Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46299 * 2 1 4 4 C 1.50691 * 109.47400 * 239.99869 * 2 1 3 5 5 C 1.33395 * 125.20644 * 99.99574 * 4 2 1 6 6 C 1.38421 * 114.92244 * 180.28898 * 5 4 2 7 7 C 1.33392 * 114.92067 * 359.49687 * 6 5 4 8 8 S 1.75883 * 109.59203 * 0.47265 * 7 6 5 9 9 N 1.46901 * 109.47075 * 119.99189 * 2 1 3 10 10 C 1.46896 * 110.99901 * 176.04859 * 9 2 1 11 11 C 1.46893 * 111.00442 * 300.00683 * 9 2 1 12 12 C 1.52998 * 109.47352 * 152.03788 * 11 9 2 13 13 C 1.52999 * 109.47014 * 305.68246 * 12 11 9 14 14 C 1.52994 * 109.47212 * 65.68512 * 12 11 9 15 15 C 1.53003 * 109.47095 * 185.68469 * 12 11 9 16 16 C 1.50700 * 109.46952 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00138 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00228 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99590 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46981 * 90.00166 * 20 18 16 22 22 H 1.48507 * 109.46973 * 209.99512 * 20 18 16 23 23 H 1.48500 * 109.47310 * 329.99893 * 20 18 16 24 24 H 1.08998 * 109.47205 * 60.01087 * 1 2 3 25 25 H 1.09001 * 109.46299 * 180.02562 * 1 2 3 26 26 H 1.08989 * 109.47517 * 299.99875 * 1 2 3 27 27 H 1.08004 * 122.53224 * 0.02647 * 5 4 2 28 28 H 1.08005 * 122.53869 * 179.73238 * 6 5 4 29 29 H 1.07994 * 125.20310 * 180.21140 * 7 6 5 30 30 H 1.09010 * 109.47145 * 68.92346 * 10 9 2 31 31 H 1.08997 * 109.47359 * 188.92251 * 10 9 2 32 32 H 1.09002 * 109.47199 * 308.92374 * 10 9 2 33 33 H 1.09000 * 109.47333 * 272.03616 * 11 9 2 34 34 H 1.09005 * 109.47159 * 32.03619 * 11 9 2 35 35 H 1.09009 * 109.46905 * 60.00223 * 13 12 11 36 36 H 1.08995 * 109.47287 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47337 * 300.00282 * 13 12 11 38 38 H 1.09005 * 109.47051 * 38.07480 * 14 12 11 39 39 H 1.08995 * 109.47438 * 158.07803 * 14 12 11 40 40 H 1.09005 * 109.47177 * 278.08007 * 14 12 11 41 41 H 1.08991 * 109.47224 * 299.99781 * 15 12 11 42 42 H 1.09003 * 109.46862 * 60.00424 * 15 12 11 43 43 H 0.97007 * 120.00094 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4672 -0.1118 -2.3404 6 6 2.8749 -0.9718 -3.3454 7 6 2.7812 -2.2687 -3.0478 8 16 2.1347 -2.4557 -1.4228 9 7 2.0197 -0.6923 1.1995 10 6 3.4851 -0.7943 1.1872 11 6 1.5486 -0.0262 2.4211 12 6 1.4446 -1.0505 3.5528 13 6 0.5672 -2.2204 3.1029 14 6 2.8416 -1.5662 3.9039 15 6 0.8210 -0.3891 4.7835 16 6 0.7180 -1.3982 5.8981 17 1 1.0632 -2.4099 5.7442 18 6 0.1830 -1.0299 7.1143 19 7 -0.2369 0.2022 7.3019 20 14 0.0547 -2.2809 8.4956 21 1 1.2951 -2.2465 9.3113 22 1 -1.1116 -1.9524 9.3542 23 1 -0.1214 -3.6382 7.9194 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 2.4947 0.9625 -2.4483 28 1 3.2447 -0.6195 -4.2970 29 1 3.0559 -3.0799 -3.7056 30 1 3.9194 0.1968 1.3188 31 1 3.8109 -1.4445 1.9990 32 1 3.8123 -1.2108 0.2345 33 1 2.2530 0.7563 2.7030 34 1 0.5687 0.4152 2.2394 35 1 1.0116 -2.6916 2.2261 36 1 0.4935 -2.9503 3.9090 37 1 -0.4281 -1.8529 2.8528 38 1 3.5572 -0.7461 3.8445 39 1 2.8359 -1.9708 4.9160 40 1 3.1271 -2.3492 3.2012 41 1 1.4460 0.4442 5.1041 42 1 -0.1743 -0.0218 4.5334 43 1 -0.6130 0.4615 8.1576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157872492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = 31.536435 kcal Electronic energy + Delta-G solvation = -20616.306299 eV Core-core repulsion = 17788.185394 eV Total energy + Delta-G solvation = -2828.120905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.05262 -37.54213 -35.31172 -32.41571 -31.19176 -28.98361 -27.03501 -26.83625 -26.06478 -24.43110 -23.70781 -22.61215 -20.52199 -19.35703 -17.86495 -16.97585 -16.17770 -15.66683 -15.38421 -14.97169 -14.35969 -14.09350 -13.82583 -13.07943 -12.87743 -12.72581 -12.63171 -12.48642 -12.27998 -12.13588 -11.99414 -11.70856 -11.49666 -11.39613 -11.08908 -10.81724 -10.72375 -10.63947 -10.51804 -10.28277 -10.22358 -9.93438 -9.56912 -8.94253 -8.85279 -8.65119 -8.37764 -8.29007 -7.98712 -5.93934 -3.93463 0.99317 1.67884 2.11458 2.69704 3.34987 3.41668 3.44852 4.13202 4.51694 4.67875 5.00460 5.23745 5.29920 5.41498 5.42532 5.46360 5.51025 5.66633 5.79173 5.79774 5.88611 5.95837 6.04498 6.09201 6.19404 6.24603 6.28896 6.35844 6.37673 6.45345 6.61008 6.76242 6.85204 6.92425 7.25206 7.27081 7.33036 7.41333 7.51200 7.74407 7.89900 8.06758 8.51837 9.11975 9.69026 11.17758 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.003807 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.657293 B = 7353.247667 C = 7542.317780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.146 3.854 3 H 0.053 0.947 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.135 4.135 7 C -0.239 4.239 8 S 0.149 5.851 9 N -0.527 5.527 10 C 0.007 3.993 11 C 0.060 3.940 12 C -0.050 4.050 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.034 3.966 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.019 0.981 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.011 0.989 42 H 0.013 0.987 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -1.771 -19.738 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.070 0.930 4 C -0.272 4.272 5 C -0.184 4.184 6 C -0.166 4.166 7 C -0.375 4.375 8 S 0.413 5.587 9 N -0.251 5.251 10 C -0.141 4.141 11 C -0.067 4.067 12 C -0.051 4.051 13 C -0.170 4.170 14 C -0.190 4.190 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.038 0.962 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.985 -3.387 -18.707 19.654 hybrid contribution 0.642 1.561 -0.149 1.695 sum 5.628 -1.826 -18.856 19.762 Atomic orbital electron populations 1.21958 0.93024 1.03243 1.01960 1.20111 0.95721 0.94224 0.86379 0.92976 1.24592 1.06174 0.96909 0.99574 1.20061 1.04044 1.00971 0.93305 1.20056 1.03659 0.92400 1.00497 1.25781 1.09876 1.00539 1.01299 1.84613 1.61407 1.04049 1.08658 1.62123 1.10162 1.51621 1.01215 1.22877 0.87599 1.00487 1.03169 1.22518 0.99557 0.95702 0.88941 1.20540 0.95472 0.94827 0.94230 1.21588 0.98032 0.97878 0.99548 1.22034 0.96030 0.99161 1.01811 1.19129 0.95247 0.95512 0.90482 1.21237 1.39489 0.96974 0.96605 0.92244 1.25010 0.95869 0.95081 0.98633 1.69968 1.42430 1.17233 1.24188 0.86678 0.77469 0.81938 0.82424 1.20856 1.21416 1.19894 0.92392 0.91417 0.91130 0.84855 0.84928 0.82411 0.96240 0.89277 0.92126 0.94897 0.90947 0.93665 0.92910 0.94507 0.94686 0.91395 0.93980 0.97027 0.96817 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.05 37.16 0.34 -1.47 16 2 C 0.15 1.89 2.50 -68.87 -0.17 1.71 16 3 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 4 C -0.15 -1.87 3.94 -36.01 -0.14 -2.01 16 5 C -0.15 -1.67 10.04 -41.21 -0.41 -2.09 16 6 C -0.14 -1.35 10.18 -41.21 -0.42 -1.77 16 7 C -0.24 -2.40 11.23 29.04 0.33 -2.08 16 8 S 0.15 1.75 22.09 -107.50 -2.37 -0.63 16 9 N -0.53 -7.71 3.27 -236.29 -0.77 -8.48 16 10 C 0.01 0.10 8.64 60.06 0.52 0.61 16 11 C 0.06 1.02 3.99 -3.83 -0.02 1.00 16 12 C -0.05 -0.99 0.61 -154.51 -0.09 -1.09 16 13 C -0.11 -2.19 7.89 37.16 0.29 -1.90 16 14 C -0.13 -2.51 7.02 37.15 0.26 -2.25 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 16 C -0.50 -13.76 7.34 -34.44 -0.25 -14.01 16 17 H 0.06 1.58 5.90 -52.49 -0.31 1.28 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.93 5.97 -51.94 -0.31 0.62 16 27 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.02 0.26 7.94 -51.92 -0.41 -0.15 16 31 H 0.09 1.29 4.34 -51.93 -0.23 1.06 16 32 H 0.06 0.79 5.90 -51.93 -0.31 0.49 16 33 H 0.03 0.58 7.60 -51.93 -0.39 0.18 16 34 H 0.07 1.24 5.44 -51.93 -0.28 0.95 16 35 H 0.04 0.80 7.44 -51.92 -0.39 0.41 16 36 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.62 7.26 -51.93 -0.38 0.24 16 39 H 0.07 1.43 6.24 -51.93 -0.32 1.10 16 40 H 0.04 0.71 6.37 -51.93 -0.33 0.38 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -28.92 339.74 -9.24 -38.16 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.94 Total: -1.54 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 0.02 Total: -23.14 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.04 Total: -34.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.37 Total: -0.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.92 -9.24 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157872492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.697 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds