Wall clock time and date at job start Tue Mar 31 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46997 * 2 1 4 4 C 1.52999 * 109.46997 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47053 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.39926 * 120.00156 * 179.97438 * 7 6 5 9 9 C 1.38720 * 120.07846 * 359.72887 * 8 7 6 10 10 C 1.38214 * 120.01446 * 179.69905 * 9 8 7 11 11 C 1.38526 * 120.17700 * 0.59332 * 10 9 8 12 12 F 1.35105 * 119.91933 * 179.70124 * 11 10 9 13 13 C 1.38352 * 120.15741 * 359.67812 * 11 10 9 14 14 C 1.38714 * 119.98510 * 0.02562 * 13 11 10 15 15 O 1.35798 * 120.09250 * 180.02562 * 14 13 11 16 16 C 1.34799 * 116.99375 * 354.40483 * 15 14 13 17 17 H 1.07997 * 120.00528 * 5.05792 * 16 15 14 18 18 C 1.38632 * 119.99593 * 185.06092 * 16 15 14 19 19 N 1.31570 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46938 * 89.99672 * 20 18 16 22 22 H 1.48490 * 109.47182 * 210.00204 * 20 18 16 23 23 H 1.48499 * 109.46941 * 330.00179 * 20 18 16 24 24 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47064 * 300.00103 * 1 2 3 26 26 H 1.09002 * 109.46802 * 59.99802 * 1 2 3 27 27 H 1.09003 * 109.47483 * 240.00369 * 2 1 3 28 28 H 1.08996 * 109.47479 * 120.00201 * 2 1 3 29 29 H 1.09003 * 109.46702 * 59.99891 * 3 2 1 30 30 H 1.08996 * 109.47170 * 300.00390 * 3 2 1 31 31 H 1.08995 * 109.47064 * 59.99897 * 4 3 2 32 32 H 1.09002 * 109.46802 * 300.00198 * 4 3 2 33 33 H 1.09003 * 109.46956 * 59.99702 * 5 4 3 34 34 H 1.08996 * 109.46861 * 300.00235 * 5 4 3 35 35 H 1.09002 * 109.46802 * 299.99854 * 6 5 4 36 36 H 1.08995 * 109.47064 * 59.99553 * 6 5 4 37 37 H 0.97005 * 119.99957 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.98694 * 359.96630 * 9 8 7 39 39 H 1.08005 * 119.90584 * 180.27125 * 10 9 8 40 40 H 1.08004 * 120.00550 * 180.02562 * 13 11 10 41 41 H 0.97010 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 7 6.0983 4.2663 0.0025 8 6 7.4739 4.5221 0.0033 9 6 8.3769 3.4690 0.0086 10 6 9.7355 3.7231 0.0030 11 6 10.1998 5.0282 0.0046 12 9 11.5289 5.2706 0.0053 13 6 9.3057 6.0840 0.0050 14 6 7.9408 5.8366 0.0044 15 8 7.0612 6.8713 0.0043 16 6 7.5757 8.1117 0.1219 17 1 8.6462 8.2539 0.1285 18 6 6.7305 9.2047 0.2345 19 7 5.4263 9.0315 0.2260 20 14 7.4433 10.9237 0.3982 21 1 7.6232 11.5156 -0.9518 22 1 6.5162 11.7706 1.1906 23 1 8.7575 10.8511 1.0859 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7162 3.3987 0.8913 34 1 3.7170 3.3991 -0.8887 35 1 5.9732 2.3709 0.8911 36 1 5.9733 2.3716 -0.8888 37 1 5.4679 5.0036 0.0028 38 1 8.0181 2.4503 0.0126 39 1 10.4369 2.9018 0.0027 40 1 9.6704 7.1006 0.0059 41 1 4.8348 9.7964 0.3045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150776381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:42 Heat of formation + Delta-G solvation = -77.204043 kcal Electronic energy + Delta-G solvation = -21161.842503 eV Core-core repulsion = 17762.793081 eV Total energy + Delta-G solvation = -3399.049422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.03243 -39.19114 -37.10818 -36.30252 -34.82974 -32.39537 -32.17803 -29.25886 -28.87458 -26.61036 -25.38189 -23.81772 -22.03384 -21.26892 -20.92045 -20.73069 -18.16533 -17.50741 -16.11307 -16.08237 -15.76239 -15.12881 -14.92912 -14.72967 -14.39083 -14.17255 -13.90748 -13.66189 -13.50692 -13.19490 -13.13690 -13.03413 -12.26732 -12.04500 -11.92182 -11.90057 -11.58512 -11.38016 -11.27895 -11.03291 -10.98281 -10.74464 -10.61844 -10.55266 -10.52916 -10.38318 -9.57073 -9.20540 -8.85109 -7.72896 -6.48492 -6.41942 -4.03084 2.13994 2.25425 3.12438 3.14089 3.18610 3.92585 4.01886 4.48575 4.64790 4.74138 4.88111 4.98561 5.03959 5.09504 5.17422 5.28538 5.30672 5.39406 5.56785 5.59725 5.64947 5.69506 5.72133 5.81846 5.85524 5.88471 5.93716 6.04443 6.13330 6.14040 6.30519 6.30613 6.47859 6.60893 6.83079 7.04162 7.11645 7.26160 7.63908 7.93303 8.06657 8.44418 8.98607 9.64984 10.69829 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003906 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.164502 B = 7166.798187 C = 9304.258767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.132 4.132 6 C 0.133 3.867 7 N -0.747 5.747 8 C 0.154 3.846 9 C -0.147 4.147 10 C -0.195 4.195 11 C 0.085 3.915 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.120 3.880 15 O -0.177 6.177 16 C -0.386 4.386 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.408 0.592 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -13.814 -0.249 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.170 4.170 6 C 0.008 3.992 7 N -0.381 5.381 8 C 0.052 3.948 9 C -0.171 4.171 10 C -0.215 4.215 11 C 0.064 3.936 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.065 3.935 15 O -0.081 6.081 16 C -0.463 4.463 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.244 0.756 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.122 -13.823 -0.247 14.744 hybrid contribution 0.468 1.223 0.084 1.312 sum -4.654 -12.600 -0.162 13.433 Atomic orbital electron populations 1.21785 0.96074 1.01379 1.01864 1.21540 0.95714 0.97126 1.01888 1.21630 0.95415 0.96542 1.02300 1.21501 0.95321 0.96305 1.02136 1.21768 0.94874 0.97233 1.03098 1.21153 0.93422 0.84435 1.00173 1.44372 1.03300 1.06496 1.83935 1.17119 0.84499 0.90298 1.02861 1.19930 0.91512 0.96711 1.08954 1.20295 0.95508 0.94292 1.11411 1.17226 0.76388 0.93667 1.06352 1.91377 1.32243 1.95447 1.94624 1.20786 0.92251 0.99279 1.13906 1.18607 0.88731 0.87723 0.98416 1.83889 1.31635 1.13109 1.79456 1.21293 0.93294 0.79844 1.51829 0.89111 1.25237 0.95172 0.99414 0.96578 1.70021 1.02038 1.31616 1.46259 0.85720 0.78750 0.80377 0.78691 1.19893 1.20282 1.19164 0.92978 0.92760 0.92770 0.92131 0.92127 0.91920 0.91921 0.91880 0.91880 0.91257 0.91285 0.93186 0.93171 0.75567 0.86191 0.86567 0.84469 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 4 C -0.11 -1.08 5.21 -26.73 -0.14 -1.22 16 5 C -0.13 -1.56 5.33 -26.73 -0.14 -1.70 16 6 C 0.13 1.84 4.92 -4.04 -0.02 1.82 16 7 N -0.75 -13.72 5.73 -58.46 -0.34 -14.05 16 8 C 0.15 3.17 6.67 -83.52 -0.56 2.61 16 9 C -0.15 -2.66 9.31 -39.41 -0.37 -3.03 16 10 C -0.19 -3.59 10.02 -39.48 -0.40 -3.98 16 11 C 0.08 1.75 7.29 -39.43 -0.29 1.46 16 12 F -0.16 -3.17 17.26 2.25 0.04 -3.13 16 13 C -0.24 -5.49 9.14 -39.36 -0.36 -5.85 16 14 C 0.12 2.88 6.66 -38.94 -0.26 2.62 16 15 O -0.18 -4.82 9.00 -0.01 0.00 -4.82 16 16 C -0.39 -10.63 9.49 30.88 0.29 -10.33 16 17 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.51 13.67 55.48 0.76 -23.75 16 20 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 36 H 0.05 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.41 8.18 7.84 -40.82 -0.32 7.86 16 38 H 0.12 1.81 6.73 -52.48 -0.35 1.46 16 39 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.14 3.17 5.64 -52.48 -0.30 2.87 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -28.86 344.39 -7.91 -36.77 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.28 Total: 8.10 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.26 Total: -19.74 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.42 Total: -37.81 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.86 -7.91 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150776381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.436 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds