Wall clock time and date at job start Tue Mar 31 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.33387 * 125.20097 * 90.00187 * 3 2 1 5 5 C 1.38429 * 114.91542 * 179.79615 * 4 3 2 6 6 C 1.33384 * 114.92399 * 0.42576 * 5 4 3 7 7 C 1.50703 * 125.20461 * 179.86134 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47153 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99780 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99793 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00101 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00154 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47418 * 89.99759 * 18 16 14 20 20 H 1.48508 * 109.47382 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47516 * 329.99993 * 18 16 14 22 22 S 1.75882 * 109.59298 * 359.59684 * 6 5 4 23 23 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47089 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47487 * 60.00070 * 1 2 3 26 26 H 1.09007 * 109.47046 * 239.99960 * 2 1 3 27 27 H 1.08998 * 109.47487 * 119.99930 * 2 1 3 28 28 H 1.07991 * 122.54186 * 0.02562 * 4 3 2 29 29 H 1.07996 * 122.53661 * 180.27352 * 5 4 3 30 30 H 1.09002 * 109.47152 * 329.72078 * 7 6 5 31 31 H 1.09001 * 109.46980 * 209.72179 * 7 6 5 32 32 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 33 33 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 34 34 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 35 35 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 36 36 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 37 37 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 38 38 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 39 39 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 41 41 H 1.08995 * 109.47051 * 300.00167 * 13 10 9 42 42 H 1.09003 * 109.46901 * 60.00330 * 13 10 9 43 43 H 0.97005 * 120.00536 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3247 5.0782 -0.9771 8 7 4.7833 5.0485 -1.1493 9 6 5.2787 6.3315 -1.6657 10 6 6.7980 6.2618 -1.8320 11 6 7.4467 5.9728 -0.4768 12 6 7.1527 5.1449 -2.8157 13 6 7.3141 7.5982 -2.3692 14 6 8.8107 7.5298 -2.5325 15 1 9.3407 6.6239 -2.2780 16 6 9.5032 8.6240 -3.0056 17 7 10.8092 8.5642 -3.1485 18 14 8.5866 10.1916 -3.4437 19 1 8.5083 11.0698 -2.2486 20 1 9.3081 10.8995 -4.5317 21 1 7.2145 9.8520 -3.8990 22 16 2.3697 2.3770 -1.4372 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.1527 1.7599 2.0894 29 1 2.9962 4.1188 1.6349 30 1 3.0581 5.8650 -0.2714 31 1 2.8494 5.2756 -1.9380 32 1 5.2445 4.8035 -0.2859 33 1 4.8169 6.5371 -2.6313 34 1 5.0256 7.1272 -0.9650 35 1 7.0791 5.0208 -0.0936 36 1 8.5291 5.9236 -0.5952 37 1 7.1941 6.7684 0.2240 38 1 6.6906 5.3509 -3.7812 39 1 8.2351 5.0956 -2.9345 40 1 6.7851 4.1930 -2.4325 41 1 6.8520 7.8045 -3.3346 42 1 7.0614 8.3936 -1.6680 43 1 11.2964 9.3340 -3.4818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174270908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:41 Heat of formation + Delta-G solvation = 5.434982 kcal Electronic energy + Delta-G solvation = -19424.305956 eV Core-core repulsion = 16595.053206 eV Total energy + Delta-G solvation = -2829.252749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.49707 -37.60887 -35.04021 -33.50088 -32.13331 -29.43846 -27.60951 -26.36688 -26.20161 -24.64908 -23.11204 -22.29073 -21.72660 -18.91796 -17.97189 -17.08238 -16.73185 -15.56229 -15.30020 -14.88769 -14.47621 -14.15446 -14.11678 -13.65433 -13.47857 -13.13046 -12.96114 -12.59445 -12.36221 -12.21681 -12.01240 -11.96091 -11.78114 -11.52359 -11.26047 -11.05116 -10.94405 -10.84122 -10.71589 -10.48186 -10.33121 -9.80675 -9.66964 -9.32015 -8.90111 -8.63139 -8.50598 -8.48758 -8.16553 -5.98896 -3.95013 0.88968 1.54245 1.96747 2.62930 3.32526 3.40436 3.43971 4.43589 4.49119 4.50467 4.75588 4.83923 4.98161 5.12971 5.20274 5.34027 5.42660 5.45387 5.52641 5.56473 5.62173 5.65106 5.69506 5.85006 5.88129 6.07945 6.12828 6.17828 6.25030 6.41700 6.43549 6.61143 6.69438 6.81602 7.08136 7.13854 7.18396 7.27060 7.34162 7.46731 7.59642 7.86386 8.61021 9.07147 9.64168 11.14220 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.002912 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.310162 B = 9612.022201 C = 9700.863836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.186 4.186 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.164 4.164 7 C 0.126 3.874 8 N -0.680 5.680 9 C 0.067 3.933 10 C -0.048 4.048 11 C -0.131 4.131 12 C -0.118 4.118 13 C -0.005 4.005 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.267 1.267 22 S 0.120 5.880 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.343 0.657 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.015 0.985 42 H 0.008 0.992 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.787 -14.150 7.501 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.303 4.303 4 C -0.168 4.168 5 C -0.170 4.170 6 C -0.282 4.282 7 C -0.005 4.005 8 N -0.313 5.313 9 C -0.062 4.062 10 C -0.048 4.048 11 C -0.188 4.188 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.704 3.296 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.191 1.191 22 S 0.385 5.615 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.756 -14.586 5.249 25.906 hybrid contribution -0.294 1.898 2.095 2.842 sum -21.050 -12.687 7.344 25.652 Atomic orbital electron populations 1.21787 0.94491 1.01819 1.02415 1.20070 0.96007 0.89953 1.03116 1.24533 1.08722 1.00831 0.96249 1.19981 1.03530 0.94202 0.99038 1.20056 1.03825 0.97238 0.95890 1.24405 1.07551 1.00026 0.96208 1.20365 0.90123 0.89955 1.00055 1.60590 1.02305 1.33067 1.35346 1.22170 0.97047 0.87991 0.98945 1.20411 0.90646 0.97968 0.95791 1.21788 1.02538 0.98492 0.96028 1.21613 1.01661 0.96688 0.97551 1.19636 0.97468 0.91735 0.95401 1.21133 0.90000 1.00588 1.42698 0.90411 1.25019 0.94677 0.98550 0.95396 1.69907 1.06625 1.30748 1.47254 0.86848 0.80502 0.84017 0.78283 1.20537 1.21555 1.19130 1.84292 1.63558 1.04766 1.08905 0.92167 0.92393 0.92473 0.90870 0.90211 0.84819 0.84744 0.93656 0.90231 0.83733 0.91468 0.95733 0.94569 0.91114 0.94154 0.94226 0.92109 0.93635 0.96686 0.97393 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.05 -0.39 6.43 -27.88 -0.18 -0.57 16 3 C -0.19 -1.84 5.76 -36.00 -0.21 -2.04 16 4 C -0.14 -1.37 10.05 -41.21 -0.41 -1.78 16 5 C -0.14 -1.50 10.05 -41.21 -0.41 -1.91 16 6 C -0.16 -1.92 6.02 -36.00 -0.22 -2.13 16 7 C 0.13 1.53 6.18 -4.98 -0.03 1.50 16 8 N -0.68 -9.65 5.70 -115.05 -0.66 -10.30 16 9 C 0.07 1.09 4.65 -3.82 -0.02 1.07 16 10 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 11 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 12 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 13 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 14 C -0.51 -14.00 8.20 -34.44 -0.28 -14.29 16 15 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 16 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.86 13.96 55.43 0.77 -27.09 16 18 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 S 0.12 1.33 23.31 -107.50 -2.51 -1.17 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.34 4.78 6.77 -39.29 -0.27 4.52 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 36 H 0.07 1.48 6.61 -51.93 -0.34 1.13 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 40 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 41 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -29.74 352.42 -10.26 -40.00 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.43 Total: 0.41 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -1.08 Total: -24.32 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.12 Total: -37.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.74 -10.26 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174270908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.436 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds