Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00339 * 2 1 4 4 C 1.52994 * 109.47353 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47535 * 67.03529 * 4 3 2 6 6 C 1.46900 * 110.99856 * 289.93935 * 5 4 3 7 7 C 1.50701 * 109.46850 * 299.65788 * 6 5 4 8 8 H 1.08001 * 120.00249 * 354.97034 * 7 6 5 9 9 C 1.37878 * 119.99638 * 174.96505 * 7 6 5 10 10 N 1.31520 * 119.99950 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00281 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47028 * 90.00073 * 11 9 7 13 13 H 1.48499 * 109.47496 * 210.00076 * 11 9 7 14 14 H 1.48497 * 109.47214 * 330.00138 * 11 9 7 15 15 C 1.46895 * 110.99861 * 53.88888 * 5 4 3 16 16 C 1.53000 * 109.47002 * 66.05064 * 15 5 4 17 17 C 1.50704 * 109.47133 * 179.97438 * 16 15 5 18 18 C 1.38215 * 120.00986 * 100.00109 * 17 16 15 19 19 C 1.38231 * 120.02427 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.05129 * 0.02562 * 19 18 17 21 21 C 1.38176 * 120.02371 * 359.97438 * 20 19 18 22 22 C 1.38439 * 120.01300 * 279.71942 * 17 16 15 23 23 F 1.35102 * 120.02811 * 0.02562 * 22 17 16 24 24 H 1.09004 * 109.47287 * 60.00151 * 1 2 3 25 25 H 1.09006 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47007 * 299.99869 * 1 2 3 27 27 H 1.08992 * 109.46841 * 59.99862 * 3 2 1 28 28 H 1.09007 * 109.46550 * 300.00205 * 3 2 1 29 29 H 1.08998 * 109.46878 * 307.03097 * 4 3 2 30 30 H 1.09005 * 109.46994 * 187.03635 * 4 3 2 31 31 H 1.08994 * 109.47517 * 59.65770 * 6 5 4 32 32 H 1.08996 * 109.47379 * 179.66251 * 6 5 4 33 33 H 0.96995 * 120.00202 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47687 * 306.04964 * 15 5 4 35 35 H 1.09005 * 109.46993 * 186.04679 * 15 5 4 36 36 H 1.09000 * 109.47274 * 60.00191 * 16 15 5 37 37 H 1.08997 * 109.47385 * 299.99224 * 16 15 5 38 38 H 1.07998 * 119.99305 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.97190 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.98720 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.01604 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9805 0.6075 -1.2761 6 6 3.6020 -0.8086 -1.3737 7 6 4.2473 -1.5795 -0.2511 8 1 4.9396 -1.0859 0.4149 9 6 3.9537 -2.9150 -0.0741 10 7 4.5165 -3.5877 0.9059 11 14 2.7568 -3.7689 -1.2263 12 1 3.5003 -4.3404 -2.3776 13 1 2.0597 -4.8587 -0.4971 14 1 1.7587 -2.7865 -1.7201 15 6 3.4523 1.3731 -2.4131 16 6 4.0665 2.7744 -2.4137 17 6 3.5252 3.5597 -3.5805 18 6 2.5055 4.4723 -3.3860 19 6 2.0091 5.1931 -4.4560 20 6 2.5315 5.0018 -5.7218 21 6 3.5509 4.0900 -5.9185 22 6 4.0530 3.3715 -4.8464 23 9 5.0532 2.4835 -5.0367 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8490 0.5388 0.8195 30 1 3.9782 2.1727 0.1252 31 1 2.5183 -0.9008 -1.3019 32 1 3.9382 -1.2095 -2.3299 33 1 4.3103 -4.5273 1.0302 34 1 2.3686 1.4515 -2.3264 35 1 3.7066 0.8645 -3.3431 36 1 5.1503 2.6961 -2.5004 37 1 3.8122 3.2830 -1.4838 38 1 2.0964 4.6223 -2.3979 39 1 1.2121 5.9057 -4.3032 40 1 2.1426 5.5652 -6.5571 41 1 3.9585 3.9404 -6.9074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137589217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -52.838773 kcal Electronic energy + Delta-G solvation = -22555.059087 eV Core-core repulsion = 19157.066222 eV Total energy + Delta-G solvation = -3397.992865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.82942 -39.30222 -38.27983 -36.08806 -33.33199 -32.14655 -30.66760 -29.29513 -28.83909 -26.37185 -25.60689 -23.51698 -22.87577 -22.27588 -20.89615 -19.26558 -17.59229 -16.83898 -16.52939 -16.19329 -15.94065 -15.84229 -15.52602 -14.55237 -14.54073 -14.27532 -14.12281 -13.79875 -13.32706 -12.96879 -12.91123 -12.70817 -12.22042 -12.15087 -12.03892 -11.72760 -11.55298 -11.24999 -11.14044 -10.97635 -10.62992 -10.59450 -10.26564 -10.06024 -9.70966 -9.13335 -9.08339 -9.01779 -8.67114 -8.37426 -7.17361 -5.88010 -3.81528 1.05036 1.07654 3.40741 3.45746 3.46982 3.52963 4.21781 4.28148 4.54516 4.59505 4.64628 4.76869 5.03349 5.10373 5.21745 5.38383 5.45627 5.47335 5.52911 5.62325 5.65208 5.70257 5.76110 5.84311 5.93480 5.98026 6.00129 6.00744 6.12078 6.18752 6.25279 6.41635 6.45757 6.77056 6.80336 7.10052 7.43108 7.69868 7.77358 8.02497 8.19473 8.82477 9.18432 9.76151 11.25684 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.004822 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.422035 B = 5805.444590 C = 6345.988868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.023 3.977 4 C 0.058 3.942 5 N -0.521 5.521 6 C 0.149 3.851 7 C -0.491 4.491 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.909 5.909 11 Si 0.872 3.128 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.055 3.945 16 C -0.079 4.079 17 C -0.105 4.105 18 C -0.092 4.092 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.155 4.155 22 C 0.102 3.898 23 F -0.133 7.133 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 18.481 -9.725 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C -0.056 4.056 4 C -0.070 4.070 5 N -0.244 5.244 6 C 0.024 3.976 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.549 5.549 11 Si 0.700 3.300 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.074 4.074 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.174 4.174 22 C 0.083 3.917 23 F -0.111 7.111 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.952 18.098 -9.670 21.666 hybrid contribution -1.631 -0.534 -0.657 1.838 sum -8.583 17.564 -10.328 22.110 Atomic orbital electron populations 1.22703 0.83618 1.02180 0.98678 1.88395 1.17446 1.26383 1.94659 1.23382 0.97639 0.85708 0.98839 1.22283 0.89226 0.99983 0.95537 1.62136 1.58115 1.04425 0.99718 1.20477 0.96676 0.83300 0.97195 1.20942 1.25263 0.94196 1.12527 0.90563 1.24798 0.95811 0.97294 0.95146 1.69901 1.44490 1.09107 1.31396 0.86896 0.82409 0.79382 0.81289 1.20727 1.21653 1.18847 1.22073 0.96493 0.92697 0.96130 1.20623 1.01662 0.94978 0.94406 1.20130 0.97618 0.98701 0.94208 1.20990 0.95340 0.95105 0.99545 1.21179 1.00627 1.00391 0.92760 1.20953 0.95977 0.97596 0.97476 1.21154 0.99286 0.98467 0.98478 1.17637 0.88836 0.91289 0.93979 1.91531 1.57973 1.65833 1.95788 0.95199 0.90205 0.94831 0.94255 0.93968 0.87961 0.91109 0.95166 0.96909 0.93041 0.95120 0.91511 0.89693 0.90651 0.85233 0.85593 0.85360 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.35 -7.11 7.58 -35.23 -0.27 -7.38 16 3 C 0.02 0.39 5.69 37.15 0.21 0.60 16 4 C 0.06 1.10 5.36 -3.83 -0.02 1.08 16 5 N -0.52 -10.95 4.75 -236.08 -1.12 -12.08 16 6 C 0.15 3.73 3.39 -4.98 -0.02 3.71 16 7 C -0.49 -14.23 8.77 -34.44 -0.30 -14.54 16 8 H 0.08 2.39 7.23 -52.49 -0.38 2.01 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 11 Si 0.87 22.54 27.57 -169.99 -4.69 17.85 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.26 -6.60 6.40 56.52 0.36 -6.24 16 15 C 0.05 0.96 4.58 -3.83 -0.02 0.94 16 16 C -0.08 -1.12 5.00 -27.88 -0.14 -1.26 16 17 C -0.11 -1.34 5.14 -104.55 -0.54 -1.88 16 18 C -0.09 -0.96 9.67 -39.59 -0.38 -1.34 16 19 C -0.13 -1.17 10.05 -39.57 -0.40 -1.57 16 20 C -0.10 -0.90 10.04 -39.59 -0.40 -1.30 16 21 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 22 C 0.10 1.34 7.24 -39.42 -0.29 1.05 16 23 F -0.13 -2.01 16.66 2.25 0.04 -1.97 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.65 5.79 -51.92 -0.30 0.35 16 29 H 0.10 2.27 6.33 -51.93 -0.33 1.94 16 30 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 31 H 0.03 0.78 3.99 -51.93 -0.21 0.58 16 32 H 0.01 0.33 7.72 -51.93 -0.40 -0.07 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.03 0.53 5.71 -51.93 -0.30 0.23 16 35 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 36 H 0.08 1.30 7.94 -51.93 -0.41 0.88 16 37 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 38 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -32.91 331.70 -7.92 -40.83 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.99 Total: -1.34 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.67 Total: -13.06 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.35 Total: -39.94 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.27 Total: -7.38 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.69 Total: 17.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.91 -7.92 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137589217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.012 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds