Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46997 * 2 1 4 4 C 1.52999 * 109.46997 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47053 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.39926 * 120.00156 * 179.97438 * 7 6 5 9 9 C 1.38720 * 120.07846 * 359.72887 * 8 7 6 10 10 C 1.38214 * 120.01446 * 179.69905 * 9 8 7 11 11 C 1.38526 * 120.17700 * 0.59332 * 10 9 8 12 12 F 1.35105 * 119.91933 * 179.70124 * 11 10 9 13 13 C 1.38352 * 120.15741 * 359.67812 * 11 10 9 14 14 C 1.38714 * 119.98510 * 0.02562 * 13 11 10 15 15 O 1.35798 * 120.09250 * 180.02562 * 14 13 11 16 16 C 1.34799 * 116.99375 * 354.40483 * 15 14 13 17 17 H 1.07997 * 120.00528 * 5.05792 * 16 15 14 18 18 C 1.38632 * 119.99593 * 185.06092 * 16 15 14 19 19 N 1.31570 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46938 * 89.99672 * 20 18 16 22 22 H 1.48490 * 109.47182 * 210.00204 * 20 18 16 23 23 H 1.48499 * 109.46941 * 330.00179 * 20 18 16 24 24 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47064 * 300.00103 * 1 2 3 26 26 H 1.09002 * 109.46802 * 59.99802 * 1 2 3 27 27 H 1.09003 * 109.47483 * 240.00369 * 2 1 3 28 28 H 1.08996 * 109.47479 * 120.00201 * 2 1 3 29 29 H 1.09003 * 109.46702 * 59.99891 * 3 2 1 30 30 H 1.08996 * 109.47170 * 300.00390 * 3 2 1 31 31 H 1.08995 * 109.47064 * 59.99897 * 4 3 2 32 32 H 1.09002 * 109.46802 * 300.00198 * 4 3 2 33 33 H 1.09003 * 109.46956 * 59.99702 * 5 4 3 34 34 H 1.08996 * 109.46861 * 300.00235 * 5 4 3 35 35 H 1.09002 * 109.46802 * 299.99854 * 6 5 4 36 36 H 1.08995 * 109.47064 * 59.99553 * 6 5 4 37 37 H 0.97005 * 119.99957 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.98694 * 359.96630 * 9 8 7 39 39 H 1.08005 * 119.90584 * 180.27125 * 10 9 8 40 40 H 1.08004 * 120.00550 * 180.02562 * 13 11 10 41 41 H 0.97010 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 7 6.0983 4.2663 0.0025 8 6 7.4739 4.5221 0.0033 9 6 8.3769 3.4690 0.0086 10 6 9.7355 3.7231 0.0030 11 6 10.1998 5.0282 0.0046 12 9 11.5289 5.2706 0.0053 13 6 9.3057 6.0840 0.0050 14 6 7.9408 5.8366 0.0044 15 8 7.0612 6.8713 0.0043 16 6 7.5757 8.1117 0.1219 17 1 8.6462 8.2539 0.1285 18 6 6.7305 9.2047 0.2345 19 7 5.4263 9.0315 0.2260 20 14 7.4433 10.9237 0.3982 21 1 7.6232 11.5156 -0.9518 22 1 6.5162 11.7706 1.1906 23 1 8.7575 10.8511 1.0859 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7162 3.3987 0.8913 34 1 3.7170 3.3991 -0.8887 35 1 5.9732 2.3709 0.8911 36 1 5.9733 2.3716 -0.8888 37 1 5.4679 5.0036 0.0028 38 1 8.0181 2.4503 0.0126 39 1 10.4369 2.9018 0.0027 40 1 9.6704 7.1006 0.0059 41 1 4.8348 9.7964 0.3045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150776381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = -92.482328 kcal Electronic energy + Delta-G solvation = -21162.505020 eV Core-core repulsion = 17762.793081 eV Total energy + Delta-G solvation = -3399.711938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.63683 -40.88437 -38.51378 -37.52401 -36.00449 -34.27507 -33.28391 -30.92820 -30.07496 -27.87300 -27.27936 -24.92136 -23.44243 -22.58307 -21.95763 -21.75310 -20.00281 -19.24710 -17.63588 -17.31121 -16.93518 -16.92634 -16.45557 -15.97453 -15.76369 -15.61617 -15.32689 -15.15009 -14.97990 -14.53402 -14.11768 -14.02088 -13.77170 -13.56088 -13.14007 -13.08876 -13.01229 -12.70762 -12.38683 -12.29654 -12.18835 -12.01871 -11.77304 -11.66824 -11.55325 -11.34458 -11.33024 -10.80114 -10.66632 -9.43462 -8.47064 -8.01851 -6.09402 0.48968 0.61865 1.34999 1.42378 1.50715 2.16144 2.62891 2.77644 3.10786 3.34224 3.64550 3.81190 4.00902 4.02272 4.13101 4.24618 4.25548 4.35023 4.50764 4.53039 4.60204 4.69025 4.78450 4.85984 4.94117 4.95851 5.02955 5.09214 5.10850 5.15332 5.24994 5.27010 5.33889 5.39587 5.44158 5.47144 5.50166 5.54901 5.96864 6.05389 6.57724 6.83835 6.98745 7.75543 8.74899 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003906 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.164502 B = 7166.798187 C = 9304.258767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.129 3.871 7 N -0.751 5.751 8 C 0.151 3.849 9 C -0.137 4.137 10 C -0.164 4.164 11 C 0.063 3.937 12 F -0.155 7.155 13 C -0.247 4.247 14 C 0.078 3.922 15 O -0.216 6.216 16 C -0.410 4.410 17 H 0.093 0.907 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.011 2.989 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.260 1.260 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -16.297 -0.203 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.144 4.144 5 C -0.164 4.164 6 C 0.006 3.994 7 N -0.382 5.382 8 C 0.048 3.952 9 C -0.160 4.160 10 C -0.183 4.183 11 C 0.042 3.958 12 F -0.134 7.134 13 C -0.268 4.268 14 C 0.025 3.975 15 O -0.123 6.123 16 C -0.486 4.486 17 H 0.110 0.890 18 C -0.213 4.213 19 N -0.550 5.550 20 Si 0.831 3.169 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.184 1.184 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.230 0.770 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.214 -16.375 -0.204 16.910 hybrid contribution 0.280 1.708 0.057 1.731 sum -3.934 -14.668 -0.148 15.187 Atomic orbital electron populations 1.21798 0.95841 1.01925 1.01685 1.21523 0.95950 0.96203 1.02361 1.21623 0.95168 0.97365 1.01772 1.21451 0.95489 0.94439 1.03068 1.21724 0.93728 0.98864 1.02109 1.21444 0.94511 0.81991 1.01431 1.44673 1.02354 1.08098 1.83084 1.17475 0.86075 0.89728 1.01891 1.20405 0.90915 0.97805 1.06900 1.20809 0.96375 0.94189 1.06950 1.17330 0.76310 0.94172 1.07978 1.91380 1.31791 1.95532 1.94727 1.20848 0.92644 0.99511 1.13788 1.19096 0.89066 0.88539 1.00756 1.83857 1.32812 1.13528 1.82096 1.21666 0.93691 0.80785 1.52461 0.88994 1.26366 0.95513 1.03421 0.96045 1.70142 1.03437 1.32883 1.48543 0.84691 0.78227 0.74935 0.79063 1.18957 1.19379 1.18358 0.92076 0.92984 0.92969 0.91614 0.91642 0.92537 0.92485 0.90860 0.90917 0.92378 0.92298 0.91684 0.91581 0.77049 0.82011 0.82466 0.86054 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.69 5.93 30.60 0.18 -1.51 16 3 C -0.12 -2.00 5.21 30.60 0.16 -1.84 16 4 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 5 C -0.13 -2.84 5.33 30.59 0.16 -2.68 16 6 C 0.13 3.27 4.92 86.38 0.42 3.70 16 7 N -0.75 -27.27 5.73 -338.87 -1.94 -29.22 16 8 C 0.15 6.11 6.67 38.27 0.26 6.37 16 9 C -0.14 -4.44 9.31 22.38 0.21 -4.23 16 10 C -0.16 -5.38 10.02 22.33 0.22 -5.15 16 11 C 0.06 2.52 7.29 22.37 0.16 2.68 16 12 F -0.16 -5.98 17.26 44.97 0.78 -5.21 16 13 C -0.25 -11.48 9.14 22.41 0.20 -11.27 16 14 C 0.08 3.84 6.66 22.69 0.15 3.99 16 15 O -0.22 -12.45 9.00 -22.95 -0.21 -12.65 16 16 C -0.41 -23.69 9.49 67.91 0.64 -23.05 16 17 H 0.09 5.06 5.21 -2.91 -0.02 5.04 16 18 C -0.02 -0.85 5.49 84.83 0.47 -0.39 16 19 N -0.91 -54.12 13.67 21.61 0.30 -53.83 16 20 Si 1.01 43.11 29.55 68.60 2.03 45.14 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.49 7.94 -2.39 -0.02 1.47 16 36 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 37 H 0.40 16.45 7.84 -92.70 -0.73 15.73 16 38 H 0.16 3.94 6.73 -2.91 -0.02 3.92 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.12 5.89 5.64 -2.91 -0.02 5.87 16 41 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -65.50 344.39 5.37 -60.13 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.30 Total: 31.97 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 4.12 Total: -36.34 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.65 Total: -83.04 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.21 Total: -12.65 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.78 Total: -5.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.50 5.37 -60.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150776381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.351 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds