Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35947 * 116.99616 * 2 1 4 4 C 1.38577 * 120.02937 * 0.27363 * 3 2 1 5 5 C 1.38804 * 119.89451 * 180.27772 * 4 3 2 6 6 N 1.39815 * 120.02156 * 179.74956 * 5 4 3 7 7 C 1.46499 * 119.99825 * 179.72304 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 8 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 C 1.38905 * 119.95009 * 359.46969 * 5 4 3 21 21 C 1.38178 * 120.04754 * 0.25170 * 20 5 4 22 22 C 1.38339 * 120.10498 * 0.02562 * 21 20 5 23 23 F 1.35095 * 119.97160 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47180 * 300.00530 * 1 2 3 25 25 H 1.08997 * 109.47180 * 60.00825 * 1 2 3 26 26 H 1.09002 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.04950 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99754 * 359.71447 * 6 5 4 29 29 H 1.09002 * 109.47391 * 59.99585 * 7 6 5 30 30 H 1.09001 * 109.46813 * 299.99642 * 7 6 5 31 31 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 32 32 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 34 34 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 35 35 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 37 37 H 1.09001 * 109.47109 * 299.99380 * 11 8 7 38 38 H 1.09002 * 109.47508 * 59.99571 * 11 8 7 39 39 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 40 40 H 1.08003 * 119.97180 * 180.27820 * 20 5 4 41 41 H 1.08005 * 119.94309 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2919 2.3739 0.0057 5 6 1.9249 3.6092 -0.0001 6 7 1.1665 4.7838 0.0003 7 6 1.8351 6.0873 0.0003 8 6 0.7842 7.1994 0.0002 9 6 -0.0902 7.0747 -1.2491 10 6 -0.0903 7.0748 1.2494 11 6 1.4825 8.5608 -0.0005 12 6 0.4475 9.6561 -0.0012 13 1 -0.6032 9.4063 -0.0016 14 6 0.8419 10.9773 -0.0013 15 7 2.1215 11.2815 -0.0004 16 14 -0.4409 12.3351 -0.0015 17 1 -1.2898 12.2142 1.2110 18 1 0.2367 13.6564 -0.0023 19 1 -1.2897 12.2139 -1.2140 20 6 3.3122 3.6775 -0.0006 21 6 4.0621 2.5170 -0.0004 22 6 3.4335 1.2846 -0.0004 23 9 4.1693 0.1517 -0.0008 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2133 2.3188 0.0106 28 1 0.1977 4.7355 0.0006 29 1 2.4578 6.1763 -0.8899 30 1 2.4583 6.1759 0.8901 31 1 -0.5876 6.1048 -1.2491 32 1 -0.8385 7.8672 -1.2495 33 1 0.5329 7.1634 -2.1390 34 1 0.5325 7.1636 2.1394 35 1 -0.8387 7.8674 1.2495 36 1 -0.5878 6.1049 1.2494 37 1 2.1057 8.6499 0.8894 38 1 2.1053 8.6493 -0.8906 39 1 2.3989 12.2110 -0.0001 40 1 3.8051 4.6385 -0.0006 41 1 5.1408 2.5721 -0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160009368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -89.500061 kcal Electronic energy + Delta-G solvation = -21757.746037 eV Core-core repulsion = 18358.163419 eV Total energy + Delta-G solvation = -3399.582618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.58011 -41.06249 -39.60498 -38.21814 -35.40485 -34.09414 -31.38838 -30.20964 -28.89685 -27.95498 -27.89256 -27.12415 -24.81010 -23.56323 -22.50618 -19.84616 -19.28905 -18.36432 -18.15361 -17.78576 -17.04473 -16.99416 -16.43784 -15.91165 -15.74859 -15.73830 -15.38012 -15.07315 -14.73650 -14.44747 -14.34198 -13.93087 -13.68438 -13.41595 -13.35801 -12.84871 -12.74731 -12.62981 -12.48107 -12.31660 -12.29285 -12.14478 -12.09970 -11.91700 -11.49985 -10.97114 -10.83800 -10.68849 -10.49305 -9.48502 -8.28633 -8.13729 -6.20499 0.31228 0.44164 1.42837 1.43730 1.51076 2.22453 2.41673 2.51153 2.70828 3.21099 3.46452 3.82214 3.99104 4.12800 4.17675 4.19340 4.25575 4.39488 4.41002 4.57598 4.62337 4.72484 4.75536 4.77417 4.80974 4.98617 5.06109 5.13106 5.15416 5.25412 5.32742 5.44685 5.51738 5.53659 5.56783 5.64272 5.82792 5.91391 6.19519 6.33471 6.39978 6.82567 6.94665 7.47076 8.98238 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035388 B = 0.003173 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.049671 B = 8822.995250 C = 9412.372319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.137 3.863 4 C -0.263 4.263 5 C 0.248 3.752 6 N -0.724 5.724 7 C 0.143 3.857 8 C -0.065 4.065 9 C -0.121 4.121 10 C -0.121 4.121 11 C 0.042 3.958 12 C -0.516 4.516 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.953 3.047 17 H -0.268 1.268 18 H -0.290 1.290 19 H -0.268 1.268 20 C -0.217 4.217 21 C -0.061 4.061 22 C -0.031 4.031 23 F -0.154 7.154 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.156 0.844 28 H 0.407 0.593 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.064 0.936 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.136 0.864 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -19.419 0.007 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.090 3.910 4 C -0.286 4.286 5 C 0.141 3.859 6 N -0.352 5.352 7 C 0.018 3.982 8 C -0.065 4.065 9 C -0.178 4.178 10 C -0.178 4.178 11 C 0.004 3.996 12 C -0.554 4.554 13 H 0.086 0.914 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.216 1.216 19 H -0.194 1.194 20 C -0.240 4.240 21 C -0.080 4.080 22 C -0.052 4.052 23 F -0.134 7.134 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.173 0.827 28 H 0.245 0.755 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.068 0.932 40 H 0.153 0.847 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.835 -19.311 0.008 19.688 hybrid contribution -0.516 1.132 -0.003 1.244 sum -4.351 -18.180 0.004 18.693 Atomic orbital electron populations 1.23401 0.75933 1.05736 1.02584 1.86102 1.23971 1.25979 1.88409 1.18781 0.90509 0.85434 0.96293 1.20555 1.00890 0.89295 1.17899 1.17752 0.91107 0.86344 0.90713 1.44853 1.08406 1.02059 1.79924 1.21325 0.94975 0.81394 1.00467 1.20678 0.95331 0.94053 0.96457 1.21676 0.99195 1.00847 0.96105 1.21674 0.99194 1.00849 0.96105 1.18954 0.94706 0.91310 0.94626 1.21580 0.93825 0.91227 1.48798 0.91416 1.25870 0.96889 1.01577 0.95542 1.70090 1.16404 1.18675 1.52544 0.85681 0.79253 0.78166 0.79040 1.19342 1.21634 1.19353 1.20621 0.92028 0.98926 1.12437 1.20889 1.01429 0.89147 0.96541 1.16987 0.86414 0.82974 1.18849 1.91396 1.76852 1.49672 1.95441 0.91427 0.91428 0.86140 0.82655 0.75535 0.92758 0.92749 0.91695 0.93166 0.94233 0.94228 0.93169 0.91688 0.99170 0.99173 0.93164 0.84651 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.70 10.36 -92.95 -0.96 -8.66 16 3 C 0.14 3.43 6.69 22.52 0.15 3.58 16 4 C -0.26 -5.75 8.88 22.49 0.20 -5.55 16 5 C 0.25 6.00 6.65 38.16 0.25 6.26 16 6 N -0.72 -17.38 5.14 -339.39 -1.74 -19.13 16 7 C 0.14 4.25 3.80 86.38 0.33 4.58 16 8 C -0.06 -2.26 0.54 -52.18 -0.03 -2.28 16 9 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 10 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 11 C 0.04 1.99 4.04 29.85 0.12 2.11 16 12 C -0.52 -26.85 7.65 25.60 0.20 -26.66 16 13 H 0.07 3.34 5.68 -2.91 -0.02 3.32 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.94 -55.26 13.29 21.45 0.28 -54.97 16 16 Si 0.95 42.72 29.54 68.60 2.03 44.74 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.22 -5.37 9.31 22.42 0.21 -5.16 16 21 C -0.06 -1.45 10.01 22.28 0.22 -1.23 16 22 C -0.03 -0.83 7.31 22.46 0.16 -0.66 16 23 F -0.15 -4.51 17.11 44.97 0.77 -3.74 16 24 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 25 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.16 2.56 6.30 -2.91 -0.02 2.55 16 28 H 0.41 8.47 6.18 -92.71 -0.57 7.89 16 29 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 30 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 31 H 0.06 1.61 6.86 -2.39 -0.02 1.60 16 32 H 0.05 1.77 6.61 -2.39 -0.02 1.76 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.77 6.62 -2.38 -0.02 1.76 16 36 H 0.06 1.61 6.86 -2.39 -0.02 1.60 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.14 3.28 6.73 -2.91 -0.02 3.26 16 41 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -63.23 333.12 5.39 -57.84 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.46 Total: 13.84 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.55 Total: -29.91 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.46 Total: -74.10 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.96 Total: -8.66 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.77 Total: -3.74 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.23 5.39 -57.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160009368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.658 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds