Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36058 * 116.99896 * 2 1 4 4 C 1.38636 * 119.98494 * 359.97438 * 3 2 1 5 5 C 1.38155 * 120.03948 * 180.02562 * 4 3 2 6 6 C 1.38863 * 120.01677 * 0.02562 * 5 4 3 7 7 N 1.39936 * 120.00780 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99906 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47233 * 299.99500 * 9 8 7 11 11 C 1.52996 * 109.47328 * 59.99969 * 9 8 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 9 8 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 9 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47258 * 119.99423 * 17 15 13 20 20 H 1.48493 * 109.47346 * 240.00028 * 17 15 13 21 21 C 1.38841 * 119.97960 * 0.26783 * 6 5 4 22 22 C 1.38293 * 119.95554 * 359.43306 * 21 6 5 23 23 F 1.35101 * 120.00544 * 180.26835 * 22 21 6 24 24 H 1.08994 * 109.47731 * 300.00274 * 1 2 3 25 25 H 1.09005 * 109.46737 * 60.00638 * 1 2 3 26 26 H 1.08998 * 109.46734 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.98190 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.98814 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99673 * 359.97438 * 7 6 5 30 30 H 1.09002 * 109.47391 * 59.99482 * 8 7 6 31 31 H 1.09001 * 109.46813 * 299.99538 * 8 7 6 32 32 H 1.09000 * 109.46986 * 60.00203 * 10 9 8 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 1.08992 * 109.47554 * 59.99639 * 11 9 8 36 36 H 1.09004 * 109.47108 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.46870 * 299.99783 * 11 9 8 38 38 H 1.09001 * 109.47109 * 299.99380 * 12 9 8 39 39 H 1.09002 * 109.47508 * 59.99571 * 12 9 8 40 40 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 41 41 H 1.08010 * 120.01944 * 179.70617 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9173 3.6064 -0.0011 6 6 3.3039 3.6808 -0.0016 7 7 3.9378 4.9283 -0.0016 8 6 5.4007 5.0066 -0.0016 9 6 5.8328 6.4743 -0.0023 10 6 5.2851 7.1667 -1.2519 11 6 5.2850 7.1679 1.2466 12 6 7.3606 6.5561 -0.0029 13 6 7.7863 8.0017 -0.0042 14 1 7.0416 8.7840 -0.0049 15 6 9.1265 8.3258 -0.0044 16 7 10.0333 7.3733 -0.0030 17 14 9.6542 10.1177 -0.0053 18 1 8.4508 10.9880 -0.0062 19 1 10.4654 10.3954 1.2071 20 1 10.4654 10.3943 -1.2179 21 6 4.0612 2.5171 -0.0072 22 6 3.4335 1.2848 -0.0004 23 9 4.1694 0.1518 -0.0004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2128 2.3176 -0.0005 28 1 1.3280 4.5114 -0.0019 29 1 3.4086 5.7412 -0.0016 30 1 5.7910 4.5129 -0.8915 31 1 5.7909 4.5130 0.8884 32 1 4.1967 7.1084 -1.2519 33 1 5.5933 8.2122 -1.2527 34 1 5.6754 6.6725 -2.1416 35 1 5.6751 6.6747 2.1368 36 1 5.5932 8.2134 1.2463 37 1 4.1965 7.1096 1.2466 38 1 7.7513 6.0628 0.8871 39 1 7.7506 6.0621 -0.8928 40 1 10.9761 7.6013 -0.0028 41 1 5.1397 2.5742 -0.0125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155962285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = -88.573307 kcal Electronic energy + Delta-G solvation = -21708.118727 eV Core-core repulsion = 18308.576296 eV Total energy + Delta-G solvation = -3399.542431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.82183 -40.95405 -39.62200 -38.19366 -35.27522 -33.99768 -31.68516 -30.05876 -28.87905 -28.17586 -27.94470 -26.76435 -24.77776 -23.66288 -22.49226 -19.86382 -19.25231 -18.47055 -18.35454 -17.71222 -17.05314 -16.70979 -16.28492 -15.97811 -15.86614 -15.73936 -15.63199 -15.12499 -14.69473 -14.45103 -14.33086 -13.92767 -13.63132 -13.38952 -13.36154 -12.89737 -12.74021 -12.64329 -12.63234 -12.33168 -12.20656 -12.14139 -11.99960 -11.91333 -11.49367 -10.97044 -10.82874 -10.52034 -10.40019 -9.86203 -8.14632 -8.11046 -6.21676 0.17075 0.51585 1.40722 1.42249 1.53450 2.33817 2.42818 2.55225 2.70142 3.20210 3.33228 3.79115 4.00566 4.08390 4.12101 4.21349 4.27283 4.45340 4.48078 4.56610 4.70055 4.73934 4.76666 4.77822 4.84708 4.99334 5.03121 5.13254 5.13777 5.22632 5.26877 5.44875 5.51271 5.53824 5.55883 5.60822 5.82161 5.90638 6.21911 6.34527 6.49570 6.89824 6.94395 7.46059 8.97953 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038860 B = 0.003115 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.368924 B = 8986.185326 C = 9504.881798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.020 3.980 4 C -0.120 4.120 5 C -0.160 4.160 6 C 0.211 3.789 7 N -0.727 5.727 8 C 0.144 3.856 9 C -0.063 4.063 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.039 3.961 13 C -0.512 4.512 14 H 0.070 0.930 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.956 3.044 18 H -0.258 1.258 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.216 4.216 22 C 0.088 3.912 23 F -0.150 7.150 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.410 0.590 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.067 0.933 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.481 -8.212 0.004 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C -0.027 4.027 4 C -0.139 4.139 5 C -0.182 4.182 6 C 0.106 3.894 7 N -0.358 5.358 8 C 0.019 3.981 9 C -0.064 4.064 10 C -0.177 4.177 11 C -0.177 4.177 12 C 0.002 3.998 13 C -0.550 4.550 14 H 0.088 0.912 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.782 3.218 18 H -0.182 1.182 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.240 4.240 22 C 0.068 3.932 23 F -0.129 7.129 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.188 0.812 28 H 0.178 0.822 29 H 0.249 0.751 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.068 0.932 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.997 -8.461 0.004 23.568 hybrid contribution 1.191 0.704 0.000 1.384 sum -20.806 -7.757 0.004 22.205 Atomic orbital electron populations 1.23344 0.76221 1.05444 1.02508 1.86082 1.23655 1.25980 1.90023 1.18824 0.90080 0.86629 1.07120 1.21171 1.01222 0.89755 1.01746 1.20787 0.91392 0.99129 1.06921 1.17642 0.91956 0.85317 0.94474 1.44708 1.05331 1.04560 1.81211 1.21246 0.80242 0.96887 0.99753 1.20658 0.96256 0.92759 0.96700 1.21670 0.99690 1.00486 0.95887 1.21668 0.99693 1.00480 0.95892 1.18984 0.90535 0.95890 0.94427 1.21628 0.91639 0.93287 1.48466 0.91203 1.25921 0.97355 1.01324 0.95575 1.70118 1.01007 1.34057 1.52741 0.85527 0.78542 0.80481 0.77293 1.18196 1.21048 1.21055 1.20448 1.00651 0.90013 1.12932 1.16955 0.86822 0.81974 1.07450 1.91427 1.77345 1.49770 1.94356 0.91333 0.91327 0.86813 0.81246 0.82238 0.75133 0.93556 0.93553 0.91377 0.93044 0.94437 0.94434 0.93047 0.91371 0.99425 0.99427 0.93193 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.02 10.36 -94.20 -0.98 -9.00 16 3 C 0.02 0.50 6.69 22.52 0.15 0.65 16 4 C -0.12 -2.16 9.03 22.35 0.20 -1.96 16 5 C -0.16 -2.99 9.89 22.40 0.22 -2.77 16 6 C 0.21 5.24 6.65 38.14 0.25 5.49 16 7 N -0.73 -18.19 5.14 -339.29 -1.75 -19.93 16 8 C 0.14 4.62 3.80 86.38 0.33 4.95 16 9 C -0.06 -2.30 0.54 -52.18 -0.03 -2.33 16 10 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 11 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 12 C 0.04 1.94 4.04 29.85 0.12 2.06 16 13 C -0.51 -27.18 7.65 25.60 0.20 -26.98 16 14 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 15 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 16 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.22 -6.27 9.29 22.43 0.21 -6.06 16 22 C 0.09 2.62 7.30 22.44 0.16 2.78 16 23 F -0.15 -4.95 17.11 44.97 0.77 -4.18 16 24 H 0.07 0.60 7.66 -2.39 -0.02 0.59 16 25 H 0.07 0.60 7.66 -2.38 -0.02 0.59 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.17 1.77 6.29 -2.91 -0.02 1.75 16 28 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.41 8.56 6.18 -92.71 -0.57 7.99 16 30 H 0.05 1.59 7.94 -2.39 -0.02 1.57 16 31 H 0.05 1.59 7.96 -2.39 -0.02 1.57 16 32 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 33 H 0.05 1.85 6.61 -2.39 -0.02 1.83 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.85 6.62 -2.38 -0.02 1.83 16 37 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.13 3.94 6.73 -2.91 -0.02 3.92 16 Total: -1.00 -66.63 333.14 5.37 -61.26 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.46 Total: 12.06 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 4.55 Total: -29.40 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.46 Total: -76.20 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.98 Total: -9.00 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.77 Total: -4.18 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.63 5.37 -61.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155962285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.317 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds