Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46693 * 2 1 4 4 C 1.50697 * 109.47523 * 119.99832 * 2 1 3 5 5 C 1.33380 * 125.20785 * 255.60851 * 4 2 1 6 6 C 1.38425 * 114.92674 * 179.97438 * 5 4 2 7 7 C 1.33397 * 114.91479 * 359.97438 * 6 5 4 8 8 S 1.75878 * 109.59586 * 359.97438 * 7 6 5 9 9 N 1.46894 * 109.47225 * 240.00601 * 2 1 3 10 10 C 1.46903 * 111.00026 * 315.51041 * 9 2 1 11 11 C 1.46897 * 111.00237 * 79.46543 * 9 2 1 12 12 C 1.53003 * 109.47229 * 153.15309 * 11 9 2 13 13 C 1.52995 * 109.47132 * 306.53040 * 12 11 9 14 14 C 1.53001 * 109.46943 * 66.53002 * 12 11 9 15 15 C 1.52996 * 109.47388 * 186.52637 * 12 11 9 16 16 C 1.50701 * 109.47538 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99638 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00291 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99818 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00161 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47192 * 90.00259 * 20 18 16 22 22 H 1.48500 * 109.47432 * 210.00155 * 20 18 16 23 23 H 1.48501 * 109.47148 * 330.00147 * 20 18 16 24 24 H 1.09008 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47639 * 299.99205 * 1 2 3 26 26 H 1.09004 * 109.47607 * 60.00355 * 1 2 3 27 27 H 1.08000 * 122.53650 * 359.94974 * 5 4 2 28 28 H 1.07996 * 122.54758 * 180.02562 * 6 5 4 29 29 H 1.08002 * 125.19780 * 180.26712 * 7 6 5 30 30 H 1.09002 * 109.47202 * 92.89936 * 10 9 2 31 31 H 1.09001 * 109.47222 * 212.90112 * 10 9 2 32 32 H 1.09005 * 109.46754 * 332.90048 * 10 9 2 33 33 H 1.08998 * 109.47135 * 273.14851 * 11 9 2 34 34 H 1.08998 * 109.47720 * 33.15341 * 11 9 2 35 35 H 1.09000 * 109.47513 * 59.99957 * 13 12 11 36 36 H 1.09000 * 109.47626 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47077 * 299.99813 * 13 12 11 38 38 H 1.09000 * 109.47726 * 46.64568 * 14 12 11 39 39 H 1.09009 * 109.47268 * 166.64807 * 14 12 11 40 40 H 1.09002 * 109.46955 * 286.63838 * 14 12 11 41 41 H 1.09002 * 109.47451 * 300.00192 * 15 12 11 42 42 H 1.09008 * 109.47039 * 59.99986 * 15 12 11 43 43 H 0.97000 * 119.99677 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.5441 -0.1135 2.3079 6 6 2.9398 -0.9729 3.3183 7 6 2.7488 -2.2679 3.0614 8 16 2.0313 -2.4533 1.4664 9 7 2.0196 -0.6923 -1.1994 10 6 1.2727 -1.9359 -1.4313 11 6 1.9588 0.1854 -2.3757 12 6 3.0215 -0.2449 -3.3888 13 6 4.3877 -0.3004 -2.7023 14 6 2.6707 -1.6287 -3.9392 15 6 3.0688 0.7639 -4.5381 16 6 4.1160 0.3404 -5.5356 17 1 4.6901 -0.5587 -5.3670 18 6 4.3404 1.1001 -6.6641 19 7 3.6410 2.1947 -6.8697 20 14 5.6380 0.5747 -7.9009 21 1 5.0198 -0.3093 -8.9215 22 1 6.2045 1.7762 -8.5647 23 1 6.7211 -0.1605 -7.1999 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.6427 0.9592 2.3859 28 1 3.3698 -0.6218 4.2446 29 1 2.9928 -3.0783 3.7324 30 1 0.4386 -1.7385 -2.1047 31 1 1.9333 -2.6784 -1.8791 32 1 0.8921 -2.3134 -0.4822 33 1 0.9715 0.1134 -2.8321 34 1 2.1437 1.2154 -2.0706 35 1 4.3540 -1.0192 -1.8836 36 1 5.1447 -0.6075 -3.4239 37 1 4.6376 0.6854 -2.3103 38 1 1.6160 -1.6542 -4.2132 39 1 3.2798 -1.8349 -4.8194 40 1 2.8665 -2.3831 -3.1772 41 1 2.0955 0.8035 -5.0272 42 1 3.3187 1.7499 -4.1460 43 1 3.7992 2.7293 -7.6634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157872359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = 14.952539 kcal Electronic energy + Delta-G solvation = -20584.332148 eV Core-core repulsion = 17755.492111 eV Total energy + Delta-G solvation = -2828.840037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30387 -38.56914 -36.98665 -34.42948 -32.02149 -29.31012 -28.99149 -28.71929 -27.60545 -26.10427 -25.10749 -24.00625 -21.58725 -20.20645 -19.40634 -18.28507 -17.87200 -16.86836 -16.50118 -16.19314 -16.12999 -15.31758 -14.78581 -14.70912 -14.39361 -14.22135 -14.01151 -13.84618 -13.54324 -13.29715 -13.11448 -13.08503 -12.87366 -12.73649 -12.59857 -12.53423 -12.30335 -12.11094 -11.97286 -11.88832 -11.75986 -11.38231 -11.23221 -10.81338 -10.69353 -10.48187 -9.53606 -9.25928 -9.12471 -8.12361 -6.18623 0.20035 0.84173 1.24360 1.41442 1.41932 1.52654 1.93521 2.44901 3.01646 3.21637 3.74725 3.99717 4.18061 4.23064 4.30839 4.33955 4.40455 4.44246 4.64220 4.67199 4.74694 4.77691 4.82085 4.85163 4.88073 5.01269 5.06424 5.13268 5.15297 5.25238 5.31506 5.32910 5.50182 5.56037 5.57712 5.64110 5.66404 5.71929 5.90436 5.96110 6.13627 6.20037 6.40357 6.96198 7.48310 8.99912 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031442 B = 0.003821 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.314749 B = 7325.766778 C = 7460.418610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.144 3.856 3 H 0.092 0.908 4 C -0.162 4.162 5 C -0.151 4.151 6 C -0.141 4.141 7 C -0.236 4.236 8 S 0.106 5.894 9 N -0.530 5.530 10 C 0.019 3.981 11 C 0.080 3.920 12 C -0.048 4.048 13 C -0.101 4.101 14 C -0.125 4.125 15 C 0.041 3.959 16 C -0.512 4.512 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.954 3.046 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.264 1.264 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.179 0.821 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.067 0.933 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 -8.747 19.997 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.034 3.966 3 H 0.110 0.890 4 C -0.280 4.280 5 C -0.182 4.182 6 C -0.171 4.171 7 C -0.371 4.371 8 S 0.370 5.630 9 N -0.253 5.253 10 C -0.129 4.129 11 C -0.048 4.048 12 C -0.049 4.049 13 C -0.159 4.159 14 C -0.182 4.182 15 C 0.004 3.996 16 C -0.550 4.550 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.579 5.579 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.189 1.189 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.196 0.804 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.453 -9.993 19.118 22.251 hybrid contribution 0.224 1.742 -0.355 1.792 sum -5.229 -8.251 18.764 21.154 Atomic orbital electron populations 1.22469 0.95043 1.02932 1.02857 1.20290 0.93572 0.96705 0.86027 0.88969 1.24495 1.07337 0.96580 0.99597 1.20308 1.02298 1.01926 0.93675 1.20344 1.03264 0.92360 1.01171 1.26130 1.08661 1.01256 1.01051 1.84270 1.61426 1.04798 1.12554 1.62100 1.54964 1.05669 1.02542 1.22820 0.97121 0.92569 1.00400 1.22162 0.97178 0.95414 0.90046 1.20425 0.95028 0.95805 0.93652 1.21440 0.95674 0.99978 0.98771 1.21914 0.99772 0.96153 1.00318 1.18991 0.94716 0.93216 0.92689 1.21610 1.19438 1.08679 1.05315 0.91820 1.25877 0.98532 0.95187 1.00346 1.70104 1.42832 1.16502 1.28462 0.85614 0.79612 0.77657 0.79198 1.20077 1.21227 1.18861 0.91664 0.90815 0.92331 0.83699 0.82767 0.80364 0.94280 0.90554 0.91461 0.94810 0.92305 0.91726 0.94734 0.95360 0.94208 0.94036 0.91390 0.99716 0.99730 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 8.55 71.98 0.62 -2.97 16 2 C 0.14 3.45 2.70 44.17 0.12 3.57 16 3 H 0.09 2.28 7.50 -2.38 -0.02 2.26 16 4 C -0.16 -3.70 5.39 24.58 0.13 -3.56 16 5 C -0.15 -3.17 10.03 21.21 0.21 -2.95 16 6 C -0.14 -2.60 10.18 21.22 0.22 -2.39 16 7 C -0.24 -4.29 11.23 66.72 0.75 -3.54 16 8 S 0.11 2.21 20.04 -56.49 -1.13 1.08 16 9 N -0.53 -14.68 3.46 -901.48 -3.12 -17.80 16 10 C 0.02 0.46 6.64 127.69 0.85 1.31 16 11 C 0.08 2.68 3.78 86.30 0.33 3.01 16 12 C -0.05 -1.94 0.61 -52.18 -0.03 -1.97 16 13 C -0.10 -3.97 7.95 71.98 0.57 -3.40 16 14 C -0.12 -4.62 7.23 71.98 0.52 -4.10 16 15 C 0.04 2.15 4.04 29.85 0.12 2.27 16 16 C -0.51 -28.58 7.46 25.60 0.19 -28.39 16 17 H 0.06 3.44 5.77 -2.91 -0.02 3.42 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 20 Si 0.95 44.80 29.54 68.60 2.03 46.82 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H 0.06 1.29 6.24 -2.38 -0.01 1.28 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.27 7.84 -2.39 -0.02 1.25 16 27 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.04 0.96 7.37 -2.39 -0.02 0.95 16 31 H 0.08 1.93 5.69 -2.39 -0.01 1.91 16 32 H 0.07 1.46 3.84 -8.78 -0.03 1.42 16 33 H 0.03 1.14 7.32 -2.39 -0.02 1.12 16 34 H 0.06 2.04 7.46 -2.39 -0.02 2.02 16 35 H 0.06 2.28 7.44 -2.39 -0.02 2.26 16 36 H 0.03 1.45 6.62 -2.39 -0.02 1.43 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 1.40 7.99 -2.39 -0.02 1.39 16 39 H 0.04 1.72 6.30 -2.38 -0.02 1.70 16 40 H 0.07 2.16 5.54 -2.39 -0.01 2.15 16 41 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -63.10 336.86 4.07 -59.03 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.95 Total: 10.86 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 5.06 Total: -42.81 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.83 Total: -74.98 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.13 Total: 1.08 kcal Total: -63.10 4.07 -59.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157872359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.984 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds