.29 -39.43 -0.29 1.42 16 13 F -0.16 -3.17 17.26 2.25 0.04 -3.13 16 14 C -0.24 -5.45 9.14 -39.36 -0.36 -5.81 16 15 C 0.12 2.81 6.67 -38.93 -0.26 2.55 16 16 O -0.18 -4.74 9.00 -0.02 0.00 -4.74 16 17 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 18 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.38 13.67 55.48 0.76 -23.63 16 21 Si 0.94 20.43 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.81 7.73 -51.93 -0.40 0.41 16 37 H 0.41 8.00 7.97 -40.82 -0.33 7.67 16 38 H 0.12 1.79 6.12 -52.49 -0.32 1.47 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.14 3.13 5.64 -52.49 -0.30 2.84 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -28.28 341.24 -7.34 -35.62 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.14 Total: 9.92 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.87 Total: -21.31 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.51 Total: -36.89 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.28 -7.34 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136891720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.766 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds