Wall clock time and date at job start Tue Mar 31 2020 05:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00192 * 2 1 4 4 C 1.38769 * 120.00442 * 359.97438 * 3 2 1 5 5 C 1.38399 * 120.06991 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.96705 * 180.02562 * 5 4 3 7 7 C 1.38385 * 120.07699 * 0.02562 * 5 4 3 8 8 C 1.38891 * 120.01048 * 359.97438 * 7 5 4 9 9 N 1.39664 * 120.03420 * 179.97438 * 8 7 5 10 10 C 1.46497 * 119.99846 * 0.02562 * 9 8 7 11 11 C 1.53003 * 109.46691 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46943 * 299.99703 * 11 10 9 13 13 C 1.52997 * 109.47221 * 60.00109 * 11 10 9 14 14 C 1.52998 * 109.46876 * 180.02562 * 11 10 9 15 15 C 1.50708 * 109.47275 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99666 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00170 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46725 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46749 * 120.00037 * 19 17 15 22 22 H 1.48488 * 109.47142 * 240.00129 * 19 17 15 23 23 C 1.38591 * 120.00489 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47242 * 59.99727 * 1 2 3 25 25 H 1.08993 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46656 * 300.00125 * 1 2 3 27 27 H 1.07999 * 119.96849 * 0.04469 * 4 3 2 28 28 H 1.08004 * 119.99809 * 179.72668 * 7 5 4 29 29 H 0.97002 * 119.99538 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47065 * 299.99330 * 10 9 8 31 31 H 1.09000 * 109.47410 * 60.00122 * 10 9 8 32 32 H 1.08995 * 109.47254 * 60.00653 * 12 11 10 33 33 H 1.09004 * 109.46951 * 179.97438 * 12 11 10 34 34 H 1.08992 * 109.47276 * 299.99935 * 12 11 10 35 35 H 1.09002 * 109.47185 * 60.00071 * 13 11 10 36 36 H 1.09004 * 109.47270 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46977 * 299.99909 * 13 11 10 38 38 H 1.08994 * 109.47493 * 300.00088 * 14 11 10 39 39 H 1.09000 * 109.47342 * 60.00255 * 14 11 10 40 40 H 0.97000 * 120.00304 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.03897 * 359.95653 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3747 -0.0005 5 6 1.9173 3.6086 -0.0011 6 9 1.1796 4.7404 -0.0011 7 6 3.2991 3.6844 -0.0016 8 6 4.0586 2.5215 -0.0011 9 7 5.4532 2.5975 -0.0022 10 6 6.1156 3.9041 -0.0033 11 6 7.6328 3.7067 -0.0037 12 6 8.0459 2.9266 1.2460 13 6 8.0450 2.9248 -1.2525 14 6 8.3246 5.0713 -0.0042 15 6 9.8191 4.8769 -0.0040 16 1 10.2339 3.8797 -0.0039 17 6 10.6568 5.9720 -0.0049 18 7 10.1516 7.1863 -0.0055 19 14 12.5092 5.7311 -0.0053 20 1 12.8193 4.2788 -0.0052 21 1 13.0899 6.3607 -1.2184 22 1 13.0907 6.3621 1.2065 23 6 3.4300 1.2834 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2119 2.3177 -0.0002 28 1 3.7870 4.6479 -0.0065 29 1 5.9831 1.7850 -0.0022 30 1 5.8210 4.4600 -0.8934 31 1 5.8223 4.4610 0.8866 32 1 7.5531 1.9544 1.2469 33 1 9.1267 2.7855 1.2455 34 1 7.7522 3.4836 2.1356 35 1 7.7508 3.4807 -2.1428 36 1 9.1259 2.7838 -1.2526 37 1 7.5521 1.9526 -1.2517 38 1 8.0304 5.6275 -0.8942 39 1 8.0309 5.6280 0.8857 40 1 10.7409 7.9568 -0.0058 41 1 4.0189 0.3781 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152000438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:35 Heat of formation + Delta-G solvation = -75.153704 kcal Electronic energy + Delta-G solvation = -21682.212431 eV Core-core repulsion = 18283.251919 eV Total energy + Delta-G solvation = -3398.960513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.87678 -40.16121 -38.50931 -36.90187 -33.95765 -32.25654 -30.42640 -29.00087 -27.57238 -26.99883 -26.53481 -25.69627 -23.04658 -22.60161 -21.37874 -18.67465 -18.18534 -16.94053 -16.43773 -16.23276 -16.03629 -15.85045 -15.38090 -15.36752 -14.59644 -14.53630 -14.40365 -14.29023 -13.13764 -12.99070 -12.96504 -12.67113 -12.28706 -12.26917 -12.09183 -11.56163 -11.47331 -11.41718 -11.07696 -10.99694 -10.85668 -10.67347 -10.42916 -10.26668 -9.96997 -9.64464 -9.25368 -8.96251 -8.39801 -8.34031 -7.43594 -6.03846 -4.04972 1.28077 1.49375 2.96294 3.27999 3.36338 3.38719 3.67446 3.70108 4.29728 4.42774 4.83448 4.93116 4.98489 5.12682 5.13807 5.25280 5.27132 5.32030 5.38454 5.54331 5.71589 5.83497 6.09196 6.13003 6.14419 6.15594 6.21079 6.25864 6.33761 6.54391 6.60478 6.62896 6.99899 7.03819 7.06285 7.23306 7.40866 7.58548 7.70621 7.83220 7.94772 8.36878 8.99897 9.58604 11.07683 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.003212 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.070813 B = 8716.361279 C = 9355.764695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.198 3.802 4 C -0.313 4.313 5 C 0.183 3.817 6 F -0.139 7.139 7 C -0.268 4.268 8 C 0.288 3.712 9 N -0.725 5.725 10 C 0.127 3.873 11 C -0.071 4.071 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.248 4.248 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.403 0.597 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 -12.177 0.008 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.151 3.849 4 C -0.334 4.334 5 C 0.163 3.837 6 F -0.117 7.117 7 C -0.292 4.292 8 C 0.179 3.821 9 N -0.351 5.351 10 C 0.004 3.996 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.002 4.002 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.272 4.272 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.240 0.760 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.780 -11.939 0.007 20.594 hybrid contribution 0.826 0.151 -0.001 0.840 sum -15.954 -11.788 0.006 19.836 Atomic orbital electron populations 1.23065 0.78329 1.03776 1.01612 1.86069 1.21461 1.26782 1.88363 1.18201 0.91231 0.83323 0.92134 1.20725 1.00428 0.91055 1.21227 1.16981 0.88462 0.81222 0.97030 1.91486 1.77087 1.49699 1.93476 1.20489 0.91776 0.99134 1.17830 1.17138 0.84394 0.91796 0.88812 1.45116 1.01675 1.09641 1.78692 1.21725 0.93625 0.83322 1.00959 1.20874 0.90903 1.00148 0.95200 1.21755 1.02145 0.97353 0.97177 1.21755 1.02144 0.97349 0.97183 1.19101 0.94916 0.88746 0.97406 1.21216 0.91056 0.92457 1.50173 0.92200 1.25010 0.98635 0.95341 0.95510 1.69966 1.34836 0.97673 1.50958 0.86591 0.85999 0.78186 0.77558 1.19785 1.21110 1.21105 1.19666 0.91576 0.96948 1.18976 0.92509 0.88308 0.92517 0.85009 0.84485 0.76028 0.92148 0.92146 0.95138 0.91461 0.93373 0.93375 0.91464 0.95133 0.96371 0.96369 0.93070 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.50 10.49 -19.41 -0.20 -3.70 16 3 C 0.20 2.47 6.68 -39.25 -0.26 2.20 16 4 C -0.31 -3.82 9.01 -39.33 -0.35 -4.18 16 5 C 0.18 2.51 7.29 -39.47 -0.29 2.22 16 6 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 7 C -0.27 -3.83 9.29 -39.29 -0.36 -4.19 16 8 C 0.29 3.98 6.65 -83.82 -0.56 3.42 16 9 N -0.73 -10.05 5.13 -58.66 -0.30 -10.35 16 10 C 0.13 2.04 3.80 -4.04 -0.02 2.02 16 11 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 14 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 16 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.25 -3.19 9.83 -39.22 -0.39 -3.58 16 24 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.13 1.33 6.29 -52.49 -0.33 1.00 16 28 H 0.14 1.97 6.72 -52.48 -0.35 1.61 16 29 H 0.40 5.15 6.17 -40.82 -0.25 4.90 16 30 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 31 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 32 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -28.73 333.29 -6.85 -35.58 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.93 Total: 2.16 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.19 Total: -17.50 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.44 Total: -35.66 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.73 -6.85 -35.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152000438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.571 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds