Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99671 * 2 1 4 4 C 1.50700 * 109.47255 * 66.04879 * 3 2 1 5 5 H 1.07998 * 120.00289 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99793 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99708 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00294 * 359.97438 * 6 4 3 9 9 H 1.48492 * 109.47205 * 89.99961 * 8 6 4 10 10 H 1.48498 * 109.47167 * 210.00429 * 8 6 4 11 11 H 1.48507 * 109.47036 * 330.00491 * 8 6 4 12 12 C 1.46899 * 111.00025 * 236.04564 * 2 1 3 13 13 C 1.50696 * 109.47026 * 293.95373 * 12 2 1 14 14 C 1.38342 * 119.94021 * 90.00157 * 13 12 2 15 15 C 1.38302 * 120.24234 * 179.97438 * 14 13 12 16 16 C 1.38043 * 120.12264 * 0.03635 * 15 14 13 17 17 C 1.39315 * 119.87647 * 0.23931 * 16 15 14 18 18 C 1.48391 * 120.12018 * 179.71882 * 17 16 15 19 19 C 1.39342 * 120.11975 * 179.72436 * 18 17 16 20 20 C 1.38014 * 119.87409 * 179.70329 * 19 18 17 21 21 C 1.38323 * 120.12303 * 0.59650 * 20 19 18 22 22 C 1.38323 * 120.24064 * 359.68019 * 21 20 19 23 23 C 1.38008 * 120.12334 * 0.02562 * 22 21 20 24 24 C 1.38002 * 119.93805 * 269.97401 * 13 12 2 25 25 H 1.09001 * 109.46950 * 183.95664 * 1 2 3 26 26 H 1.09004 * 109.47457 * 303.95062 * 1 2 3 27 27 H 1.09003 * 109.47483 * 63.95532 * 1 2 3 28 28 H 1.09001 * 109.46825 * 186.04987 * 3 2 1 29 29 H 1.08995 * 109.47120 * 306.04538 * 3 2 1 30 30 H 0.97000 * 120.00096 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47244 * 173.94983 * 12 2 1 32 32 H 1.08999 * 109.46989 * 53.95173 * 12 2 1 33 33 H 1.07998 * 119.88012 * 359.97438 * 14 13 12 34 34 H 1.07999 * 119.93894 * 180.02562 * 15 14 13 35 35 H 1.08002 * 120.05911 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.06032 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.94027 * 180.31647 * 20 19 18 38 38 H 1.07997 * 119.87955 * 179.70002 * 21 20 19 39 39 H 1.08004 * 119.93253 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.06190 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.05930 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5116 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7134 3.9394 2.6614 8 14 2.9997 4.2763 0.2309 9 1 2.0631 4.9798 -0.6817 10 1 3.8861 5.2680 0.8912 11 1 3.8237 3.3176 -0.5486 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.4499 -2.7023 -1.4948 15 6 0.1149 -4.0361 -1.3477 16 6 0.9640 -4.8938 -0.6778 17 6 2.1580 -4.4126 -0.1451 18 6 3.0718 -5.3286 0.5815 19 6 4.2687 -4.8485 1.1094 20 6 5.1120 -5.7035 1.7895 21 6 4.7768 -7.0374 1.9370 22 6 3.5926 -7.5204 1.4101 23 6 2.7390 -6.6731 0.7333 24 6 2.4936 -3.0692 -0.3019 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3634 0.5739 0.8525 27 1 -0.3634 0.4512 -0.9233 28 1 3.0796 1.3445 -0.1083 29 1 1.5610 1.9273 -0.8309 30 1 1.9879 4.8555 2.8234 31 1 3.0797 -0.6611 -1.1757 32 1 1.5610 -0.3873 -2.0628 33 1 -0.2177 -2.0346 -2.0192 34 1 -0.8128 -4.4072 -1.7576 35 1 0.7012 -5.9351 -0.5631 36 1 4.5339 -3.8083 0.9902 37 1 6.0375 -5.3314 2.2035 38 1 5.4418 -7.7040 2.4658 39 1 3.3356 -8.5628 1.5285 40 1 1.8145 -7.0512 0.3226 41 1 3.4200 -2.6918 0.1052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157807196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = 37.288785 kcal Electronic energy + Delta-G solvation = -20588.312567 eV Core-core repulsion = 17624.997151 eV Total energy + Delta-G solvation = -2963.315416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90167 -39.52405 -37.96507 -34.80084 -33.66877 -32.71755 -31.71304 -30.10362 -29.45184 -28.10737 -25.53062 -24.47641 -23.73408 -22.32483 -21.95548 -21.08582 -19.01941 -18.35497 -16.87707 -16.82720 -16.63081 -16.44953 -16.13505 -15.79772 -15.15210 -14.99631 -14.76573 -14.52146 -14.33270 -14.19596 -14.11738 -13.59680 -13.50199 -13.22229 -12.87621 -12.67852 -12.63706 -12.47293 -12.28734 -11.98147 -11.81107 -11.80011 -11.55213 -11.38545 -10.80492 -10.57306 -9.84774 -9.72409 -9.07356 -8.87693 -8.29189 -6.32985 -0.21298 0.48303 0.51446 1.02041 1.33790 1.35915 1.46845 2.33643 2.67695 3.03596 3.11771 3.46204 3.63541 3.77478 3.98379 4.06235 4.14084 4.19050 4.33387 4.38563 4.44943 4.46472 4.51877 4.59448 4.62718 4.66508 4.82713 4.87570 4.98430 5.00090 5.05731 5.16763 5.17190 5.21978 5.38737 5.49230 5.50943 5.60684 5.62494 5.73532 5.84104 5.95532 6.07697 6.13477 6.32696 6.62268 6.73045 7.30497 8.87599 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003725 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.770014 B = 7515.896044 C = 8432.659559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.544 5.544 3 C 0.171 3.829 4 C -0.517 4.517 5 H 0.035 0.965 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.248 1.248 12 C 0.090 3.910 13 C -0.078 4.078 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.060 4.060 18 C -0.060 4.060 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.106 4.106 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.024 0.976 28 H 0.031 0.969 29 H -0.010 1.010 30 H 0.267 0.733 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -23.718 -9.151 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.268 5.268 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.172 1.172 12 C -0.037 4.037 13 C -0.079 4.079 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.134 4.134 17 C -0.060 4.060 18 C -0.060 4.060 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.125 4.125 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.007 0.993 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.630 -23.770 -8.627 25.424 hybrid contribution 0.107 1.613 -0.618 1.731 sum 2.737 -22.157 -9.245 24.164 Atomic orbital electron populations 1.22211 0.87501 1.01110 0.99798 1.61849 1.08448 1.14636 1.41860 1.19972 0.95311 0.85557 0.94718 1.21247 1.34937 0.97531 1.01837 0.94644 1.25865 0.96958 0.98374 0.97792 1.70053 1.48557 1.13893 1.26404 0.85691 0.79243 0.78710 0.79154 1.19175 1.20612 1.17197 1.21099 1.00322 0.90289 0.92037 1.19730 0.95462 0.94414 0.98268 1.21319 0.95783 0.96587 1.00039 1.21346 1.00350 0.92758 0.98898 1.21475 0.93157 1.00988 0.97769 1.18948 0.95432 0.92705 0.98943 1.18982 0.94384 0.93960 0.98722 1.21468 0.94529 1.00348 0.98663 1.21379 1.00106 0.94276 0.98796 1.21573 0.97573 0.95560 0.99632 1.21453 0.94226 1.00878 0.97404 1.21496 1.00753 0.92070 0.99431 1.21155 1.00011 0.92911 0.98410 0.90822 0.93573 0.95728 0.95140 0.99263 0.92386 0.90551 0.93615 0.85267 0.82990 0.83414 0.86376 0.84487 0.83587 0.83172 0.83953 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 8.95 127.69 1.14 2.80 16 2 N -0.54 -23.29 4.74 -931.66 -4.42 -27.71 16 3 C 0.17 8.38 3.79 85.56 0.32 8.70 16 4 C -0.52 -30.58 9.01 25.60 0.23 -30.35 16 5 H 0.04 2.35 7.37 -2.91 -0.02 2.33 16 6 C 0.01 0.43 5.47 84.66 0.46 0.90 16 7 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 8 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 12 C 0.09 3.06 5.11 85.56 0.44 3.50 16 13 C -0.08 -2.38 4.88 -19.90 -0.10 -2.47 16 14 C -0.12 -3.03 7.96 22.31 0.18 -2.85 16 15 C -0.12 -2.45 10.03 22.24 0.22 -2.23 16 16 C -0.12 -2.53 9.43 22.48 0.21 -2.31 16 17 C -0.06 -1.59 5.88 -20.04 -0.12 -1.71 16 18 C -0.06 -1.48 5.88 -20.04 -0.12 -1.60 16 19 C -0.13 -3.26 9.43 22.48 0.21 -3.05 16 20 C -0.13 -2.58 10.03 22.24 0.22 -2.36 16 21 C -0.13 -2.11 10.04 22.31 0.22 -1.88 16 22 C -0.12 -1.98 10.03 22.24 0.22 -1.75 16 23 C -0.12 -2.31 9.43 22.48 0.21 -2.10 16 24 C -0.11 -3.21 9.08 22.48 0.20 -3.00 16 25 H 0.07 2.55 6.16 -2.39 -0.01 2.54 16 26 H 0.05 2.11 6.76 -2.39 -0.02 2.09 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.03 1.47 6.99 -2.39 -0.02 1.46 16 29 H -0.01 -0.49 7.55 -2.39 -0.02 -0.51 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.08 2.55 7.87 -2.39 -0.02 2.54 16 32 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 33 H 0.13 2.96 8.03 -2.91 -0.02 2.93 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 2.30 6.21 -2.91 -0.02 2.29 16 36 H 0.12 3.00 6.21 -2.91 -0.02 2.98 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.14 2.07 6.21 -2.91 -0.02 2.05 16 41 H 0.12 3.58 6.21 -2.91 -0.02 3.56 16 Total: -1.00 -70.44 333.66 2.90 -67.54 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.96 Total: 15.52 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.18 Total: -41.78 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -4.12 Total: -87.52 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -70.44 2.90 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157807196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.825 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds