Wall clock time and date at job start Tue Mar 31 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 C 1.50701 * 109.47502 * 120.00236 * 2 1 3 5 5 N 1.31070 * 126.65893 * 300.17445 * 4 2 1 6 6 N 1.28836 * 107.99229 * 180.24072 * 5 4 2 7 7 N 1.28731 * 109.39789 * 359.75253 * 6 5 4 8 8 N 1.29019 * 108.81062 * 359.97438 * 7 6 5 9 9 C 1.46498 * 126.44436 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47558 * 90.01915 * 9 8 7 11 11 O 1.21282 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00153 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99811 * 0.02562 * 12 10 9 14 14 C 1.46497 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.08996 * 109.47049 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47188 * 120.00098 * 14 12 10 17 17 C 1.50706 * 109.46582 * 239.99950 * 14 12 10 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 H 1.09005 * 109.47280 * 59.99945 * 1 2 3 26 26 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47466 * 299.99643 * 1 2 3 28 28 H 1.09004 * 109.47610 * 239.99908 * 2 1 3 29 29 H 1.08998 * 109.47874 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46902 * 300.00286 * 3 2 1 31 31 H 1.09005 * 109.47123 * 59.99792 * 3 2 1 32 32 H 1.09009 * 109.46864 * 330.01881 * 9 8 7 33 33 H 1.08996 * 109.47233 * 210.02809 * 9 8 7 34 34 H 1.09005 * 109.46851 * 270.00168 * 13 12 10 35 35 H 1.08997 * 109.47129 * 29.99442 * 13 12 10 36 36 H 1.08993 * 109.46804 * 150.00082 * 13 12 10 37 37 H 1.09002 * 109.47153 * 299.99573 * 16 14 12 38 38 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 39 39 H 1.09004 * 109.47261 * 59.99745 * 16 14 12 40 40 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3803 2.4764 6 7 2.4015 -1.2269 3.2349 7 7 3.0154 -2.0916 2.5051 8 7 2.8088 -1.8094 1.2632 9 6 3.3279 -2.5428 0.1061 10 6 2.3494 -3.6197 -0.2863 11 8 1.3196 -3.7604 0.3387 12 7 2.6187 -4.4265 -1.3318 13 6 3.8630 -4.2569 -2.0865 14 6 1.6673 -5.4730 -1.7136 15 1 0.8091 -5.4463 -1.0422 16 6 1.1986 -5.2365 -3.1507 17 6 2.3372 -6.8197 -1.6188 18 1 3.3685 -6.8890 -1.3059 19 6 1.6332 -7.9632 -1.9316 20 7 0.3774 -7.8788 -2.3131 21 14 2.4633 -9.6325 -1.8133 22 1 2.9182 -9.8615 -0.4185 23 1 1.4989 -10.6933 -2.2005 24 1 3.6327 -9.6697 -2.7278 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 4.2846 -2.9974 0.3635 33 1 3.4652 -1.8551 -0.7282 34 1 3.6991 -3.5551 -2.9043 35 1 4.6387 -3.8699 -1.4258 36 1 4.1767 -5.2192 -2.4908 37 1 0.7141 -4.2625 -3.2193 38 1 0.4910 -6.0155 -3.4349 39 1 2.0571 -5.2635 -3.8220 40 1 -0.1176 -8.6833 -2.5334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174188874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:58 Heat of formation + Delta-G solvation = 77.946040 kcal Electronic energy + Delta-G solvation = -22848.649948 eV Core-core repulsion = 19508.541051 eV Total energy + Delta-G solvation = -3340.108897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.04780 -39.50708 -36.26956 -35.81848 -35.07809 -33.08240 -31.39337 -30.16729 -28.33158 -27.37266 -26.39933 -25.36227 -24.36000 -23.43024 -21.55906 -20.59353 -18.94399 -17.73759 -17.23656 -16.56875 -16.09620 -15.66674 -15.36217 -15.18857 -14.65363 -14.29504 -13.52200 -13.41158 -13.17144 -12.95659 -12.69839 -12.49951 -12.36692 -12.00802 -11.91102 -11.74658 -11.70168 -11.49575 -11.29864 -11.19609 -11.12415 -10.96437 -10.89282 -10.86383 -10.41815 -10.29675 -9.90657 -9.40514 -9.28380 -8.55816 -7.92372 -6.20105 -4.29375 1.33862 1.96354 2.40124 2.82980 3.20499 3.26730 3.27807 3.51343 3.87470 4.18901 4.28490 4.44782 4.58409 4.71069 4.80822 4.93710 5.11845 5.12810 5.39095 5.43101 5.49573 5.56730 5.68907 5.72220 5.73280 5.85089 6.00243 6.11764 6.14951 6.20143 6.56714 6.61942 6.85288 7.11757 7.28755 7.54949 7.82113 7.99835 8.20599 8.50896 8.75179 8.76710 9.37581 10.85287 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.004480 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.009774 B = 6249.040177 C = 6585.547241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.142 4.142 4 C 0.199 3.801 5 N -0.304 5.304 6 N -0.080 5.080 7 N -0.084 5.084 8 N -0.287 5.287 9 C 0.090 3.910 10 C 0.490 3.510 11 O -0.531 6.531 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.259 3.741 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.532 4.532 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.012 0.988 38 H 0.095 0.905 39 H 0.031 0.969 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 14.887 -3.034 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.079 4.079 5 N -0.153 5.153 6 N -0.074 5.074 7 N -0.070 5.070 8 N -0.088 5.088 9 C -0.036 4.036 10 C 0.273 3.727 11 O -0.408 6.408 12 N -0.313 5.313 13 C -0.070 4.070 14 C 0.160 3.840 15 H 0.082 0.918 16 C -0.204 4.204 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.912 14.481 -1.346 15.699 hybrid contribution 0.617 -1.226 -1.029 1.715 sum 6.529 13.255 -2.375 14.965 Atomic orbital electron populations 1.21822 0.91764 1.03547 1.03094 1.19764 0.97929 0.95771 0.89754 1.21840 1.01068 0.93591 1.03518 1.25995 0.94975 0.89028 0.97872 1.74880 1.19864 1.22209 0.98368 1.78549 1.07130 0.99148 1.22552 1.78869 1.20320 1.20441 0.87362 1.47905 1.34222 1.19697 1.06954 1.22205 0.99863 0.95987 0.85581 1.20049 0.87264 0.83164 0.82206 1.90774 1.26622 1.70885 1.52507 1.48275 1.21444 1.32928 1.28608 1.21767 0.85718 1.03697 0.95812 1.19048 0.88392 0.83226 0.93352 0.91816 1.22090 1.00884 0.99441 0.98017 1.21224 0.98617 0.90344 1.46907 0.92141 1.24885 0.94827 0.99279 0.94607 1.69854 1.08538 1.29304 1.44627 0.86519 0.79109 0.82921 0.78659 1.20149 1.21066 1.20131 0.91021 0.91595 0.91193 0.89135 0.92503 0.90904 0.91024 0.84514 0.85022 0.93076 0.92766 0.89184 0.96938 0.88617 0.94941 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.17 37.15 0.34 -1.24 16 2 C -0.01 -0.11 3.26 -91.78 -0.30 -0.41 16 3 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 4 C 0.20 2.95 6.64 -155.43 -1.03 1.91 16 5 N -0.30 -5.23 12.36 32.70 0.40 -4.82 16 6 N -0.08 -1.52 13.43 60.35 0.81 -0.71 16 7 N -0.08 -1.55 13.29 60.35 0.80 -0.74 16 8 N -0.29 -4.50 2.83 -59.44 -0.17 -4.67 16 9 C 0.09 1.13 5.13 -5.19 -0.03 1.11 16 10 C 0.49 8.96 7.74 -10.98 -0.09 8.88 16 11 O -0.53 -12.46 15.76 5.56 0.09 -12.37 16 12 N -0.58 -10.77 2.75 -175.26 -0.48 -11.25 16 13 C 0.07 0.98 9.24 59.85 0.55 1.53 16 14 C 0.26 6.12 2.64 -69.08 -0.18 5.94 16 15 H 0.06 1.80 6.90 -51.93 -0.36 1.44 16 16 C -0.15 -3.19 8.97 37.16 0.33 -2.86 16 17 C -0.53 -13.55 7.99 -34.44 -0.28 -13.82 16 18 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 19 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -24.13 11.32 55.43 0.63 -23.51 16 21 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.82 6.84 -51.93 -0.36 0.46 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.41 7.40 -51.92 -0.38 1.02 16 33 H 0.13 1.06 7.08 -51.93 -0.37 0.69 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.52 6.44 -51.93 -0.33 0.18 16 36 H 0.09 1.34 7.02 -51.93 -0.36 0.97 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 39 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -33.33 334.05 -4.11 -37.44 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.78 Total: -1.59 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.43 Total: 1.90 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 1.99 Total: -45.70 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.33 -4.11 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174188874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.390 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds