Wall clock time and date at job start Tue Mar 31 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52995 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47411 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47426 * 305.00290 * 5 4 3 7 7 C 1.52998 * 109.47426 * 184.99760 * 5 4 3 8 8 N 1.46504 * 109.46763 * 65.00130 * 5 4 3 9 9 C 1.39933 * 119.99619 * 205.27778 * 8 5 4 10 10 C 1.38708 * 120.07951 * 359.72451 * 9 8 5 11 11 C 1.38220 * 120.01596 * 179.97438 * 10 9 8 12 12 C 1.38533 * 120.17471 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.92070 * 179.97438 * 12 11 10 14 14 C 1.38348 * 120.15908 * 0.02562 * 12 11 10 15 15 C 1.38727 * 119.98195 * 359.70023 * 14 12 11 16 16 O 1.35795 * 120.08789 * 180.29543 * 15 14 12 17 17 C 1.34805 * 117.00333 * 354.40234 * 16 15 14 18 18 H 1.07994 * 119.99467 * 5.06186 * 17 16 15 19 19 C 1.38625 * 119.99939 * 185.05943 * 17 16 15 20 20 N 1.31578 * 120.00437 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47150 * 60.00293 * 21 19 17 23 23 H 1.48497 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47304 * 300.00194 * 21 19 17 25 25 H 1.08996 * 109.47049 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.47411 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47306 * 300.00363 * 1 2 3 28 28 H 1.08999 * 109.47354 * 239.99903 * 2 1 3 29 29 H 1.09001 * 109.47497 * 119.99694 * 2 1 3 30 30 H 1.08994 * 109.47427 * 59.99460 * 3 2 1 31 31 H 1.09005 * 109.47090 * 299.99652 * 3 2 1 32 32 H 1.09008 * 109.47306 * 59.99637 * 4 3 2 33 33 H 1.09001 * 109.47497 * 299.99694 * 4 3 2 34 34 H 1.08993 * 109.47421 * 300.00080 * 7 5 4 35 35 H 1.09002 * 109.47123 * 60.00112 * 7 5 4 36 36 H 1.09000 * 109.47418 * 180.02562 * 7 5 4 37 37 H 0.97001 * 120.00265 * 24.99758 * 8 5 4 38 38 H 1.07998 * 119.99935 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.91195 * 180.02562 * 11 10 9 40 40 H 1.08001 * 120.00887 * 179.97438 * 14 12 11 41 41 H 0.96995 * 120.00266 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4236 -0.8423 7 6 5.6049 2.8867 -0.1250 8 7 3.6919 3.5407 1.2513 9 6 3.5546 4.9324 1.2985 10 6 3.7911 5.6933 0.1631 11 6 3.6546 7.0679 0.2111 12 6 3.2811 7.6897 1.3913 13 9 3.1497 9.0337 1.4326 14 6 3.0435 6.9379 2.5281 15 6 3.1730 5.5574 2.4859 16 8 2.9344 4.8168 3.5988 17 6 2.6889 5.4898 4.7408 18 1 2.6071 6.5666 4.7260 19 6 2.5413 4.7997 5.9340 20 7 2.6414 3.4879 5.9521 21 14 2.2004 5.7323 7.5162 22 1 0.9303 6.4898 7.3804 23 1 2.0861 4.7712 8.6424 24 1 3.3143 6.6774 7.7837 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 6.0391 2.3482 0.7172 35 1 5.8937 2.3988 -1.0560 36 1 5.9683 3.9144 -0.1250 37 1 3.5262 3.0097 2.0460 38 1 4.0812 5.2115 -0.7589 39 1 3.8387 7.6586 -0.6741 40 1 2.7529 7.4253 3.4470 41 1 2.5386 3.0051 6.7870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136891720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:39 Heat of formation + Delta-G solvation = -86.318010 kcal Electronic energy + Delta-G solvation = -22136.641001 eV Core-core repulsion = 18737.196367 eV Total energy + Delta-G solvation = -3399.444634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.62684 -40.93086 -38.85806 -37.55586 -35.51904 -34.26775 -32.66063 -30.92741 -29.71538 -28.62498 -27.29938 -24.99551 -23.89841 -22.82260 -21.88292 -21.31247 -19.97897 -19.31655 -17.84369 -17.33190 -16.94554 -16.44892 -16.28409 -15.96750 -15.72936 -15.42244 -15.38969 -15.05315 -14.92436 -14.21082 -14.00545 -13.89325 -13.73576 -13.52771 -13.28785 -13.19507 -12.95320 -12.66625 -12.52466 -12.24080 -12.16574 -12.10092 -11.90340 -11.74843 -11.49417 -11.37247 -11.31874 -10.78517 -10.64637 -9.41052 -8.46044 -7.97174 -6.07995 0.50908 0.64317 1.34449 1.43328 1.48525 2.16423 2.66809 2.79160 3.12149 3.35826 3.66968 3.74868 4.00472 4.09212 4.11953 4.25358 4.31992 4.44523 4.50397 4.52629 4.61223 4.71112 4.85294 4.91226 4.96092 4.98649 5.03723 5.08289 5.10231 5.16263 5.22339 5.30256 5.36118 5.43371 5.46101 5.46744 5.51704 5.53847 5.97991 6.07569 6.64741 6.89267 6.99733 7.77249 8.75511 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.006134 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.201278 B = 4563.475482 C = 6376.367651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.087 0.913 7 C -0.164 4.164 8 N -0.738 5.738 9 C 0.160 3.840 10 C -0.139 4.139 11 C -0.163 4.163 12 C 0.060 3.940 13 F -0.157 7.157 14 C -0.247 4.247 15 C 0.077 3.923 16 O -0.215 6.215 17 C -0.409 4.409 18 H 0.091 0.909 19 C -0.015 4.015 20 N -0.911 5.911 21 Si 1.009 2.991 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.262 1.262 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.394 0.606 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -3.905 -14.057 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.155 4.155 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.105 0.895 7 C -0.222 4.222 8 N -0.369 5.369 9 C 0.057 3.943 10 C -0.163 4.163 11 C -0.183 4.183 12 C 0.039 3.961 13 F -0.136 7.136 14 C -0.268 4.268 15 C 0.024 3.976 16 O -0.122 6.122 17 C -0.485 4.485 18 H 0.108 0.892 19 C -0.213 4.213 20 N -0.549 5.549 21 Si 0.829 3.171 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.187 1.187 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.227 0.773 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.138 0.862 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.722 -4.347 -14.061 14.818 hybrid contribution -0.394 0.654 1.733 1.894 sum 1.328 -3.693 -12.328 12.937 Atomic orbital electron populations 1.21784 0.96108 1.01883 1.01359 1.21509 0.95826 0.96287 1.02201 1.21562 0.95601 0.97056 1.01296 1.21841 0.95386 0.94981 1.03361 1.21112 0.94756 0.93517 0.86291 0.89497 1.22265 0.95466 1.02027 1.02479 1.44755 1.76875 1.02053 1.13172 1.17427 0.99905 0.85571 0.91398 1.20402 1.06758 0.92330 0.96777 1.20804 1.05834 0.95035 0.96627 1.17325 1.07155 0.76257 0.95366 1.91373 1.94356 1.30514 1.97316 1.20849 1.12795 0.93809 0.99391 1.19103 0.99839 0.90073 0.88585 1.83858 1.79575 1.34051 1.14705 1.21597 1.50522 0.92569 0.83834 0.89153 1.26333 0.96483 0.96841 1.01636 1.70135 1.48369 1.07738 1.28683 0.84783 0.79449 0.77551 0.75332 1.18643 1.19387 1.18680 0.92176 0.91801 0.94513 0.90240 0.92976 0.94773 0.91453 0.87938 0.92638 0.93757 0.89271 0.93085 0.77273 0.82077 0.82659 0.86226 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.50 16 2 C -0.12 -2.52 5.93 30.59 0.18 -2.33 16 3 C -0.12 -2.82 5.10 30.59 0.16 -2.66 16 4 C -0.12 -2.54 4.75 30.59 0.15 -2.40 16 5 C 0.15 3.63 2.27 44.99 0.10 3.73 16 6 H 0.09 1.91 6.48 -2.39 -0.02 1.89 16 7 C -0.16 -3.60 9.44 71.98 0.68 -2.92 16 8 N -0.74 -26.08 4.70 -318.40 -1.50 -27.58 16 9 C 0.16 6.36 6.66 38.26 0.25 6.62 16 10 C -0.14 -4.47 8.87 22.38 0.20 -4.27 16 11 C -0.16 -5.38 10.02 22.34 0.22 -5.15 16 12 C 0.06 2.41 7.29 22.37 0.16 2.57 16 13 F -0.16 -6.08 17.26 44.97 0.78 -5.30 16 14 C -0.25 -11.52 9.14 22.41 0.20 -11.32 16 15 C 0.08 3.75 6.67 22.69 0.15 3.90 16 16 O -0.22 -12.35 9.00 -22.99 -0.21 -12.55 16 17 C -0.41 -23.67 9.49 67.91 0.64 -23.02 16 18 H 0.09 4.99 5.21 -2.91 -0.02 4.97 16 19 C -0.01 -0.82 5.49 84.82 0.47 -0.36 16 20 N -0.91 -54.16 13.67 21.61 0.30 -53.87 16 21 Si 1.01 43.29 29.55 68.60 2.03 45.32 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.21 7.73 -2.39 -0.02 1.19 16 37 H 0.39 16.26 7.97 -92.71 -0.74 15.52 16 38 H 0.16 3.91 6.12 -2.91 -0.02 3.89 16 39 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.12 5.84 5.64 -2.91 -0.02 5.82 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -65.69 341.24 5.97 -59.72 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.29 Total: 34.37 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.28 Total: -40.11 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.20 Total: -81.44 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.21 Total: -12.55 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.78 Total: -5.30 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.69 5.97 -59.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136891720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.596 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds