Wall clock time and date at job start Tue Mar 31 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31070 * 126.65796 * 60.02429 * 4 2 1 6 6 N 1.28835 * 107.99210 * 179.97438 * 5 4 2 7 7 N 1.28747 * 109.39715 * 0.02562 * 6 5 4 8 8 N 1.29023 * 108.80529 * 359.74208 * 7 6 5 9 9 C 1.46498 * 126.43507 * 180.24546 * 8 7 6 10 10 C 1.50701 * 109.47269 * 270.18090 * 9 8 7 11 11 O 1.21284 * 120.00016 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00146 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00291 * 0.02562 * 12 10 9 14 14 C 1.46508 * 120.00332 * 180.02562 * 12 10 9 15 15 H 1.08996 * 109.46383 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47008 * 240.00165 * 14 12 10 17 17 C 1.50693 * 109.47345 * 119.99655 * 14 12 10 18 18 H 1.08004 * 119.99912 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00109 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99684 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00113 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47439 * 60.00081 * 21 19 17 23 23 H 1.48504 * 109.47090 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47205 * 300.00044 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09003 * 109.47498 * 30.18461 * 9 8 7 33 33 H 1.09009 * 109.46889 * 150.18374 * 9 8 7 34 34 H 1.08995 * 109.47237 * 89.99695 * 13 12 10 35 35 H 1.08997 * 109.47099 * 210.00677 * 13 12 10 36 36 H 1.09005 * 109.46612 * 329.99638 * 13 12 10 37 37 H 1.08997 * 109.47144 * 179.97438 * 16 14 12 38 38 H 1.09003 * 109.46933 * 299.99406 * 16 14 12 39 39 H 1.08998 * 109.47536 * 59.99117 * 16 14 12 40 40 H 0.97009 * 119.99669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7979 -0.3782 -2.4765 6 7 2.3994 -1.2282 -3.2350 7 7 3.0112 -2.0946 -2.5052 8 7 2.8130 -1.8064 -1.2633 9 6 3.3368 -2.5366 -0.1063 10 6 2.3595 -3.6118 0.2936 11 8 1.3273 -3.7545 -0.3271 12 7 2.6325 -4.4149 1.3409 13 6 3.8790 -4.2424 2.0910 14 6 1.6827 -5.4606 1.7293 15 1 0.8220 -5.4359 1.0610 16 6 1.2185 -5.2194 3.1671 17 6 2.3526 -6.8073 1.6369 18 1 3.3829 -6.8773 1.3208 19 6 1.6505 -7.9499 1.9567 20 7 0.3959 -7.8646 2.3421 21 14 2.4811 -9.6192 1.8428 22 1 3.6536 -9.6519 2.7535 23 1 1.5182 -10.6791 2.2364 24 1 2.9315 -9.8538 0.4473 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.2922 -2.9924 -0.3663 33 1 3.4780 -1.8464 0.7255 34 1 3.7175 -3.5380 2.9070 35 1 4.1944 -5.2033 2.4974 36 1 4.6526 -3.8575 1.4265 37 1 0.5115 -5.9971 3.4559 38 1 2.0791 -5.2438 3.8356 39 1 0.7340 -4.2453 3.2340 40 1 -0.0982 -8.6686 2.5668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174188886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:00 Heat of formation + Delta-G solvation = 77.932832 kcal Electronic energy + Delta-G solvation = -22850.800251 eV Core-core repulsion = 19510.690781 eV Total energy + Delta-G solvation = -3340.109470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.04586 -39.50756 -36.26799 -35.81855 -35.07708 -33.08310 -31.39189 -30.16689 -28.33136 -27.37180 -26.39957 -25.36262 -24.35819 -23.42991 -21.55895 -20.59315 -18.94643 -17.73159 -17.23887 -16.56796 -16.09712 -15.66319 -15.36304 -15.18850 -14.65253 -14.29534 -13.52104 -13.41121 -13.17264 -12.95540 -12.69898 -12.49916 -12.36644 -12.00782 -11.91072 -11.74558 -11.70112 -11.49504 -11.29798 -11.19703 -11.12541 -10.96406 -10.89225 -10.86309 -10.41847 -10.29648 -9.90505 -9.40557 -9.28392 -8.55813 -7.92434 -6.20138 -4.29403 1.33828 1.96577 2.40140 2.82967 3.20468 3.26726 3.27767 3.51256 3.87546 4.18987 4.28464 4.44915 4.58412 4.71153 4.80930 4.93808 5.11823 5.12810 5.39028 5.43197 5.49634 5.56791 5.68999 5.72275 5.73354 5.85059 6.00369 6.11739 6.14989 6.20170 6.56731 6.61916 6.85327 7.11700 7.28780 7.54909 7.82099 7.99823 8.20616 8.50857 8.75137 8.76688 9.37559 10.85235 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.004482 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.400839 B = 6245.788712 C = 6582.179715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.142 4.142 4 C 0.200 3.800 5 N -0.304 5.304 6 N -0.080 5.080 7 N -0.084 5.084 8 N -0.287 5.287 9 C 0.090 3.910 10 C 0.490 3.510 11 O -0.531 6.531 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.259 3.741 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.532 4.532 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.011 0.989 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 14.874 2.964 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.078 4.078 5 N -0.153 5.153 6 N -0.074 5.074 7 N -0.070 5.070 8 N -0.088 5.088 9 C -0.036 4.036 10 C 0.273 3.727 11 O -0.408 6.408 12 N -0.313 5.313 13 C -0.070 4.070 14 C 0.160 3.840 15 H 0.082 0.918 16 C -0.204 4.204 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.899 14.469 1.281 15.678 hybrid contribution 0.618 -1.225 1.032 1.717 sum 6.518 13.245 2.312 14.941 Atomic orbital electron populations 1.21823 0.91759 1.03547 1.03090 1.19765 0.97935 0.95764 0.89754 1.21839 1.01066 0.93600 1.03518 1.25992 0.94832 0.89148 0.97870 1.74881 1.19946 1.22144 0.98364 1.78553 1.07335 0.98943 1.22555 1.78876 1.20382 1.20363 0.87366 1.47912 1.34086 1.19832 1.06954 1.22207 0.99784 0.96067 0.85579 1.20050 0.87286 0.83158 0.82199 1.90775 1.26452 1.70752 1.52814 1.48275 1.21337 1.33088 1.28555 1.21767 0.85673 1.03677 0.95880 1.19046 0.88437 0.83241 0.93283 0.91823 1.22089 1.00873 0.99431 0.98043 1.21219 0.98740 0.90382 1.46742 0.92142 1.24885 0.94833 0.99278 0.94607 1.69859 1.08637 1.29326 1.44499 0.86518 0.79111 0.82920 0.78654 1.20127 1.21065 1.20153 0.91197 0.91021 0.91589 0.89135 0.92508 0.91022 0.90907 0.84506 0.85019 0.93073 0.89185 0.92768 0.88616 0.94941 0.96944 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.18 37.16 0.34 -1.24 16 2 C -0.01 -0.11 3.26 -91.77 -0.30 -0.41 16 3 C -0.14 -1.14 9.17 37.15 0.34 -0.80 16 4 C 0.20 2.95 6.64 -155.43 -1.03 1.92 16 5 N -0.30 -5.23 12.36 32.70 0.40 -4.82 16 6 N -0.08 -1.52 13.43 60.35 0.81 -0.71 16 7 N -0.08 -1.55 13.29 60.35 0.80 -0.74 16 8 N -0.29 -4.50 2.83 -59.44 -0.17 -4.67 16 9 C 0.09 1.13 5.12 -5.19 -0.03 1.11 16 10 C 0.49 8.96 7.74 -10.99 -0.09 8.87 16 11 O -0.53 -12.45 15.76 5.55 0.09 -12.36 16 12 N -0.58 -10.77 2.75 -175.26 -0.48 -11.25 16 13 C 0.07 0.98 9.24 59.85 0.55 1.53 16 14 C 0.26 6.13 2.64 -69.08 -0.18 5.94 16 15 H 0.06 1.79 6.90 -51.93 -0.36 1.44 16 16 C -0.15 -3.19 8.97 37.16 0.33 -2.86 16 17 C -0.53 -13.54 7.99 -34.44 -0.28 -13.82 16 18 H 0.06 1.50 7.33 -52.48 -0.38 1.11 16 19 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 21 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.82 6.85 -51.93 -0.36 0.47 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.41 7.40 -51.93 -0.38 1.03 16 33 H 0.13 1.06 7.10 -51.92 -0.37 0.69 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.34 7.02 -51.93 -0.36 0.97 16 36 H 0.05 0.52 6.44 -51.93 -0.33 0.18 16 37 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -33.32 334.07 -4.11 -37.43 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.78 Total: -1.59 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.43 Total: 1.90 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 1.99 Total: -45.69 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.32 -4.11 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174188886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.362 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds