Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46299 * 2 1 4 4 C 1.50691 * 109.47400 * 239.99869 * 2 1 3 5 5 C 1.33395 * 125.20644 * 99.99574 * 4 2 1 6 6 C 1.38421 * 114.92244 * 180.28898 * 5 4 2 7 7 C 1.33392 * 114.92067 * 359.49687 * 6 5 4 8 8 S 1.75883 * 109.59203 * 0.47265 * 7 6 5 9 9 N 1.46901 * 109.47075 * 119.99189 * 2 1 3 10 10 C 1.46896 * 110.99901 * 176.04859 * 9 2 1 11 11 C 1.46893 * 111.00442 * 300.00683 * 9 2 1 12 12 C 1.52998 * 109.47352 * 152.03788 * 11 9 2 13 13 C 1.52999 * 109.47014 * 305.68246 * 12 11 9 14 14 C 1.52994 * 109.47212 * 65.68512 * 12 11 9 15 15 C 1.53003 * 109.47095 * 185.68469 * 12 11 9 16 16 C 1.50700 * 109.46952 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00138 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00228 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99590 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46981 * 90.00166 * 20 18 16 22 22 H 1.48507 * 109.46973 * 209.99512 * 20 18 16 23 23 H 1.48500 * 109.47310 * 329.99893 * 20 18 16 24 24 H 1.08998 * 109.47205 * 60.01087 * 1 2 3 25 25 H 1.09001 * 109.46299 * 180.02562 * 1 2 3 26 26 H 1.08989 * 109.47517 * 299.99875 * 1 2 3 27 27 H 1.08004 * 122.53224 * 0.02647 * 5 4 2 28 28 H 1.08005 * 122.53869 * 179.73238 * 6 5 4 29 29 H 1.07994 * 125.20310 * 180.21140 * 7 6 5 30 30 H 1.09010 * 109.47145 * 68.92346 * 10 9 2 31 31 H 1.08997 * 109.47359 * 188.92251 * 10 9 2 32 32 H 1.09002 * 109.47199 * 308.92374 * 10 9 2 33 33 H 1.09000 * 109.47333 * 272.03616 * 11 9 2 34 34 H 1.09005 * 109.47159 * 32.03619 * 11 9 2 35 35 H 1.09009 * 109.46905 * 60.00223 * 13 12 11 36 36 H 1.08995 * 109.47287 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47337 * 300.00282 * 13 12 11 38 38 H 1.09005 * 109.47051 * 38.07480 * 14 12 11 39 39 H 1.08995 * 109.47438 * 158.07803 * 14 12 11 40 40 H 1.09005 * 109.47177 * 278.08007 * 14 12 11 41 41 H 1.08991 * 109.47224 * 299.99781 * 15 12 11 42 42 H 1.09003 * 109.46862 * 60.00424 * 15 12 11 43 43 H 0.97007 * 120.00094 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4672 -0.1118 -2.3404 6 6 2.8749 -0.9718 -3.3454 7 6 2.7812 -2.2687 -3.0478 8 16 2.1347 -2.4557 -1.4228 9 7 2.0197 -0.6923 1.1995 10 6 3.4851 -0.7943 1.1872 11 6 1.5486 -0.0262 2.4211 12 6 1.4446 -1.0505 3.5528 13 6 0.5672 -2.2204 3.1029 14 6 2.8416 -1.5662 3.9039 15 6 0.8210 -0.3891 4.7835 16 6 0.7180 -1.3982 5.8981 17 1 1.0632 -2.4099 5.7442 18 6 0.1830 -1.0299 7.1143 19 7 -0.2369 0.2022 7.3019 20 14 0.0547 -2.2809 8.4956 21 1 1.2951 -2.2465 9.3113 22 1 -1.1116 -1.9524 9.3542 23 1 -0.1214 -3.6382 7.9194 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 2.4947 0.9625 -2.4483 28 1 3.2447 -0.6195 -4.2970 29 1 3.0559 -3.0799 -3.7056 30 1 3.9194 0.1968 1.3188 31 1 3.8109 -1.4445 1.9990 32 1 3.8123 -1.2108 0.2345 33 1 2.2530 0.7563 2.7030 34 1 0.5687 0.4152 2.2394 35 1 1.0116 -2.6916 2.2261 36 1 0.4935 -2.9503 3.9090 37 1 -0.4281 -1.8529 2.8528 38 1 3.5572 -0.7461 3.8445 39 1 2.8359 -1.9708 4.9160 40 1 3.1271 -2.3492 3.2012 41 1 1.4460 0.4442 5.1041 42 1 -0.1743 -0.0218 4.5334 43 1 -0.6130 0.4615 8.1576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157872492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = 17.114353 kcal Electronic energy + Delta-G solvation = -20616.931688 eV Core-core repulsion = 17788.185394 eV Total energy + Delta-G solvation = -2828.746294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25401 -38.59400 -36.73098 -34.39221 -32.40177 -29.97087 -28.96575 -28.19522 -27.58848 -25.44292 -25.26214 -24.02786 -21.66655 -20.23158 -19.40119 -18.28661 -17.97547 -16.72588 -16.58685 -16.29814 -16.07009 -15.27727 -15.02410 -14.60350 -14.34282 -14.06168 -13.88743 -13.71653 -13.58841 -13.48223 -13.08700 -12.90832 -12.78015 -12.69880 -12.58459 -12.42177 -12.31664 -12.21904 -11.94776 -11.89654 -11.63404 -11.44803 -11.22961 -10.82051 -10.67386 -10.47788 -9.50110 -9.23617 -9.19880 -8.11987 -6.18123 0.17058 0.84032 1.29786 1.41819 1.42207 1.52967 1.90946 2.45174 2.98027 3.21999 3.71799 4.10574 4.19531 4.25178 4.31201 4.34774 4.46886 4.51862 4.64548 4.67287 4.75186 4.76704 4.84055 4.86642 5.02613 5.03270 5.08146 5.12092 5.23738 5.25371 5.29392 5.33704 5.45372 5.55723 5.58906 5.63616 5.66826 5.71402 5.91226 5.96426 6.13919 6.22991 6.40701 6.96724 7.48666 9.00286 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.003807 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.657293 B = 7353.247667 C = 7542.317780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 H 0.055 0.945 4 C -0.172 4.172 5 C -0.147 4.147 6 C -0.141 4.141 7 C -0.229 4.229 8 S 0.114 5.886 9 N -0.528 5.528 10 C 0.010 3.990 11 C 0.071 3.929 12 C -0.046 4.046 13 C -0.101 4.101 14 C -0.124 4.124 15 C 0.042 3.958 16 C -0.511 4.511 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.938 5.938 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.181 0.819 30 H 0.020 0.980 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.065 0.935 41 H -0.017 1.017 42 H -0.015 1.015 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -2.783 -21.618 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.038 3.962 3 H 0.073 0.927 4 C -0.290 4.290 5 C -0.178 4.178 6 C -0.171 4.171 7 C -0.365 4.365 8 S 0.378 5.622 9 N -0.252 5.252 10 C -0.138 4.138 11 C -0.057 4.057 12 C -0.047 4.047 13 C -0.159 4.159 14 C -0.181 4.181 15 C 0.004 3.996 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.188 1.188 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.165 0.835 28 H 0.175 0.825 29 H 0.198 0.802 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.984 -4.412 -20.604 21.904 hybrid contribution 0.352 1.907 0.327 1.967 sum 6.336 -2.505 -20.277 21.391 Atomic orbital electron populations 1.21919 0.93000 1.02683 1.02197 1.20087 0.95755 0.94347 0.85977 0.92692 1.24441 1.07973 0.96887 0.99653 1.20338 1.02642 1.01914 0.92955 1.20344 1.03352 0.92184 1.01252 1.26062 1.08779 1.01416 1.00234 1.84702 1.62407 1.04373 1.10711 1.62021 1.10792 1.51544 1.00803 1.22840 0.86923 1.00488 1.03522 1.22225 0.99539 0.94594 0.89317 1.20397 0.95812 0.95376 0.93108 1.21466 0.97767 0.97090 0.99542 1.21935 0.95411 0.99940 1.00838 1.18996 0.93507 0.94541 0.92538 1.21603 1.38603 0.97494 0.97238 0.91751 1.25884 0.95735 0.96943 1.01428 1.70106 1.43655 1.19258 1.24893 0.85612 0.77512 0.79744 0.79199 1.20139 1.21274 1.18787 0.90678 0.92317 0.92327 0.83536 0.82464 0.80177 0.96115 0.89827 0.91033 0.95502 0.91266 0.91650 0.94695 0.95147 0.93966 0.93866 0.91672 0.99886 0.99651 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.05 71.98 0.65 -2.75 16 2 C 0.15 3.63 2.50 44.17 0.11 3.74 16 3 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 4 C -0.17 -3.81 3.94 24.59 0.10 -3.72 16 5 C -0.15 -2.81 10.04 21.22 0.21 -2.60 16 6 C -0.14 -2.34 10.18 21.22 0.22 -2.12 16 7 C -0.23 -3.92 11.23 66.72 0.75 -3.17 16 8 S 0.11 2.47 22.09 -56.49 -1.25 1.23 16 9 N -0.53 -14.86 3.27 -901.49 -2.94 -17.80 16 10 C 0.01 0.27 8.64 127.69 1.10 1.37 16 11 C 0.07 2.42 3.99 86.30 0.34 2.76 16 12 C -0.05 -1.85 0.61 -52.18 -0.03 -1.88 16 13 C -0.10 -3.90 7.89 71.98 0.57 -3.33 16 14 C -0.12 -4.62 7.02 71.98 0.50 -4.12 16 15 C 0.04 2.17 4.04 29.85 0.12 2.29 16 16 C -0.51 -28.41 7.34 25.60 0.19 -28.22 16 17 H 0.06 3.45 5.90 -2.91 -0.02 3.44 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 19 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 20 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.54 5.97 -2.39 -0.01 1.53 16 27 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.02 0.53 7.94 -2.38 -0.02 0.51 16 31 H 0.08 2.26 4.34 -2.39 -0.01 2.25 16 32 H 0.07 1.73 5.90 -2.39 -0.01 1.72 16 33 H 0.03 0.94 7.60 -2.39 -0.02 0.92 16 34 H 0.07 2.41 5.44 -2.38 -0.01 2.39 16 35 H 0.06 2.24 7.44 -2.38 -0.02 2.22 16 36 H 0.03 1.44 6.62 -2.39 -0.02 1.43 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.48 7.26 -2.38 -0.02 1.46 16 39 H 0.04 1.81 6.24 -2.39 -0.01 1.79 16 40 H 0.06 2.11 6.37 -2.38 -0.02 2.10 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -62.52 339.74 4.39 -58.13 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.98 Total: 10.34 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 5.30 Total: -41.48 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -2.66 Total: -74.96 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.25 Total: 1.23 kcal Total: -62.52 4.39 -58.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157872492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.243 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds