Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36058 * 116.99896 * 2 1 4 4 C 1.38636 * 119.98494 * 359.97438 * 3 2 1 5 5 C 1.38155 * 120.03948 * 180.02562 * 4 3 2 6 6 C 1.38863 * 120.01677 * 0.02562 * 5 4 3 7 7 N 1.39936 * 120.00780 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99906 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47233 * 299.99500 * 9 8 7 11 11 C 1.52996 * 109.47328 * 59.99969 * 9 8 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 9 8 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 9 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47258 * 119.99423 * 17 15 13 20 20 H 1.48493 * 109.47346 * 240.00028 * 17 15 13 21 21 C 1.38841 * 119.97960 * 0.26783 * 6 5 4 22 22 C 1.38293 * 119.95554 * 359.43306 * 21 6 5 23 23 F 1.35101 * 120.00544 * 180.26835 * 22 21 6 24 24 H 1.08994 * 109.47731 * 300.00274 * 1 2 3 25 25 H 1.09005 * 109.46737 * 60.00638 * 1 2 3 26 26 H 1.08998 * 109.46734 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.98190 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.98814 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99673 * 359.97438 * 7 6 5 30 30 H 1.09002 * 109.47391 * 59.99482 * 8 7 6 31 31 H 1.09001 * 109.46813 * 299.99538 * 8 7 6 32 32 H 1.09000 * 109.46986 * 60.00203 * 10 9 8 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 1.08992 * 109.47554 * 59.99639 * 11 9 8 36 36 H 1.09004 * 109.47108 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.46870 * 299.99783 * 11 9 8 38 38 H 1.09001 * 109.47109 * 299.99380 * 12 9 8 39 39 H 1.09002 * 109.47508 * 59.99571 * 12 9 8 40 40 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 41 41 H 1.08010 * 120.01944 * 179.70617 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9173 3.6064 -0.0011 6 6 3.3039 3.6808 -0.0016 7 7 3.9378 4.9283 -0.0016 8 6 5.4007 5.0066 -0.0016 9 6 5.8328 6.4743 -0.0023 10 6 5.2851 7.1667 -1.2519 11 6 5.2850 7.1679 1.2466 12 6 7.3606 6.5561 -0.0029 13 6 7.7863 8.0017 -0.0042 14 1 7.0416 8.7840 -0.0049 15 6 9.1265 8.3258 -0.0044 16 7 10.0333 7.3733 -0.0030 17 14 9.6542 10.1177 -0.0053 18 1 8.4508 10.9880 -0.0062 19 1 10.4654 10.3954 1.2071 20 1 10.4654 10.3943 -1.2179 21 6 4.0612 2.5171 -0.0072 22 6 3.4335 1.2848 -0.0004 23 9 4.1694 0.1518 -0.0004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2128 2.3176 -0.0005 28 1 1.3280 4.5114 -0.0019 29 1 3.4086 5.7412 -0.0016 30 1 5.7910 4.5129 -0.8915 31 1 5.7909 4.5130 0.8884 32 1 4.1967 7.1084 -1.2519 33 1 5.5933 8.2122 -1.2527 34 1 5.6754 6.6725 -2.1416 35 1 5.6751 6.6747 2.1368 36 1 5.5932 8.2134 1.2463 37 1 4.1965 7.1096 1.2466 38 1 7.7513 6.0628 0.8871 39 1 7.7506 6.0621 -0.8928 40 1 10.9761 7.6013 -0.0028 41 1 5.1397 2.5742 -0.0125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155962285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = -71.737066 kcal Electronic energy + Delta-G solvation = -21707.388653 eV Core-core repulsion = 18308.576296 eV Total energy + Delta-G solvation = -3398.812356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.69557 -40.00509 -38.47198 -36.95312 -33.84795 -32.20863 -30.72283 -28.94718 -27.49866 -26.91836 -26.53423 -25.51727 -23.11877 -22.56629 -21.40320 -18.54730 -18.18781 -17.37595 -16.74607 -16.28696 -16.11703 -15.45026 -15.04006 -14.75832 -14.63940 -14.47261 -14.37472 -14.22260 -13.23687 -12.95983 -12.94051 -12.66678 -12.35860 -12.20047 -12.09209 -11.84290 -11.51864 -11.15763 -11.09792 -11.03181 -10.85710 -10.67410 -10.42199 -10.26398 -9.93212 -9.38278 -9.24375 -8.95759 -8.84046 -8.39608 -7.08448 -6.03680 -4.04786 1.14830 1.50166 3.16537 3.27847 3.36147 3.38319 3.60700 3.67528 4.31971 4.42802 4.66783 4.85367 4.96862 5.09222 5.20254 5.26939 5.32157 5.38495 5.54570 5.55662 5.71333 5.74864 5.96066 6.09747 6.13626 6.14427 6.19642 6.23319 6.34317 6.56710 6.60384 6.62498 6.99911 7.04065 7.06662 7.25696 7.47299 7.59035 7.71276 7.89092 7.95023 8.37212 9.00116 9.58707 11.07852 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038860 B = 0.003115 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.368924 B = 8986.185326 C = 9504.881798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.021 3.979 4 C -0.129 4.129 5 C -0.177 4.177 6 C 0.224 3.776 7 N -0.733 5.733 8 C 0.128 3.872 9 C -0.070 4.070 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.035 3.965 13 C -0.511 4.511 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.202 4.202 22 C 0.122 3.878 23 F -0.134 7.134 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.401 0.599 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.844 -9.469 0.004 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.026 4.026 4 C -0.148 4.148 5 C -0.200 4.200 6 C 0.118 3.882 7 N -0.362 5.362 8 C 0.005 3.995 9 C -0.071 4.071 10 C -0.184 4.184 11 C -0.183 4.183 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.226 4.226 22 C 0.102 3.898 23 F -0.113 7.113 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.237 0.763 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.313 -9.718 0.003 20.732 hybrid contribution 0.170 1.212 0.000 1.224 sum -18.142 -8.506 0.004 20.037 Atomic orbital electron populations 1.22984 0.78860 1.03610 1.01039 1.86102 1.20861 1.26000 1.90182 1.18628 0.90531 0.85408 1.08056 1.20776 0.99552 0.90977 1.03501 1.20417 0.92386 0.97654 1.09528 1.17525 0.90997 0.86142 0.93529 1.45046 1.06855 1.03934 1.80391 1.21663 0.78302 0.98875 1.00679 1.20856 1.00254 0.90828 0.95120 1.21747 0.97382 1.02011 0.97212 1.21745 0.97385 1.02005 0.97216 1.19103 0.86247 0.97463 0.97398 1.21214 0.91436 0.92074 1.50164 0.92228 1.25015 0.96965 0.97012 0.95527 1.69972 1.00743 1.31744 1.50951 0.86592 0.78659 0.85518 0.77561 1.19809 1.21106 1.21112 1.20464 1.01024 0.89227 1.11910 1.16643 0.85718 0.82317 1.05150 1.91482 1.76792 1.49018 1.93977 0.92916 0.92909 0.88532 0.84937 0.85491 0.76273 0.92419 0.92412 0.95183 0.91525 0.93421 0.93419 0.91528 0.95177 0.96382 0.96386 0.93073 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.97 10.36 -19.92 -0.21 -4.18 16 3 C 0.02 0.27 6.69 -39.20 -0.26 0.01 16 4 C -0.13 -1.40 9.03 -39.46 -0.36 -1.76 16 5 C -0.18 -2.00 9.89 -39.38 -0.39 -2.39 16 6 C 0.22 2.98 6.65 -83.70 -0.56 2.43 16 7 N -0.73 -9.93 5.14 -58.59 -0.30 -10.23 16 8 C 0.13 2.05 3.80 -4.04 -0.02 2.04 16 9 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 10 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 11 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 12 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 13 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 14 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.20 -2.88 9.29 -39.34 -0.37 -3.25 16 22 C 0.12 1.79 7.30 -39.32 -0.29 1.50 16 23 F -0.13 -2.10 17.11 2.25 0.04 -2.06 16 24 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.40 4.96 6.18 -40.82 -0.25 4.70 16 30 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 31 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.07 1.25 6.61 -51.93 -0.34 0.90 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 37 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.14 2.03 6.73 -52.48 -0.35 1.68 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -29.44 333.14 -6.86 -36.30 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.93 Total: 1.26 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.20 Total: -16.76 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.43 Total: -35.57 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.21 Total: -4.18 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.44 -6.86 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155962285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds