Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99671 * 2 1 4 4 C 1.50700 * 109.47255 * 66.04879 * 3 2 1 5 5 H 1.07998 * 120.00289 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99793 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99708 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00294 * 359.97438 * 6 4 3 9 9 H 1.48492 * 109.47205 * 89.99961 * 8 6 4 10 10 H 1.48498 * 109.47167 * 210.00429 * 8 6 4 11 11 H 1.48507 * 109.47036 * 330.00491 * 8 6 4 12 12 C 1.46899 * 111.00025 * 236.04564 * 2 1 3 13 13 C 1.50696 * 109.47026 * 293.95373 * 12 2 1 14 14 C 1.38342 * 119.94021 * 90.00157 * 13 12 2 15 15 C 1.38302 * 120.24234 * 179.97438 * 14 13 12 16 16 C 1.38043 * 120.12264 * 0.03635 * 15 14 13 17 17 C 1.39315 * 119.87647 * 0.23931 * 16 15 14 18 18 C 1.48391 * 120.12018 * 179.71882 * 17 16 15 19 19 C 1.39342 * 120.11975 * 179.72436 * 18 17 16 20 20 C 1.38014 * 119.87409 * 179.70329 * 19 18 17 21 21 C 1.38323 * 120.12303 * 0.59650 * 20 19 18 22 22 C 1.38323 * 120.24064 * 359.68019 * 21 20 19 23 23 C 1.38008 * 120.12334 * 0.02562 * 22 21 20 24 24 C 1.38002 * 119.93805 * 269.97401 * 13 12 2 25 25 H 1.09001 * 109.46950 * 183.95664 * 1 2 3 26 26 H 1.09004 * 109.47457 * 303.95062 * 1 2 3 27 27 H 1.09003 * 109.47483 * 63.95532 * 1 2 3 28 28 H 1.09001 * 109.46825 * 186.04987 * 3 2 1 29 29 H 1.08995 * 109.47120 * 306.04538 * 3 2 1 30 30 H 0.97000 * 120.00096 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47244 * 173.94983 * 12 2 1 32 32 H 1.08999 * 109.46989 * 53.95173 * 12 2 1 33 33 H 1.07998 * 119.88012 * 359.97438 * 14 13 12 34 34 H 1.07999 * 119.93894 * 180.02562 * 15 14 13 35 35 H 1.08002 * 120.05911 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.06032 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.94027 * 180.31647 * 20 19 18 38 38 H 1.07997 * 119.87955 * 179.70002 * 21 20 19 39 39 H 1.08004 * 119.93253 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.06190 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.05930 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5116 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7134 3.9394 2.6614 8 14 2.9997 4.2763 0.2309 9 1 2.0631 4.9798 -0.6817 10 1 3.8861 5.2680 0.8912 11 1 3.8237 3.3176 -0.5486 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.4499 -2.7023 -1.4948 15 6 0.1149 -4.0361 -1.3477 16 6 0.9640 -4.8938 -0.6778 17 6 2.1580 -4.4126 -0.1451 18 6 3.0718 -5.3286 0.5815 19 6 4.2687 -4.8485 1.1094 20 6 5.1120 -5.7035 1.7895 21 6 4.7768 -7.0374 1.9370 22 6 3.5926 -7.5204 1.4101 23 6 2.7390 -6.6731 0.7333 24 6 2.4936 -3.0692 -0.3019 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3634 0.5739 0.8525 27 1 -0.3634 0.4512 -0.9233 28 1 3.0796 1.3445 -0.1083 29 1 1.5610 1.9273 -0.8309 30 1 1.9879 4.8555 2.8234 31 1 3.0797 -0.6611 -1.1757 32 1 1.5610 -0.3873 -2.0628 33 1 -0.2177 -2.0346 -2.0192 34 1 -0.8128 -4.4072 -1.7576 35 1 0.7012 -5.9351 -0.5631 36 1 4.5339 -3.8083 0.9902 37 1 6.0375 -5.3314 2.2035 38 1 5.4418 -7.7040 2.4658 39 1 3.3356 -8.5628 1.5285 40 1 1.8145 -7.0512 0.3226 41 1 3.4200 -2.6918 0.1052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157807196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = 54.652390 kcal Electronic energy + Delta-G solvation = -20587.559625 eV Core-core repulsion = 17624.997151 eV Total energy + Delta-G solvation = -2962.562473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94845 -38.54298 -36.46904 -33.01496 -32.40051 -31.59555 -30.78745 -28.94777 -27.76807 -26.69597 -23.97450 -23.54881 -22.66074 -21.18630 -20.54668 -19.89275 -17.53854 -16.81353 -15.96429 -15.74653 -15.53823 -14.82455 -14.58703 -14.34223 -14.06804 -13.79541 -13.71748 -13.35764 -13.28239 -13.08659 -12.52608 -12.23289 -12.19151 -11.78190 -11.55251 -11.42386 -11.19429 -11.07941 -10.84473 -10.74562 -10.62203 -10.14971 -9.86346 -9.65384 -9.29677 -9.05133 -8.66275 -8.57356 -7.98721 -7.39332 -6.05439 -4.02855 0.69426 1.30697 1.52608 1.93582 3.27375 3.35222 3.36763 3.60251 4.08595 4.41261 4.55734 4.65865 4.84711 4.90666 4.94873 5.05460 5.10760 5.23601 5.28180 5.33984 5.34351 5.48614 5.57174 5.72420 5.86085 5.87717 5.94485 6.11791 6.13594 6.16391 6.24288 6.30373 6.33579 6.41074 6.54802 6.68142 6.74104 6.81433 6.83944 6.90037 6.98068 7.09494 7.58038 7.88033 8.02403 8.65123 9.03525 9.55934 11.07709 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003725 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.770014 B = 7515.896044 C = 8432.659559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.524 5.524 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.086 3.914 13 C -0.060 4.060 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.054 4.054 18 C -0.036 4.036 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.086 4.086 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.011 0.989 28 H 0.028 0.972 29 H -0.016 1.016 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -21.399 -7.345 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.042 4.042 13 C -0.060 4.060 14 C -0.129 4.129 15 C -0.139 4.139 16 C -0.135 4.135 17 C -0.054 4.054 18 C -0.036 4.036 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.002 0.998 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.464 -21.426 -6.808 22.616 hybrid contribution 0.182 1.063 -1.279 1.673 sum 2.646 -20.363 -8.087 22.069 Atomic orbital electron populations 1.22324 0.88196 1.00269 1.00705 1.61985 1.07609 1.16173 1.39046 1.20221 0.95213 0.83905 0.97127 1.21028 1.35569 0.97181 1.00907 0.90101 1.24900 0.95776 0.97339 0.95334 1.69894 1.46870 1.13236 1.23914 0.86862 0.80641 0.80067 0.82159 1.20370 1.21124 1.19191 1.21110 1.00447 0.89483 0.93201 1.19841 0.94120 0.95572 0.96482 1.21149 0.96350 0.95408 0.99949 1.20981 0.99433 0.93601 0.99894 1.21100 0.94033 0.99516 0.98844 1.18728 0.94570 0.93117 0.98970 1.18845 0.94132 0.93008 0.97622 1.21360 0.93684 1.00279 0.97439 1.21122 0.99730 0.93679 0.98956 1.21188 0.97140 0.95756 1.00284 1.21055 0.94717 0.99580 0.98514 1.21218 0.99767 0.92817 0.99500 1.21110 0.99959 0.91857 0.97521 0.92966 0.90174 0.97098 0.95351 0.99812 0.92656 0.90471 0.94844 0.86291 0.86168 0.86210 0.85343 0.85861 0.86229 0.86110 0.85861 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.95 60.06 0.54 1.19 16 2 N -0.52 -11.09 4.74 -245.83 -1.17 -12.25 16 3 C 0.16 3.92 3.79 -4.97 -0.02 3.90 16 4 C -0.51 -14.51 9.01 -34.44 -0.31 -14.82 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.09 1.47 5.11 -4.98 -0.03 1.45 16 13 C -0.06 -0.92 4.88 -104.67 -0.51 -1.43 16 14 C -0.11 -1.50 7.96 -39.52 -0.31 -1.81 16 15 C -0.12 -1.45 10.03 -39.63 -0.40 -1.85 16 16 C -0.12 -1.41 9.43 -39.25 -0.37 -1.78 16 17 C -0.05 -0.73 5.88 -104.90 -0.62 -1.34 16 18 C -0.04 -0.45 5.88 -104.90 -0.62 -1.07 16 19 C -0.11 -1.33 9.43 -39.25 -0.37 -1.70 16 20 C -0.12 -1.23 10.03 -39.63 -0.40 -1.62 16 21 C -0.13 -1.20 10.04 -39.52 -0.40 -1.60 16 22 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 23 C -0.12 -1.24 9.43 -39.26 -0.37 -1.61 16 24 C -0.09 -1.27 9.08 -39.25 -0.36 -1.63 16 25 H 0.05 0.91 6.16 -51.93 -0.32 0.59 16 26 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 29 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 32 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.12 1.49 8.03 -52.49 -0.42 1.07 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.15 6.21 -52.49 -0.33 0.83 16 36 H 0.13 1.50 6.21 -52.48 -0.33 1.17 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 1.09 6.21 -52.48 -0.33 0.77 16 41 H 0.13 1.81 6.21 -52.49 -0.33 1.48 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -31.51 333.66 -10.71 -42.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.65 Total: 0.46 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -5.03 Total: -25.39 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.39 Total: -39.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.51 -10.71 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157807196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.872 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds