Wall clock time and date at job start Tue Mar 31 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35947 * 116.99616 * 2 1 4 4 C 1.38577 * 120.02937 * 0.27363 * 3 2 1 5 5 C 1.38804 * 119.89451 * 180.27772 * 4 3 2 6 6 N 1.39815 * 120.02156 * 179.74956 * 5 4 3 7 7 C 1.46499 * 119.99825 * 179.72304 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 8 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 C 1.38905 * 119.95009 * 359.46969 * 5 4 3 21 21 C 1.38178 * 120.04754 * 0.25170 * 20 5 4 22 22 C 1.38339 * 120.10498 * 0.02562 * 21 20 5 23 23 F 1.35095 * 119.97160 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47180 * 300.00530 * 1 2 3 25 25 H 1.08997 * 109.47180 * 60.00825 * 1 2 3 26 26 H 1.09002 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.04950 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99754 * 359.71447 * 6 5 4 29 29 H 1.09002 * 109.47391 * 59.99585 * 7 6 5 30 30 H 1.09001 * 109.46813 * 299.99642 * 7 6 5 31 31 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 32 32 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 34 34 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 35 35 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 37 37 H 1.09001 * 109.47109 * 299.99380 * 11 8 7 38 38 H 1.09002 * 109.47508 * 59.99571 * 11 8 7 39 39 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 40 40 H 1.08003 * 119.97180 * 180.27820 * 20 5 4 41 41 H 1.08005 * 119.94309 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2919 2.3739 0.0057 5 6 1.9249 3.6092 -0.0001 6 7 1.1665 4.7838 0.0003 7 6 1.8351 6.0873 0.0003 8 6 0.7842 7.1994 0.0002 9 6 -0.0902 7.0747 -1.2491 10 6 -0.0903 7.0748 1.2494 11 6 1.4825 8.5608 -0.0005 12 6 0.4475 9.6561 -0.0012 13 1 -0.6032 9.4063 -0.0016 14 6 0.8419 10.9773 -0.0013 15 7 2.1215 11.2815 -0.0004 16 14 -0.4409 12.3351 -0.0015 17 1 -1.2898 12.2142 1.2110 18 1 0.2367 13.6564 -0.0023 19 1 -1.2897 12.2139 -1.2140 20 6 3.3122 3.6775 -0.0006 21 6 4.0621 2.5170 -0.0004 22 6 3.4335 1.2846 -0.0004 23 9 4.1693 0.1517 -0.0008 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2133 2.3188 0.0106 28 1 0.1977 4.7355 0.0006 29 1 2.4578 6.1763 -0.8899 30 1 2.4583 6.1759 0.8901 31 1 -0.5876 6.1048 -1.2491 32 1 -0.8385 7.8672 -1.2495 33 1 0.5329 7.1634 -2.1390 34 1 0.5325 7.1636 2.1394 35 1 -0.8387 7.8674 1.2495 36 1 -0.5878 6.1049 1.2494 37 1 2.1057 8.6499 0.8894 38 1 2.1053 8.6493 -0.8906 39 1 2.3989 12.2110 -0.0001 40 1 3.8051 4.6385 -0.0006 41 1 5.1408 2.5721 -0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160009368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:46 Heat of formation + Delta-G solvation = -73.515320 kcal Electronic energy + Delta-G solvation = -21757.052886 eV Core-core repulsion = 18358.163419 eV Total energy + Delta-G solvation = -3398.889467 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.49856 -40.10756 -38.46366 -37.00545 -34.03277 -32.28606 -30.41198 -29.13176 -27.37411 -26.84932 -26.57315 -25.82339 -23.08042 -22.59042 -21.39140 -18.55510 -18.18055 -17.11268 -16.83174 -16.31357 -16.14794 -15.89191 -14.95703 -14.69780 -14.55545 -14.43619 -14.32249 -14.19361 -13.26504 -12.98050 -12.97695 -12.62935 -12.46709 -12.19043 -12.10995 -11.70179 -11.51977 -11.21622 -11.11572 -11.04459 -10.91659 -10.68811 -10.44078 -10.31807 -9.98055 -9.60263 -9.27666 -9.00819 -8.53696 -8.41411 -7.23246 -6.05944 -4.07311 1.27185 1.46541 3.04687 3.28051 3.33750 3.34786 3.56190 3.70070 4.40377 4.43923 4.73868 4.87603 4.96072 5.13780 5.19995 5.28622 5.29707 5.39453 5.48353 5.51542 5.61513 5.71243 6.00693 6.08947 6.09416 6.13457 6.26630 6.30191 6.31328 6.55663 6.56618 6.60923 6.96178 7.00368 7.02865 7.18789 7.41954 7.55393 7.67944 7.82607 7.92281 8.34436 8.97029 9.56222 11.05494 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035388 B = 0.003173 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.049671 B = 8822.995250 C = 9412.372319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.142 3.858 4 C -0.270 4.270 5 C 0.255 3.745 6 N -0.731 5.731 7 C 0.129 3.871 8 C -0.071 4.071 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.037 3.963 12 C -0.513 4.513 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.207 4.207 21 C -0.064 4.064 22 C -0.007 4.007 23 F -0.145 7.145 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.399 0.601 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.135 0.865 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -18.185 0.004 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.095 3.905 4 C -0.294 4.294 5 C 0.147 3.853 6 N -0.357 5.357 7 C 0.005 3.995 8 C -0.072 4.072 9 C -0.184 4.184 10 C -0.184 4.184 11 C 0.000 4.000 12 C -0.551 4.551 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.230 4.230 21 C -0.084 4.084 22 C -0.029 4.029 23 F -0.124 7.124 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.236 0.764 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.801 -18.047 0.005 18.136 hybrid contribution -1.144 0.841 -0.002 1.420 sum -2.946 -17.206 0.002 17.456 Atomic orbital electron populations 1.23072 0.78224 1.03847 1.01608 1.86115 1.21542 1.26246 1.88589 1.18645 0.90521 0.84690 0.96603 1.20407 0.99761 0.90253 1.19008 1.17649 0.91020 0.86183 0.90408 1.45139 1.08206 1.03013 1.79380 1.21687 0.95927 0.81022 1.00843 1.20874 0.94824 0.96344 0.95113 1.21749 0.99911 0.99480 0.97230 1.21747 0.99911 0.99481 0.97230 1.19084 0.95449 0.88136 0.97381 1.21139 0.92899 0.90583 1.50526 0.92346 1.25003 0.95101 0.98850 0.95453 1.69947 1.14358 1.18396 1.50718 0.86708 0.81683 0.81352 0.78556 1.20304 1.21346 1.20310 1.20503 0.91702 0.98715 1.12077 1.20716 1.00417 0.89777 0.97475 1.16641 0.85726 0.82848 1.17674 1.91428 1.76557 1.49127 1.95259 0.92477 0.92472 0.88272 0.85024 0.76448 0.92231 0.92228 0.95253 0.91499 0.93380 0.93380 0.91501 0.95248 0.96383 0.96386 0.92936 0.84729 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.91 10.36 -19.57 -0.20 -4.11 16 3 C 0.14 1.90 6.69 -39.20 -0.26 1.64 16 4 C -0.27 -3.31 8.88 -39.25 -0.35 -3.66 16 5 C 0.26 3.37 6.65 -83.76 -0.56 2.81 16 6 N -0.73 -9.70 5.14 -58.62 -0.30 -10.00 16 7 C 0.13 1.98 3.80 -4.04 -0.02 1.97 16 8 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 9 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 10 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 11 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 12 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 13 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.21 -2.68 9.31 -39.36 -0.37 -3.05 16 21 C -0.06 -0.80 10.01 -39.57 -0.40 -1.20 16 22 C -0.01 -0.10 7.31 -39.29 -0.29 -0.39 16 23 F -0.14 -2.14 17.11 2.25 0.04 -2.10 16 24 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 25 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 28 H 0.40 4.91 6.18 -40.82 -0.25 4.66 16 29 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 30 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.07 1.23 6.61 -51.93 -0.34 0.89 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 1.68 6.73 -52.48 -0.35 1.32 16 41 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -29.00 333.12 -6.86 -35.85 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.93 Total: 1.62 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.20 Total: -17.02 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.44 Total: -35.03 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.00 -6.86 -35.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160009368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds